Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0391400 |
| Transcript ID | LotjaGi4g1v0391400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin-related family protein; TAIR: AT1G13180.1 Actin-like ATPase superfamily protein; Swiss-Prot: sp|Q9SAF1|ARP3_ARATH Actin-related protein 3; TrEMBL-Plants: tr|A0A151TKT3|A0A151TKT3_CAJCA Actin-related protein 3; Found in the gene: LotjaGi4g1v0391400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77011623..77012371) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACCCCGCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTACCCTTTTCTCCATCTGGGTGTTTTTTT TGCTCTGTTTCAATATTGCCCACCACGTGTTTGTTAAAATTACCCTGTTGGATTTTTTTGATTTTTCGAAGTTCTGTGAT TAGAATTGTGTGAATTCCTGATTGACATGAATTGGGTTATGTTTTTTGTTGCAGGTATACGAAGATGGGGTTTGCTGGTA ATGTTGAGCCATGTTTTATTGTTCCGACAGTGGTTGCGGTTAACGAGTCCTTTCTGAATCAATCGAGGAGCACTTCTAAA GGCAATTGGGTTGCCCAGCACAACGCTGGGGTTATGGCGGATCTTGATTTCTTTATTGGGGATGATGCGCTTTCTAAGTC GCGATCCAGCAGCACTTACAATCTCACTTACCCGATTCGGCATGGCCAGGTTGATAACTGGGACGCCATGGAGCGCTACT GGCAGCAGTGCATATTCAACTATTTGAGGTGTGATCCTGAGGATCACTATTTTCTCTTGACGGAGAGTCCGTTGACAGCT CCTGAGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAATGTACCTGGACTTTACATTGCTGTGAATTCTGT GCTTGCTCTTGCAGCTGGCTACACAACATCTAAGGTTGGTAATTGGTACTCTGTGAAAAATATTGTGTAGTATGTAGATA GAGTTGGAATTGTGGAGTTGGATGATTAA
CDS sequence (LotjaGi4g1v0391400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCCGCTACTTCTCGTCCAGCTGTAGTCATCGATAATGGCTCCGGGTATACGAAGATGGGGTTTGCTGGTAATGT TGAGCCATGTTTTATTGTTCCGACAGTGGTTGCGGTTAACGAGTCCTTTCTGAATCAATCGAGGAGCACTTCTAAAGGCA ATTGGGTTGCCCAGCACAACGCTGGGGTTATGGCGGATCTTGATTTCTTTATTGGGGATGATGCGCTTTCTAAGTCGCGA TCCAGCAGCACTTACAATCTCACTTACCCGATTCGGCATGGCCAGGTTGATAACTGGGACGCCATGGAGCGCTACTGGCA GCAGTGCATATTCAACTATTTGAGGTGTGATCCTGAGGATCACTATTTTCTCTTGACGGAGAGTCCGTTGACAGCTCCTG AGAGTCGCGAGTATACTGGGGAAATCATGTTTGAGACTTTTAATGTACCTGGACTTTACATTGCTGTGAATTCTGTGCTT GCTCTTGCAGCTGGCTACACAACATCTAAGGTTGGTAATTGGTACTCTGTGAAAAATATTGTGTAG
Protein sequence (LotjaGi4g1v0391400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPATSRPAVVIDNGSGYTKMGFAGNVEPCFIVPTVVAVNESFLNQSRSTSKGNWVAQHNAGVMADLDFFIGDDALSKSR SSSTYNLTYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVL ALAAGYTTSKVGNWYSVKNIV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 170 | 167 | 1.6E-90 | – | |
| PANTHER | 4 | 170 | 167 | 1.6E-90 | ||
| Gene3D | 7 | 179 | 173 | 3.9E-54 | – | |
| SMART | 7 | 180 | 174 | 0.0015 | ||
| Pfam | 7 | 165 | 159 | 7.9E-35 | ||
| SUPERFAMILY | 7 | 166 | 160 | 1.75E-43 | ||
| CDD | 10 | 164 | 155 | 4.87263E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0391400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…