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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0390500 |
| Transcript ID | LotjaGi4g1v0390500.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA damage-binding protein 1; TAIR: AT4G05420.2 damaged DNA binding protein 1A; Swiss-Prot: sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a; TrEMBL-Plants: tr|A0A0S3QYR5|A0A0S3QYR5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0390500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76917556..76922688) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGGAATACAGCTTATAAAACTAAATGTACAGCCTGATGCAAAAGGCTCTTATGTGGATGTTTTGGAAAGGTATGT CAATTTGGGGCCAATTGTTGATTTCTGTGTGGTAGACCTTGAAAGGCAAGGCCAAGGTCAGGTTGTAACCTGCTCTGGAG CTTACAAGGATGGCTCTCTTCGTGTTGTCCGTAATGGAATAGGGATCAATGAACAGGTCAGTTCCCTTCCTATCGGCCCA GTGTGGGGCCTCTGCACCTGAGACATTTAAAAAAGATAAATTAAACTTTATCAAACAAAGCATGCTTTGTAAAATAAATA CTATTTCATTGATGTAGGCATCTGTAGAACTTCAAGGTATCAAAGGAATGTGGTCACTAAGATCCTCAACAGATGATCCT TTTGACACTTTTCTGGTTGTTAGTTTCATAAGAGATACGAGAATCTTAGCAATGAACATTGAGGATGAGCTGGAAGAAAT TGAGATTGAGGGATTCTGTTCTCTAGTACAGACATTGTTTTGCCATGATGCAGTTCACAATCAACTTGTACAAGTAGGTT CTGACCTTATTTTCCTGCTTTGGTGTTTTTTTTCTTTTCTTGTTGATTTCGACACCTGCATCTCTCTATCTAACTCTTCG AAAAATGGATGCTGAGAAAGCTATTCAATCTGCAGAATTGTTGTCATATGAATTTACAATCAAAATTAATTAGGCTTTCT ATTTATTATGTTTTTCTACATGATTGCTTTCCTTGAAGTTTTAAATTGTTTCTCAACTAATCGAATATTAATTTAAAAAA TGCACTGTTAGGATCCAATTGCAAGGTAATATTGGAACTATGCGATTCTAGTGTGGGGTTTATAAGGCCTTGTGCTCTCC ACAACAGCTAGCTTTTGTGGTATGATGCTCCCAAGGTTCTTAACAATTAGTATCTGAGCCTTCCACCATGTCTCTCAACT AAAGACGAGCGGCATGGGTGGTGATGCCGGCATTGCACTGTTTGCCTGGGGACTAATCAATGGGCTAGTGCACTGCCAGT CTACGTGGGCATTGGGGCTTTAGAGCGTGGTGTGATGTTAGGATCCAATTGCAAGGAATGAGACTTGAGTCCCATATTGG AAATATAAGATTCTAGTGTGGGGTTTATAAGGCCTTGAGATATCCAACGACAATGGCTAGCCTTTGTGGTATGGTTCTCT CAAGGTTTTAACATGTATTACCCTTCCGTATTACAAATACCCATTCATTGTTTTAAACTTTTACATTAAGATTAATGGCA TGTTTAATCTTGAGATCTGTACAAAAGTTACCTGGAGTGTGAACAGATGCACATATGTGTTTTCAATCTTAACAAAGTCA TTTAAAAAAAAAAGTTTTATTTCCCCATATCTTTACTTACTCAAGACAGAAGACAGGACTGCTTTCTTCGTATTACTATG GTGTTTGTACATAGAGTTTTAACAGGGGTTGCTTCAAAGTGTATCCTCAGTGATTCAAGTTTATTAAGTGTGCATTTGCT TTAAATATCACTCTCCATTTTGTAATTGTGGTACTTTGAAATGAAATCAGCTTTATTAAAAGAAGATATATCATATGCAC ACGCAACAGACTTCATTAAGTGGGATGTGGCTCAGTTGTTGCTGCTGTCTTTGGTTTGTTTTTGTTCGGAAAATATAAGG AAGGAAATTTGGTTGAGTCTAAGGAGAACACACTGATATTAATGGGTTGTAAACTGAGTGAACCAAAAATAATCGGAATC CATTGTAATTAAAATAAACAGATTTGAAATTATGCTTTATGTTTCTTGGAGCTTCTTGTGAAAGCTTAAGTCTTGCATGC TCATTTGTAGTTTGTTTGTGTGATCTTTGTAAGTTGATTCCATAAATTAACATTCATCATTTGTACTCTTCTATGTTTCT TGTTTTTGCTTATTTATTTTGTTGAAATGGTAGCTTTCCAATCATTAGCTAATAAACCAACATAACAGGTCACCTCAAGC TCTGTGAGACTGGTCAGTTCCACAACTAGGGAGCTCCGGAATGAATGGCATGCACCAGAAGGCTATTCAATAAATGTAGC TACTGCAAATGCTACCCAGGTTTGATTCTTTTTTTTAAATGTTAATTTTAGACTATGGTGATATTTGCTTGTTGAATTTG AAACGTAGCTACTGTTAATTTTTGAATTCCCTTGAGCAATGATTTGATGGCTTTTGTAAGCATGAAGGGGAGCATTCCCT GGAGGTTTTCAAAGAGCGATATGGCTCTACTTTTCAAATGCCTTCTTCCAGTATTATTATTTACTTGGCATTTCCTTGGA TTCTTCAATGATGCCTCTCACAATTAGTTTTTACTATATAGTATCAATGAAGCTATGTATAAGTTACCATTTGAGTGATT TAGCTTCAATCTATTTCATTATTTGTGCATTATGCACATTTCAGATGTTGGATTTTACTCCGCACACATTAAGTTTGTAT CGAGTTGGTAATTATTGTTACACCTGGATACAGGTTTTGTTGGCCACAGGAGGTGGGCATTTAGTTTACCTCGAAATTGG AGATGGCATACTACAGGAAGTAAAGCACGCCCAACTGGAGTATGAGGTCTCATGCCTAGACATAAATCCAATTGGTGAAA ACCCCAATCAGAGTCATCTAGCAGCAGTTGGAATGTGGACTGACATAAGTGTTAGAATATTTTCTCTTCCTGACCTGAAT CTCATCACAAAGGAGCATTTAGGAGGAGAGATAATACCTCGATCTGTTCTTCTTTGTGCGTTTGAAGGGGTGCGCTTTCC TTGACCTATCTTTTTGTGTACTGTTTTTTTTTTTGCTTCTGCGTAGGGTTGACTAATTTATTTTTCTGAAATGCCGGAAG ACCATTTGGGGTACTCATTTCCTAAATTCTACTTTTAGAATGGGTTTTTCGGATTTTACACATTTAAATGGTTTTGGGGA ATAAACAAGATCAGCAACATTAATGTCTATTTTACTATTCTGCTCGAGTTACATATTTTTCTAATAATGCTCCAAGGATG AATTGACACATCTCCTAAGCTTCCATCTCATCTTTCTTAACTTCAATGGTAGTTTCCTAGTCTGAAGCTTTCTATTAAAG TGTATTGCTCATTTGCTCTTCATTTTATTCTCCAGATATCTTACTTGCTATGTGCCCTTGGTGATGGTCATCTCTTAAAC TTTATGTTGAACACAAGTTCTGGCGAGTTAACAGATAGGAAAAAGGTCTCTCTTGGGACACAACCTATTACACTGCGGAC TTTCTCATCCAAGAATACTACCCATGTATTTGCCGCATCTGATCGGCCAACTGTGATTTATAGTAGTAACAAAAAATTAC TGTATAGTAATGTGAATCTGAAGGAAGTGAGTCACATGTGCCCTTTCAACTCTGCTGCTATTCCTGACAGGTATATTTGT CTGTTTTAGTTTGACATCCAAGAATGGTTGATTTATCATTTATATCGTATTGTTGTTTCTGGGTTTCGTACTTCGATGCA AAATCCATTATTGGCGATGGTGATGGTGATGTATTCTGCTACTCATAATTTCAACAGTTTGGCAATTGCAAAAGAAGGTG AGCTCACTATTGGCACCATTGATGACATTCAAAAACTTCATATTCGCACAATTCCACTGGGGGAGCATGCACGGCGTATC TGTCACCAGGAACAATCAAGGACTTTTGCTATTTGCAGTTTGAAATACAACCATACAAGTGCTGAAGAATCTGAAAGTCA TTTTGTCCGCTTGTTAGATGACCAGACTTTTGAGTTCATATCAACTTATCCACTTGACACTTACGAGTATGGTTGCTTCA TAATTAGCTGTTCCTTCTCAGATGATAATAACGTGTATTATTGCGTTGGAACAGCTTATGTATTGCCAGAGGAAAGTGAA CCAACCAAGGCAAGTTGAGAAATATATATTCTTTTCAGCTTTGGTCTTGTCAAAGCCTCTGATCCTGATTTGTTGGCCTT TTCTAAACAAATGTAGGGAAGAATTCTTGTTTTTACTGTTGAAGATGGAAAGCTACAACTAATTGCTGAGAAAGAGACAA AAGGAGCTGTTTACTGCTTGAATGCGTTCAATGGTAAATTGCTTGCTGCTATTAATCAAAAAATTCAGCTGTATAAATGG GTGCTCCGGGATGATGGCACCCATGAGTTACAGTCTGAATGCGGACACCATGGACACATCCTAGCTCTATATGTGCAAAC TAGAGGAGATTTCATTGTAGTTGGTGATCTGATGAAATCAATTTCCTTGTTGATCTATAAGGTAAGCCTTTAAGTGGTCT TAATGCTGAAGTTTATCTTCAAATAAATTTACTATCTTCAATGTTAACTTTTCCAACGATGCCATTTCCTTTTTATTCCC ACTATTTTTTGAAAACCTGATAGAAGTCTTTGATTAGTTTCGTTAAATTTTGAACAGTTGTGATCTTATCATTGTGAATG AATAGTTAATTTTCTTGATATTTACTCCATTTTCTTTCGGAATGATAAATTGTTGCTCTTCATTATTTAAGCATGAAGAA GGTGCTATTGAGGAGAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCTGTTGAAATCCTTGATGATGACGTATACCT AGGTACGGAAAATAGTTTCAATCTCTTTACAGTTCGGAAAAATAGTGAAGGTGCTACTGATGAAGAGCGGGGTCGTCTTG AAGTGATTGGTGAGTATCACCTTGGGGAATTTGTCAATCGGTTCCGGCATGGCTCCCTTGTCATGCGCTTGCCGGATTCT GATGTCGGCCAGATTCCAACTGTTATTTTCGGCACCATTAATGGCGTTATCGGGGTAATTGCCTCTCTTCCTCATGAGCA GTATGTTTTCCTGGAGAAGCTCCAGTCAAATTTGAGGAAGGTGATTAAAGGCGTTGGAGGACTGAGCCATGAGCAATGGA GGTCATTTAACAATGAGAAGAAAACTGCGGAAGCCAGAAACTTTTTGGATGGGGATTTGATTGAATCGTTTCTTGATCTT AACCGCAGTAAGATGGATGAGGTTTCCAAGGCATTGGACGTTTCTGTAGAAGAGTTATGCAAGAGAGTGGAAGAGTTGAC TAGGTTGCACTGA
CDS sequence (LotjaGi4g1v0390500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGAATACAGCTTATAAAACTAAATGTACAGCCTGATGCAAAAGGCTCTTATGTGGATGTTTTGGAAAGGTATGT CAATTTGGGGCCAATTGTTGATTTCTGTGTGGTAGACCTTGAAAGGCAAGGCCAAGGTCAGGTTGTAACCTGCTCTGGAG CTTACAAGGATGGCTCTCTTCGTGTTGTCCGTAATGGAATAGGGATCAATGAACAGGCATCTGTAGAACTTCAAGGTATC AAAGGAATGTGGTCACTAAGATCCTCAACAGATGATCCTTTTGACACTTTTCTGGTTGTTAGTTTCATAAGAGATACGAG AATCTTAGCAATGAACATTGAGGATGAGCTGGAAGAAATTGAGATTGAGGGATTCTGTTCTCTAGTACAGACATTGTTTT GCCATGATGCAGTTCACAATCAACTTGTACAAGTCACCTCAAGCTCTGTGAGACTGGTCAGTTCCACAACTAGGGAGCTC CGGAATGAATGGCATGCACCAGAAGGCTATTCAATAAATGTAGCTACTGCAAATGCTACCCAGGTTTTGTTGGCCACAGG AGGTGGGCATTTAGTTTACCTCGAAATTGGAGATGGCATACTACAGGAAGTAAAGCACGCCCAACTGGAGTATGAGGTCT CATGCCTAGACATAAATCCAATTGGTGAAAACCCCAATCAGAGTCATCTAGCAGCAGTTGGAATGTGGACTGACATAAGT GTTAGAATATTTTCTCTTCCTGACCTGAATCTCATCACAAAGGAGCATTTAGGAGGAGAGATAATACCTCGATCTGTTCT TCTTTGTGCGTTTGAAGGGATATCTTACTTGCTATGTGCCCTTGGTGATGGTCATCTCTTAAACTTTATGTTGAACACAA GTTCTGGCGAGTTAACAGATAGGAAAAAGGTCTCTCTTGGGACACAACCTATTACACTGCGGACTTTCTCATCCAAGAAT ACTACCCATGTATTTGCCGCATCTGATCGGCCAACTGTGATTTATAGTAGTAACAAAAAATTACTGTATAGTAATGTGAA TCTGAAGGAAGTGAGTCACATGTGCCCTTTCAACTCTGCTGCTATTCCTGACAGTTTGGCAATTGCAAAAGAAGGTGAGC TCACTATTGGCACCATTGATGACATTCAAAAACTTCATATTCGCACAATTCCACTGGGGGAGCATGCACGGCGTATCTGT CACCAGGAACAATCAAGGACTTTTGCTATTTGCAGTTTGAAATACAACCATACAAGTGCTGAAGAATCTGAAAGTCATTT TGTCCGCTTGTTAGATGACCAGACTTTTGAGTTCATATCAACTTATCCACTTGACACTTACGAGTATGGTTGCTTCATAA TTAGCTGTTCCTTCTCAGATGATAATAACGTGTATTATTGCGTTGGAACAGCTTATGTATTGCCAGAGGAAAGTGAACCA ACCAAGGGAAGAATTCTTGTTTTTACTGTTGAAGATGGAAAGCTACAACTAATTGCTGAGAAAGAGACAAAAGGAGCTGT TTACTGCTTGAATGCGTTCAATGGTAAATTGCTTGCTGCTATTAATCAAAAAATTCAGCTGTATAAATGGGTGCTCCGGG ATGATGGCACCCATGAGTTACAGTCTGAATGCGGACACCATGGACACATCCTAGCTCTATATGTGCAAACTAGAGGAGAT TTCATTGTAGTTGGTGATCTGATGAAATCAATTTCCTTGTTGATCTATAAGCATGAAGAAGGTGCTATTGAGGAGAGAGC TCGTGACTACAATGCAAATTGGATGTCAGCTGTTGAAATCCTTGATGATGACGTATACCTAGGTACGGAAAATAGTTTCA ATCTCTTTACAGTTCGGAAAAATAGTGAAGGTGCTACTGATGAAGAGCGGGGTCGTCTTGAAGTGATTGGTGAGTATCAC CTTGGGGAATTTGTCAATCGGTTCCGGCATGGCTCCCTTGTCATGCGCTTGCCGGATTCTGATGTCGGCCAGATTCCAAC TGTTATTTTCGGCACCATTAATGGCGTTATCGGGGTAATTGCCTCTCTTCCTCATGAGCAGTATGTTTTCCTGGAGAAGC TCCAGTCAAATTTGAGGAAGGTGATTAAAGGCGTTGGAGGACTGAGCCATGAGCAATGGAGGTCATTTAACAATGAGAAG AAAACTGCGGAAGCCAGAAACTTTTTGGATGGGGATTTGATTGAATCGTTTCTTGATCTTAACCGCAGTAAGATGGATGA GGTTTCCAAGGCATTGGACGTTTCTGTAGAAGAGTTATGCAAGAGAGTGGAAGAGTTGACTAGGTTGCACTGA
Protein sequence (LotjaGi4g1v0390500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGIQLIKLNVQPDAKGSYVDVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGI KGMWSLRSSTDDPFDTFLVVSFIRDTRILAMNIEDELEEIEIEGFCSLVQTLFCHDAVHNQLVQVTSSSVRLVSSTTREL RNEWHAPEGYSINVATANATQVLLATGGGHLVYLEIGDGILQEVKHAQLEYEVSCLDINPIGENPNQSHLAAVGMWTDIS VRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFMLNTSSGELTDRKKVSLGTQPITLRTFSSKN TTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAIPDSLAIAKEGELTIGTIDDIQKLHIRTIPLGEHARRIC HQEQSRTFAICSLKYNHTSAEESESHFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSDDNNVYYCVGTAYVLPEESEP TKGRILVFTVEDGKLQLIAEKETKGAVYCLNAFNGKLLAAINQKIQLYKWVLRDDGTHELQSECGHHGHILALYVQTRGD FIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDVYLGTENSFNLFTVRKNSEGATDEERGRLEVIGEYH LGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEQWRSFNNEK KTAEARNFLDGDLIESFLDLNRSKMDEVSKALDVSVEELCKRVEELTRLH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 769 | 766 | 0.0 | – | |
| PANTHER | 4 | 769 | 766 | 0.0 | – | |
| Pfam | 5 | 218 | 214 | 1.5E-56 | – | |
| Gene3D | 5 | 28 | 24 | 1.9E-269 | ||
| Gene3D | 29 | 656 | 628 | 1.9E-269 | ||
| Gene3D | 67 | 384 | 318 | 1.9E-269 | ||
| Coils | 103 | 123 | 21 | - | – | |
| SUPERFAMILY | 148 | 569 | 422 | 6.67E-12 | ||
| Pfam | 426 | 739 | 314 | 4.9E-80 | ||
| Gene3D | 685 | 770 | 86 | 8.5E-31 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi4g1v0390500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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