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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0390800 |
| Transcript ID | LotjaGi4g1v0390800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | phospholipase-like protein (PEARLI 4) family protein; TAIR: AT2G16900.1 phospholipase-like protein (PEARLI 4) family protein; Swiss-Prot: sp|P0DKG4|MCC07_ARATH MATH domain and coiled-coil domain-containing protein At2g42465; TrEMBL-Plants: tr|G7L9N1|G7L9N1_MEDTR Plant phospholipase-like protein; Found in the gene: LotjaGi4g1v0390800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76946530..76948078) extracted from Lotus japonicus Gifu genome v1.2.
TGGGTTTCTCTTAGTTTTTCTCTCTTTTCCTTGCGTTTGGTTTATTTCTAATGCACATGCAACTGATTGCCTCATGTAGA ATATTGAGTCAGAGTCTTGGAAGTGCCCTCCTTCCGTGAGAAAGCATTTGATTCCAGATTCCGTGATGATTTCGGCTCGC CGCACCTCCTTGAGATCCTCAAAGAAACCAATTGAAACTGAAAAAGCTGCAATTTCAGCATGTTCAAAGCCTCAGGCTTC AAGGGAGCTTTTCTCTTCCACTAATGTCTTCCAACAACAGCTTAATCATCCTTCCACCTTGGCACCAGAAAAGAGACATG AAGAGCTTGAACATGTTGGATTTCCTGTTGCTCCAGTGAACTTGACTGCTAATGTACCAGAAATGGAACAAGTGCCTGAG GTTGAAATGTCAATTTCAAATCCCTCCACCTTGGCACCAGAAAAGAGACATGAAGAGCTTGAAAATGTTGGAAATTCTGT TGCTCCAGTGAACTTGACTGCTAATGTACCAGACATGGAACAAGTGCCTGAGGTTGAAATGTCAATTCCAAATCCCTCAA ATCAAATGGAAGGGAAGAATACATTTCAAGCATCAAATAACTTTGGGGGCATAGCAAAGAAGAACCTTAGCAAGTCTTTC TCAGTTGGATCTCCATCCGGTTCTTGCAGCCTCAACATAACTGAAATGGTCAATATGTGGGACGATGATGAAGATGATGA AGTTGATTGTGATGAACATAGCGACACCACCGTTGGTGGATACAAAGTGAAACCAGAATCCAGGCCTATATTAAGGAAAA TTCTAAGCAAGCATGGAGATATTGCTAGGAACTGCACAGTGTTGACAATGACACACCGTTCCTTGTTGTTGGAGTTGATA TGTGACATCATCTCAGAACTTCAAGGGATGAATTTGGGTAGAATCAAAGAATATGACCTTAATAACATGATTGCTCTAGT AAATGATATAAAAAATGTTGAAGTGGACATTGAGTGGCTTCACCTGAGACTAGTTGAGATACTAGAGGCAATACAACTTG TTCATCAGTCTGGCACGCTGAAAGAGAAAAAAGAGATCAACAGAAAATTCATTGAAATTGTGGAGAGCAAGCTGGAAGAA TGTGAAAACCAAAAGAAGGAGGTCAGAGCACAGTTAAGATCACTATATGACAAAGAGACTGAAACCAAGGAGAGACTGGC TAGAGCAATGGATGAGTCAACTAGGATCATGGCGTCAATCAAAGATGCCAAAACTAAAGTCAAACGCTTTCTCCATCGTT CAATGGTTGATGGTTTGATTTAGTTTTATCATTTCATCTCCTTTTCTCTGCTTTATTTTATCCATTGTGGTGATTTTAGG ATTGTTTAATGTGTTGTCCATTATGACTACTATGTTTTTCAATTTTAAAATTTATGCTTAGACTATATAGTTCCAATCTC ATTGGTGAATGTTTGATGGTGGCATGTGATTTGGTTGTAAGAATCAGGATTATATCTCAGTATGTATGGGTGCTTTGAGT CAGCCTGTGATTATAGAAATTCTAAGGTG
CDS sequence (LotjaGi4g1v0390800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCGGCTCGCCGCACCTCCTTGAGATCCTCAAAGAAACCAATTGAAACTGAAAAAGCTGCAATTTCAGCATGTTC AAAGCCTCAGGCTTCAAGGGAGCTTTTCTCTTCCACTAATGTCTTCCAACAACAGCTTAATCATCCTTCCACCTTGGCAC CAGAAAAGAGACATGAAGAGCTTGAACATGTTGGATTTCCTGTTGCTCCAGTGAACTTGACTGCTAATGTACCAGAAATG GAACAAGTGCCTGAGGTTGAAATGTCAATTTCAAATCCCTCCACCTTGGCACCAGAAAAGAGACATGAAGAGCTTGAAAA TGTTGGAAATTCTGTTGCTCCAGTGAACTTGACTGCTAATGTACCAGACATGGAACAAGTGCCTGAGGTTGAAATGTCAA TTCCAAATCCCTCAAATCAAATGGAAGGGAAGAATACATTTCAAGCATCAAATAACTTTGGGGGCATAGCAAAGAAGAAC CTTAGCAAGTCTTTCTCAGTTGGATCTCCATCCGGTTCTTGCAGCCTCAACATAACTGAAATGGTCAATATGTGGGACGA TGATGAAGATGATGAAGTTGATTGTGATGAACATAGCGACACCACCGTTGGTGGATACAAAGTGAAACCAGAATCCAGGC CTATATTAAGGAAAATTCTAAGCAAGCATGGAGATATTGCTAGGAACTGCACAGTGTTGACAATGACACACCGTTCCTTG TTGTTGGAGTTGATATGTGACATCATCTCAGAACTTCAAGGGATGAATTTGGGTAGAATCAAAGAATATGACCTTAATAA CATGATTGCTCTAGTAAATGATATAAAAAATGTTGAAGTGGACATTGAGTGGCTTCACCTGAGACTAGTTGAGATACTAG AGGCAATACAACTTGTTCATCAGTCTGGCACGCTGAAAGAGAAAAAAGAGATCAACAGAAAATTCATTGAAATTGTGGAG AGCAAGCTGGAAGAATGTGAAAACCAAAAGAAGGAGGTCAGAGCACAGTTAAGATCACTATATGACAAAGAGACTGAAAC CAAGGAGAGACTGGCTAGAGCAATGGATGAGTCAACTAGGATCATGGCGTCAATCAAAGATGCCAAAACTAAAGTCAAAC GCTTTCTCCATCGTTCAATGGTTGATGGTTTGATTTAG
Protein sequence (LotjaGi4g1v0390800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISARRTSLRSSKKPIETEKAAISACSKPQASRELFSSTNVFQQQLNHPSTLAPEKRHEELEHVGFPVAPVNLTANVPEM EQVPEVEMSISNPSTLAPEKRHEELENVGNSVAPVNLTANVPDMEQVPEVEMSIPNPSNQMEGKNTFQASNNFGGIAKKN LSKSFSVGSPSGSCSLNITEMVNMWDDDEDDEVDCDEHSDTTVGGYKVKPESRPILRKILSKHGDIARNCTVLTMTHRSL LLELICDIISELQGMNLGRIKEYDLNNMIALVNDIKNVEVDIEWLHLRLVEILEAIQLVHQSGTLKEKKEINRKFIEIVE SKLEECENQKKEVRAQLRSLYDKETETKERLARAMDESTRIMASIKDAKTKVKRFLHRSMVDGLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 380 | 345 | 1.1E-62 | – | |
| PANTHER | 36 | 380 | 345 | 1.1E-62 | – | |
| Pfam | 178 | 378 | 201 | 3.7E-27 | ||
| Coils | 316 | 343 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0390800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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