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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0391400 |
| Transcript ID | LotjaGi4g1v0391400.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin-related family protein; TAIR: AT1G13180.1 Actin-like ATPase superfamily protein; Swiss-Prot: sp|Q9SAF1|ARP3_ARATH Actin-related protein 3; TrEMBL-Plants: tr|A0A072TU70|A0A072TU70_MEDTR Actin-related protein ARP4; Found in the gene: LotjaGi4g1v0391400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77007719..77012371) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACCCCGCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTACCCTTTTCTCCATCTGGGTGTTTTTTT TGCTCTGTTTCAATATTGCCCACCACGTGTTTGTTAAAATTACCCTGTTGGATTTTTTTGATTTTTCGAAGTTCTGTGAT TAGAATTGTGTGAATTCCTGATTGACATGAATTGGGTTATGTTTTTTGTTGCAGGTATACGAAGATGGGGTTTGCTGGTA ATGTTGAGCCATGTTTTATTGTTCCGACAGTGGTTGCGGTTAACGAGTCCTTTCTGAATCAATCGAGGAGCACTTCTAAA GGCAATTGGGTTGCCCAGCACAACGCTGGGGTTATGGCGGATCTTGATTTCTTTATTGGGGATGATGCGCTTTCTAAGTC GCGATCCAGCAGCACTTACAATCTCACTTACCCGATTCGGCATGGCCAGGTTGATAACTGGGACGCCATGGAGCGCTACT GGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCTGAGGATCACTATTTTCTCTTGACGGAGAGTCCGTTGACAGCT CCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAATGTACCTGGACTTTACATTGCTGTGAATTCTGT GCTTGCTCTTGCAGCTGGCTACACAACATCTAAGGTTGGTAATTGGTACTCTGTGAAAAATATTGTGTAGTATGTAGATA GAGTTGGAATTGTGGAGTTGGATGATTAATCTTTAATGTTTTGTTCATTTAAGCTTCTGCAAAATCTCCTCTACAACTTT TCTAGCTAGCTATCGATGCGCAATATGCATAGGATGTTTTATCAACCCCTGCAATTTGACTCTCTTGATATTTTCGCCTG AAAGTGTGATGTGTTGAATATGAACTTTGTGGTAGTTTTGCAATATTACAAGCTCATAGGATAATTTATCAGCTCTCCTT ATAGTGTTGGATGTAAAATGTTAAGTTGGTTATTCGCAATTACTTGCAAACTTGATGACATAGCCCCAGGAGCTATCAAG AAATTCTGTTTCTTGATTTTTATTATTATACCTATATCCTATTTTCAGAATGTTTTCCTTTTAGGCTGATTTGGAATTCT TCTCAGTGTGAGATGACAGGAGTCGTAGTGGATGTTGGAGATGGGTCTACTCATGTTGTGCCTGTCGCAGATGGCTATGT TATTGGGAGTAGTATCAAATCGATTCCTCTTGCTGGAAAGGATGTTACTCTTTTTGTTCAGCAGCTTATGCGGGTAGGCA ATCCTTGTGGTAAAAAGTAGAACTTTATTCTGCTGGTATCTGTTCCTAAATTTTAATATCTGGGAATTGCTTTGAACCAC TTTTTGTTAATATTGAGGGTTCTCACAAATTTCCATTTAGACTAGCTACTGAAACCAGTCATGTCTCATGTGTAAACACT AAAAAATGGAAGAACATTATGTGATGTATTTATGCTAATAGAATTGTTTTTACATGTTTAATAGTTAATAAGTGGAAGTG TAGGTCACTAATTCATGATTGAGTAAAAAATTATTCATGTATTTTGCTTTTCTTTTTTTGCACTTAATGCGATTGTAATA ATCCATATCCAATTGTCAATTTTCAATATTCAGATTCATGAACTGTCTCATGTTGACATTGTTTCATTCAGGAAAGAGGA GAGAATGTACCACCTGAAGATTCTTTTGAAGTGGCTCGTAAAGTAAAGGAAATGTATTGCTACACATGCTCTGACATTGT GAAGGTTGTCTCCATTTTCACCTTTAATGCTTTGGACATAATCATCTGAGGAGTTTGTGATGTGCTGTGCCCTTTGTTTC TTTTAATTTTGTTGAGCCCAGCATTAGGGTGTTTATGAACTTCCTTAATACTTTTAATTGCTTCCCTTTTGTGAAATAAG GGATATCAAGTTGCTTTCTGGACTTATAAATTCTCCTTAATAACAATAGCTCAATTTCTCAGGAATTTAATAAACATGAC AAAGAACCAGCCAAATATATCAAGCAATGGAGAGGCATCAAACCAAAGACAGGGGCTCCATATTCCTGTGATATTGGCTA TGAACGATTTCTTGGCCCTGAGGTTTGTTTGGTGGCTCTACTTTTCTCTATTATGCATACCTAAATTTGTCTTAGAGGGT TCTGGATTGTACATATTTGTATCTACTTGTTTTTTTTTTCTTACCTTTTTTAGCTTTGTGAATACCTGAACCCATATCCT TAATACTGAATTAATTTTGAACTTGATTAGTTCCTACTTCCTACCATCAATACCAACCTGAATTATAGGGGATTTTATGG GAAAATGATAAAAAAAAATTGAAGTGATATTTTTTCATTTTGCCTTGCCCTACCTTTGCCGTGATAAGGTCAAAGTTTGT TCCTTTTCCCTTTTGGTTTATAAAAGAGATCTAATACCTAGTGTGGGGGAGGGGAAGGGAGGCTTTAAAATGTTGGCAAT GTAGCCTGGCTGGGATTTCAACCAGGGATCAACTGATCAAGTTGTCACCTGATCAGCTATAGCTCATGGTGCTCCTTGGG TTTGTTCCTTTAACCTTAACTTTTGAAGAATTCATGAAAATGTAGCTGTAGTAGTGCCTTGTTTTAAGTGTTGAACTTCT CTATGGGTTTGGGACTTAGGTCATTATGTCAACAAGATTGGTGAATTAAGATATCTGTTTGTTTTTTCTATGATTTCTGC AGGTTTTCTTTAATCCTGAGATATATAGCAGTGACTTTAGCACTCCTTTGCCAGTTGTAATAGACAAGTGCATTCAGTCT GCTCCAATTGACACGAGAAGATCATTGTACAAGGTTAGTACCGTAGTACCTTATCTCATTTTACTGGCTGACATTCACAT CAAGTAAACCCTGTGAGAGTGCCTACTTCAGGGGCCTAAATTTTATGATGTGCGGTTTTAACATGATATATGTAAGAGAG AAATGCTAGCAACATACTCTTTTGAATACACTCTTCAACACACTCCCCAGGTTTGATCTATTTTCGGAAAGTCAATGCAT TTGCCTTGTAAATTTATAATTTTCCTAAACTGACCTTTTTAAAAAATAGACAATTATAAGAAGTGTTTGAAGAGTGTGTT GCTAGCATTCCTCTATTTAAAATACTAAATTTTACTGAGCATTGAGTAGTCAGCTTTTACCCTAATATCATGGAACTTCT AAGGCTCATGATTAGCAGAGGGCATTTTCAGTTGTTGTTGGCCCAGATGCAGTAAATTAGTGTTACGTGTTATATGAGTC TACAGTATTTAATATCTGATTTTATGAAGCCTTCTAGTTTACATATTCTTAGCAATTGGTTGAACTCTTTACATCTTGCA TTGTCTTCAATTCAGAATATAGTGTTGTCTGGAGGATCAACCATGTTCAAGGATTTTCACAGGAGGTTGCAACGTGATCT AAAGAAAATTGTTGATGCTCGTGCCCTTTCAGCTGAAACACGTCTAAATGGGGAGATAAAAGTGAGTTAATACATACTTC TTATTTTATCGATGGTGCTCTTTTTCTCTGTCTATATTAACCTTGTTTACACAATTTGTACGACCAAAACAGTCAACCAT GGACACATCATTATTTTTTGTTAAATAATTACGCAAATCTTCGTGCCGCTCAATTTAAAATAATGATGTGTCTGTTTTTG GTTGGTTTGGTTGGCATAAATTGTGCAGACAAGGTCTACACAAGCTTCTCCACATGCTTGGAAGTTGTGACATTGGCATA TTTATGAAAAGCTTGAGTAATTTACTGCTTTGGTCCGGCATTCACCTTTTTTCTTTATTTCCTTTATTTGGAGCCCACAG TCACATCCAGTGGAGGTCAATGTACTCAGCCATCCAATCCAGAGATTTGCAGTTTGGTTTGGGGGTTCTGTGCTTGCATC AACGCCTGAGTTTTTTACGGTATGCATTTTGTTCATTTTATGGGTCAGGAAGGTCAATCCTTGTACCATAATTTCTACTT CTCTATAATGATAATCAGTGTTTCCATTTAGTATGGGATACTTGTTCAGTGACTCACTTTTTTCTCTGACATAATCACAT AAATACTTGGTCCAAAATCTTAATGTGTTCTTTTGACATTTACACATTTGGTCTTAAATTGTTGGTGTTGGATAGTGTGA GTTTGTAGGTTTAGGTTATTCCTTTATTTGTTGGCAGTACATCTTAGATTTGTCCTTGAGAAAGTTCACCTATGTAGTTG TTAATGCCTCTTTGTCTGGCATTGGTAACCTGAGTTGATTTTTCATGTTTTACCACATTGCTCAACAATTCTATGATTGC ATCCAAGTACATAACAAATTATATGGTATTAGTTGCTATTGGGAATATTAAACTGCACCAGTGTAAAAATAAAACAGCAT TTTTTTGCCATCTAGACTATGATGTCTTCTTTTCTTGTGATAATGTCCTTGTTCCAGTCAGACAAGTCCATTATTTCTTA AATGTTTCCTACTTTCCTTCATATAATAGCAGTCTCATACCCTATGCAAAGCTAACCTGTTTTTGTTTTAAAATTTCTGG CCCAATGTGCAGGCTTGTCATACCAAGGCAGAGTATGAAGAATATGGAGCAAGCATTTGCAGGACAAATCCTGTTTTCAA GGGGATGTATTAA
CDS sequence (LotjaGi4g1v0391400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCCGCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTACCCTTTTCTCCATCTGGGTTATGTTTT TTGTTGCAGGTATACGAAGATGGGGTTTGCTGGTAATGTTGAGCCATGTTTTATTGTTCCGACAGTGGTTGCGGTTAACG AGTCCTTTCTGAATCAATCGAGGAGCACTTCTAAAGGCAATTGGGTTGCCCAGCACAACGCTGGGGTTATGGCGGATCTT GATTTCTTTATTGGGGATGATGCGCTTTCTAAGTCGCGATCCAGCAGCACTTACAATCTCACTTACCCGATTCGGCATGG CCAGGTTGATAACTGGGACGCCATGGAGCGCTACTGGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCTGAGGATC ACTATTTTCTCTTGACGGAGAGTCCGTTGACAGCTCCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTT AATGTACCTGGACTTTACATTGCTGTGAATTCTGTGCTTGCTCTTGCAGCTGGCTACACAACATCTAAGTGTGAGATGAC AGGAGTCGTAGTGGATGTTGGAGATGGGTCTACTCATGTTGTGCCTGTCGCAGATGGCTATGTTATTGGGAGTAGTATCA AATCGATTCCTCTTGCTGGAAAGGATGTTACTCTTTTTGTTCAGCAGCTTATGCGGGAAAGAGGAGAGAATGTACCACCT GAAGATTCTTTTGAAGTGGCTCGTAAAGTAAAGGAAATGTATTGCTACACATGCTCTGACATTGTGAAGGAATTTAATAA ACATGACAAAGAACCAGCCAAATATATCAAGCAATGGAGAGGCATCAAACCAAAGACAGGGGCTCCATATTCCTGTGATA TTGGCTATGAACGATTTCTTGGCCCTGAGGTTTTCTTTAATCCTGAGATATATAGCAGTGACTTTAGCACTCCTTTGCCA GTTGTAATAGACAAGTGCATTCAGTCTGCTCCAATTGACACGAGAAGATCATTGTACAAGAATATAGTGTTGTCTGGAGG ATCAACCATGTTCAAGGATTTTCACAGGAGGTTGCAACGTGATCTAAAGAAAATTGTTGATGCTCGTGCCCTTTCAGCTG AAACACGTCTAAATGGGGAGATAAAATCACATCCAGTGGAGGTCAATGTACTCAGCCATCCAATCCAGAGATTTGCAGTT TGGTTTGGGGGTTCTGTGCTTGCATCAACGCCTGAGTTTTTTACGGCTTGTCATACCAAGGCAGAGTATGAAGAATATGG AGCAAGCATTTGCAGGACAAATCCTGTTTTCAAGGGGATGTATTAA
Protein sequence (LotjaGi4g1v0391400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPATSRPAVVIDNGSGYPFLHLGYVFCCRYTKMGFAGNVEPCFIVPTVVAVNESFLNQSRSTSKGNWVAQHNAGVMADL DFFIGDDALSKSRSSSTYNLTYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETF NVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGSTHVVPVADGYVIGSSIKSIPLAGKDVTLFVQQLMRERGENVPP EDSFEVARKVKEMYCYTCSDIVKEFNKHDKEPAKYIKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFSTPLP VVIDKCIQSAPIDTRRSLYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARALSAETRLNGEIKSHPVEVNVLSHPIQRFAV WFGGSVLASTPEFFTACHTKAEYEEYGASICRTNPVFKGMY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 432 | 429 | 5.4E-244 | – | |
| PANTHER | 4 | 432 | 429 | 5.4E-244 | ||
| SUPERFAMILY | 7 | 190 | 184 | 2.04E-37 | ||
| SMART | 7 | 436 | 430 | 4.0E-138 | ||
| Pfam | 30 | 432 | 403 | 3.6E-77 | ||
| Gene3D | 31 | 428 | 398 | 1.5E-130 | – | |
| CDD | 101 | 219 | 119 | 2.92871E-15 | – | |
| Gene3D | 171 | 409 | 239 | 1.5E-130 | – | |
| SUPERFAMILY | 186 | 436 | 251 | 6.91E-72 | ||
| Gene3D | 225 | 323 | 99 | 1.5E-130 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0391400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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