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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0393500 |
Transcript ID | LotjaGi4g1v0393500.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | lysine ketoglutarate reductase trans-splicing protein (DUF707); TAIR: AT1G67850.1 lysine ketoglutarate reductase trans-splicing protein (DUF707); Swiss-Prot: sp|P62420|PGK_THET2 Phosphoglycerate kinase; TrEMBL-Plants: tr|A0A072TV77|A0A072TV77_MEDTR Lysine ketoglutarate reductase trans-splicing protein; Found in the gene: LotjaGi4g1v0393500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77196595..77201411) extracted from Lotus japonicus Gifu genome v1.2.
TCTCAGTTAGGACCAAACGCACTCAACTCTTGTGAATCTCTCTCTCATAGAGACTTGTTATTTCAATCATCCTATAGTAT TTCTTGTATTAGAAAGAAAGTACCTCAATGTTATTAAATTGTGGAGCTTCTAAGCTGTGGATCTCATATGGTTGCGTAAC TTCTTTTGTCAAAGAGACCAGTTAAGTTACTTGCGGAGGTTATTGGGGTAAAGGCACATGCATATCTTAGTTATTGTTAA ATTTTCCAAACAATTGTTGCTTTCTTAATTCAGCTCCTTGTGCTATGTTTCTTAGATTACACTTCTAAGCTCTGCTTTCT AATGTGTTCATTCTCCCGCAATTGTCATCTTATATGCTGGGAAAACTTCAATAGAATCTCATGATGATATGTATGTTGCT ATTCCACTTGAGTTCAGGAAGCGTGGAACACCTTCATAGAACTAGAAGTAAAACAAAACTGATATAATACATGAGTGTTG TAATGCCAAGGTATAATATTTTACTCTCATACCATGTTATTTTCATATGGTTGTTTTCAATTGTTTCTGGTTCCAATTAT TAATGCTTCTGATTGTATATTCTTTGCACCTTAAGCAGGTCTTGTATTCATTTAACAAGTATCTTGGTTTCTTATATGGA GGAAACAATCAGAAAATATTGGATATAATGGGGACCTATACTCGCAGGTCTAGCCTCTAATCTTTGGAGATAGCCAATTT TGCTGTTCTGTCTGTTCATTAGAGGTTTAGCATATGCTATAGTAATTCATCTGAAGTGTCATTTGCATCTCTTTGGGCTG CAGGTTTACTAAGAGAAAAACAAATGAAAGCATGAAGAGTATTGTGATATTTTTCTTTGGAGGATTTTTTGGCTTAATTA TAGGAGTTTCACTCCCAACGTTTTCTATAACAAAGGTGCGGAAATAGAGAATCTTCTTTCTTCTGTACCTCATGCTTCAG TGAACTTTTGGAATTTTGATGATACTTAATGTAATAATGGAACTCTGACGGTTCTTAAAAATTTTCAGCTGAATATCCCT TCCAGCCTGCTTCCCTCCATTGATCTGTCTTGCATTCGGGGTAGCAATGCGTGGTCTTTCATGAAGAATGATAACAGCAC CTCATCCCAAGATCAGTTACTAGATGACACAAGGGTATGCTCCTTATCCTGTCATTCTTGTGAACGACATCAGTAGTTCT TGGGTTTGTTGCTGTGACAGGGTATTCATATTAAGTAGAGCGGAAATTCAGATCCTATGAGCAAATAGAATGCGGAAGTA ATTGGTTTTAGATGGAATTAGAGCTGTTTACTTTCCTGACCAAAATATTATCCAAATGTAAGGAAGAGAATAAGATGTTA CTAAAATTTGCCATGCCTATCTGACAAAAGTGGAAAAGGAAAATTGAATATTGGAAAATAAGGATCAGAAGGCCTCTTGC TTACTTTTTTACTCCTTATCCCCTTGTTCTTTTTTAATAAATTATAATATATCATTGTTGAAAGGTTTGAGCTGTGATTT TATATGTAATATATGAAATATGACTTGTTCAAGTCTGTATGTATGATCAGACAATTACTACTTGTTCATGATTGTGTGCA GATTTGGGTTCCAACAAATCCAAGGGGTGCAGAAAGATTAGCTCCAGGGATTGTTCAAGCACAATCGGACTTTTATTTGC GCAGATTGTGGGGTATTCCCAGTGAGGTGAGTATCATAATACTGTTTATGTGCGCAACGTAGCTACACCTTCCAAAGGTC GTATGAAAGGGTTGTCTAACTTACTTCACGTGATCAATATATTAAGATTCTGTTAAGCATTATGCTATAGTGACAGAAAA CCTGCTTATCACGCATTTTCCTTCTAGCTTTATTTTACTTCTTTGTTTTTAGGATAATCTTAACTTTTTTCCTCTAGGGG TACCTCTGATATTTTTGTTTTAGTTAGGTTTTCTATATACAGAGAATTTGATTAAGTTGCTACTTTCAGGATTTACCCTT TAAGCCAAAGTACCTTGTGACCTTCACTGTCGGGATTGAGCAGAAAAAGAATATTGATGCAGCTGTGAAAAAGGTTTCCT CTCTCTCTTTCTCTTTTCTTAGGCTTGTGGTATGTGTCTTTAAACTACATATGCATTTCACTTGAACAGTTTTCAAAGGA CTTCACAATCCTTCTATTTCATTATGATGGCCGAACTACCGAATGGGATGAGTTTGAGTGGTCAAAACAAGCTATTCATA TCAGCATCTACAAACAAACCAAATGGTAAAATTCCTCCGCTTACTCAAAAGTTTTGGATGACAAATTTTCGTGGTGACAT TTATTGTTTAAATTGTTTACCGAACACAGTGGTCTATTTTCTTATTCATCCTATTAGGTGGTATGCCAAGCGGTTTCTGC ATCCAGACATCGTGGCATCATATGAGTATATTTTCATGTGGGATGAAGACTTGGGAGTTGAGCATTTTAATGCAGAAGAG TGAGTGTTAGATATGATATATATTTTCTCAAAGTTTTAGCTTTGGTTTTGTCTTATAAGACCCCTAATTTCAACTGCAGA TACCTAAAACTGGTGAGGAAGCATCGCTTGGAGATTTCACAGCCTGCTTTGGAACCTAATAGTATGAAAGCGGTGTTATG GAATATGACAAAGAAAAGAGAAAATAGTGAAGTTCACAAGTAAGAAATGGGAACGCCGCATAGTTTTATACTTGTGTTAA TTGTTATGTAAAGGAATGTGCACTTATTGACTGCTAAATCCTTTGATTTTTATTAGAGAAGCAGAGGAGAAACCAGGGAA GTGTAAGTACCCACTTCTGCCTCCATGTGCAGCGTAAGTTTCTGTTAGTACTATTTTTTCAATTTTTTCTTTGTTGAGTA CAAATTTTTGTTTTATTTATAGCTCTCACACCATGCTGTTTCTAATTGTGTCTGAATGCAGGTTTGTTGAGATTATGGCT CCAGTCTTTTCAAGAGATGCATGGCGCTGTGTGTGGCATATGATTCAGGTTCAACGGTTACTCCTTTATGTTTTTCGTTT CAGATATCATTGAGTAATTGTTGATGGCTTCTAATAAATTGTGATTGTAATTGCAGAATGAATTTGTTCATGGCTGGGGT CTTGATTTTGCTTTTAGAAAATGTGTTGAGGTAAGTCTATTACCTGATTACTACTTCAATTATATGCTATGTAACATTTA AATTATACTAAATACTTCCTATGATATGTATAGCCTGCTCATGAGAAGATTGGAGTTGTTGATGCTCAGTGGATTGTTCA CCAAGGCATTCCCTCACTAGGGAACCAGGTAACTTTCTTTTTTCATGATTCTTTCTGTTACATTTGACGTTAATTTTTTT CACTCAAATGCAGCTTTATATTCAGTTTTCTTCTTTGCTTTGTAGGGAGAAGAACAAACTGGGAAACCGGCATGGCGAGC GGTATGTTATGCAAGTTTCATGATCAATAGTTGTTTAGGATCCTCTTTCTCCATCATATATGTTGCATTTTGCTTGAAAA TTCTTCTACAATTGATTTTAAAGTAAAAATTAATTATGGGGAGAAGCTTTTGTTAGTCTGAATACCATAATTGATTCTGA CGAAAAATAAGCTGATCAAAACGTGCTATAGAATTGTTAACTTAAGGCCTTAACTTAATTGATCAAGAAGCTGTGTTATC ATATAGTTTCTTTCATGGACTTTGATTCTGTGATAAGTATGTTAATATTTACATGGTAATGGTGGGCAGGTGAAAGAGAG GTGTGGCATGGAGTGGAGGATGTTCCAAGGTCGGTTGACAAATGCAGAAAAGGGTTATTACAAGTCCAAGGGAATTGATT TTTCTGACTTGCTTGTTCATAATTAGGGGGAAAATGGTCAAATTCTTACACAGCCATTGGCTTCAGTTGTTTTGTATTTT CACATTAACTTTTTATATTTAATCTCTTGAAGGTTTTGACACTAATTACTTGAGATATGAGACTACATATATAGAAACAC TCAATGTGAAGAAAATCATACTTATTACTTACCGTCGAACTTATGTATATTTGATAATAGTGAATAAATACAAGTCCAAT TAAGACAAGTTCAAAACAGAAGAAAGCAGCAGAATCCTTTACAAAATCTGATAAGCAGGTTATATAATCTTTCTAATTTT TTCCTTGTGTATATTTAAGTCATCGACGCGTTTGAGTTTCGTGAAATATCTTGATTCATTCAGAGTCAAAACACACAATT TTCTATAATATAATGTATTATTCATTGTTATTATTTTACATTTCATACTGCAATCTGTCAAATTTCACATCATCTGAGGA CTTAGAAGTGAAGATGAAAATTAAGGGGTGAGTTTTTCATGAAGTTTATTTAAACAAATCTCATCCCAAAATCTTTCACC CATTTTAACAAATGCATCAAATTAACCAACCAAAACTAGTACATATATGATGATAACTTTGCACTTGAGGCCCCTAAATA GATAGATATTAGAGGCTCAAACATCCTTCATTTTTGACATGAGCCTTGCTAACTCCATTCTCTTGTGCTCATGCTGAATA AAAGCCTCAGCTTCTTCATTCACATCTTCATCAGCATTCTGATAACTGAACCTGGGACCTTGTCGAACAGCCCCAATATT CTCGGTCATGCGAGTCGTCTCGTAGTCGGTTCTGAAAGCCACACGATCCTTTTGATGATGATGATGCTTTGGATGTGCTG CAGGTTGCTCAAGTACATTGATTTCGTACCAATTGTAAGGATATGTGTTGTGGTGGTGTTTGTGATTTTGGTATGCCATT TTTGAGGATGTTTTATC
CDS sequence (LotjaGi4g1v0393500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGACCTATACTCGCAGGTTTACTAAGAGAAAAACAAATGAAAGCATGAAGAGTATTGTGATATTTTTCTTTGGAGG ATTTTTTGGCTTAATTATAGGAGTTTCACTCCCAACGTTTTCTATAACAAAGCTGAATATCCCTTCCAGCCTGCTTCCCT CCATTGATCTGTCTTGCATTCGGGGTAGCAATGCGTGGTCTTTCATGAAGAATGATAACAGCACCTCATCCCAAGATCAG TTACTAGATGACACAAGGATTTGGGTTCCAACAAATCCAAGGGGTGCAGAAAGATTAGCTCCAGGGATTGTTCAAGCACA ATCGGACTTTTATTTGCGCAGATTGTGGGGTATTCCCAGTGAGGATTTACCCTTTAAGCCAAAGTACCTTGTGACCTTCA CTGTCGGGATTGAGCAGAAAAAGAATATTGATGCAGCTGTGAAAAAGTTTTCAAAGGACTTCACAATCCTTCTATTTCAT TATGATGGCCGAACTACCGAATGGGATGAGTTTGAGTGGTCAAAACAAGCTATTCATATCAGCATCTACAAACAAACCAA ATGGTGGTATGCCAAGCGGTTTCTGCATCCAGACATCGTGGCATCATATGAGTATATTTTCATGTGGGATGAAGACTTGG GAGTTGAGCATTTTAATGCAGAAGAATACCTAAAACTGGTGAGGAAGCATCGCTTGGAGATTTCACAGCCTGCTTTGGAA CCTAATAGTATGAAAGCGGTGTTATGGAATATGACAAAGAAAAGAGAAAATAGTGAAGTTCACAAAGAAGCAGAGGAGAA ACCAGGGAAGTGTAAGTACCCACTTCTGCCTCCATGTGCAGCGTTTGTTGAGATTATGGCTCCAGTCTTTTCAAGAGATG CATGGCGCTGTGTGTGGCATATGATTCAGAATGAATTTGTTCATGGCTGGGGTCTTGATTTTGCTTTTAGAAAATGTGTT GAGCCTGCTCATGAGAAGATTGGAGTTGTTGATGCTCAGTGGATTGTTCACCAAGGCATTCCCTCACTAGGGAACCAGGG AGAAGAACAAACTGGGAAACCGGCATGGCGAGCGGTGAAAGAGAGGTGTGGCATGGAGTGGAGGATGTTCCAAGGTCGGT TGACAAATGCAGAAAAGGGTTATTACAAGTCCAAGGGAATTGATTTTTCTGACTTGCTTGTTCATAATTAG
Protein sequence (LotjaGi4g1v0393500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTYTRRFTKRKTNESMKSIVIFFFGGFFGLIIGVSLPTFSITKLNIPSSLLPSIDLSCIRGSNAWSFMKNDNSTSSQDQ LLDDTRIWVPTNPRGAERLAPGIVQAQSDFYLRRLWGIPSEDLPFKPKYLVTFTVGIEQKKNIDAAVKKFSKDFTILLFH YDGRTTEWDEFEWSKQAIHISIYKQTKWWYAKRFLHPDIVASYEYIFMWDEDLGVEHFNAEEYLKLVRKHRLEISQPALE PNSMKAVLWNMTKKRENSEVHKEAEEKPGKCKYPLLPPCAAFVEIMAPVFSRDAWRCVWHMIQNEFVHGWGLDFAFRKCV EPAHEKIGVVDAQWIVHQGIPSLGNQGEEQTGKPAWRAVKERCGMEWRMFQGRLTNAEKGYYKSKGIDFSDLLVHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 19 | 19 | - | – | |
PANTHER | 1 | 393 | 393 | 1.1E-243 | – | |
PANTHER | 1 | 393 | 393 | 1.1E-243 | ||
TMHMM | 20 | 42 | 23 | - | – | |
Phobius | 20 | 40 | 21 | - | – | |
Phobius | 41 | 396 | 356 | - | – | |
Pfam | 91 | 379 | 289 | 8.8E-135 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0393500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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