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LotjaGi4g1v0393500.3

Overview

Field Value
Gene ID LotjaGi4g1v0393500
Transcript ID LotjaGi4g1v0393500.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description lysine ketoglutarate reductase trans-splicing protein (DUF707); TAIR: AT1G67850.1 lysine ketoglutarate reductase trans-splicing protein (DUF707); Swiss-Prot: sp|P62420|PGK_THET2 Phosphoglycerate kinase; TrEMBL-Plants: tr|A0A072TV77|A0A072TV77_MEDTR Lysine ketoglutarate reductase trans-splicing protein; Found in the gene: LotjaGi4g1v0393500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:77196596..77201423) extracted from Lotus japonicus Gifu genome v1.2.

CTCAGTTAGGACCAAACGCACTCAACTCTTGTGAATCTCTCTCTCATAGAGACTTGTTATTTCAATCATCCTATAGTATT TCTTGTATTAGAAAGAAAGTACCTCAATGTTATTAAATTGTGGAGCTTCTAAGCTGTGGATCTCATATGGTTGCGTAACT TCTTTTGTCAAAGAGACCAGTTAAGTTACTTGCGGAGGTTATTGGGGTAAAGGCACATGCATATCTTAGTTATTGTTAAA TTTTCCAAACAATTGTTGCTTTCTTAATTCAGCTCCTTGTGCTATGTTTCTTAGATTACACTTCTAAGCTCTGCTTTCTA ATGTGTTCATTCTCCCGCAATTGTCATCTTATATGCTGGGAAAACTTCAATAGAATCTCATGATGATATGTATGTTGCTA TTCCACTTGAGTTCAGGAAGCGTGGAACACCTTCATAGAACTAGAAGTAAAACAAAACTGATATAATACATGAGTGTTGT AATGCCAAGGTATAATATTTTACTCTCATACCATGTTATTTTCATATGGTTGTTTTCAATTGTTTCTGGTTCCAATTATT AATGCTTCTGATTGTATATTCTTTGCACCTTAAGCAGGTCTTGTATTCATTTAACAAGTATCTTGGTTTCTTATATGGAG GAAACAATCAGAAAATATTGGATATAATGGGGACCTATACTCGCAGGTCTAGCCTCTAATCTTTGGAGATAGCCAATTTT GCTGTTCTGTCTGTTCATTAGAGGTTTAGCATATGCTATAGTAATTCATCTGAAGTGTCATTTGCATCTCTTTGGGCTGC AGGTTTACTAAGAGAAAAACAAATGAAAGCATGAAGAGTATTGTGATATTTTTCTTTGGAGGATTTTTTGGCTTAATTAT AGGAGTTTCACTCCCAACGTTTTCTATAACAAAGGTGCGGAAATAGAGAATCTTCTTTCTTCTGTACCTCATGCTTCAGT GAACTTTTGGAATTTTGATGATACTTAATGTAATAATGGAACTCTGACGGTTCTTAAAAATTTTCAGCTGAATATCCCTT CCAGCCTGCTTCCCTCCATTGATCTGTCTTGCATTCGGGGTAGCAATGCGTGGTCTTTCATGAAGAATGATAACAGCACC TCATCCCAAGATCAGTTACTAGATGACACAAGGGTATGCTCCTTATCCTGTCATTCTTGTGAACGACATCAGTAGTTCTT GGGTTTGTTGCTGTGACAGGGTATTCATATTAAGTAGAGCGGAAATTCAGATCCTATGAGCAAATAGAATGCGGAAGTAA TTGGTTTTAGATGGAATTAGAGCTGTTTACTTTCCTGACCAAAATATTATCCAAATGTAAGGAAGAGAATAAGATGTTAC TAAAATTTGCCATGCCTATCTGACAAAAGTGGAAAAGGAAAATTGAATATTGGAAAATAAGGATCAGAAGGCCTCTTGCT TACTTTTTTACTCCTTATCCCCTTGTTCTTTTTTAATAAATTATAATATATCATTGTTGAAAGGTTTGAGCTGTGATTTT ATATGTAATATATGAAATATGACTTGTTCAAGTCTGTATGTATGATCAGACAATTACTACTTGTTCATGATTGTGTGCAG ATTTGGGTTCCAACAAATCCAAGGGGTGCAGAAAGATTAGCTCCAGGGATTGTTCAAGCACAATCGGACTTTTATTTGCG CAGATTGTGGGGTATTCCCAGTGAGGTGAGTATCATAATACTGTTTATGTGCGCAACGTAGCTACACCTTCCAAAGGTCG TATGAAAGGGTTGTCTAACTTACTTCACGTGATCAATATATTAAGATTCTGTTAAGCATTATGCTATAGTGACAGAAAAC CTGCTTATCACGCATTTTCCTTCTAGCTTTATTTTACTTCTTTGTTTTTAGGATAATCTTAACTTTTTTCCTCTAGGGGT ACCTCTGATATTTTTGTTTTAGTTAGGTTTTCTATATACAGAGAATTTGATTAAGTTGCTACTTTCAGGATTTACCCTTT AAGCCAAAGTACCTTGTGACCTTCACTGTCGGGATTGAGCAGAAAAAGAATATTGATGCAGCTGTGAAAAAGGTTTCCTC TCTCTCTTTCTCTTTTCTTAGGCTTGTGGTATGTGTCTTTAAACTACATATGCATTTCACTTGAACAGTTTTCAAAGGAC TTCACAATCCTTCTATTTCATTATGATGGCCGAACTACCGAATGGGATGAGTTTGAGTGGTCAAAACAAGCTATTCATAT CAGCATCTACAAACAAACCAAATGGTAAAATTCCTCCGCTTACTCAAAAGTTTTGGATGACAAATTTTCGTGGTGACATT TATTGTTTAAATTGTTTACCGAACACAGTGGTCTATTTTCTTATTCATCCTATTAGGTGGTATGCCAAGCGGTTTCTGCA TCCAGACATCGTGGCATCATATGAGTATATTTTCATGTGGGATGAAGACTTGGGAGTTGAGCATTTTAATGCAGAAGAGT GAGTGTTAGATATGATATATATTTTCTCAAAGTTTTAGCTTTGGTTTTGTCTTATAAGACCCCTAATTTCAACTGCAGAT ACCTAAAACTGGTGAGGAAGCATCGCTTGGAGATTTCACAGCCTGCTTTGGAACCTAATAGTATGAAAGCGGTGTTATGG AATATGACAAAGAAAAGAGAAAATAGTGAAGTTCACAAGTAAGAAATGGGAACGCCGCATAGTTTTATACTTGTGTTAAT TGTTATGTAAAGGAATGTGCACTTATTGACTGCTAAATCCTTTGATTTTTATTAGAGAAGCAGAGGAGAAACCAGGGAAG TGTAAGTACCCACTTCTGCCTCCATGTGCAGCGTAAGTTTCTGTTAGTACTATTTTTTCAATTTTTTCTTTGTTGAGTAC AAATTTTTGTTTTATTTATAGCTCTCACACCATGCTGTTTCTAATTGTGTCTGAATGCAGGTTTGTTGAGATTATGGCTC CAGTCTTTTCAAGAGATGCATGGCGCTGTGTGTGGCATATGATTCAGGTTCAACGGTTACTCCTTTATGTTTTTCGTTTC AGATATCATTGAGTAATTGTTGATGGCTTCTAATAAATTGTGATTGTAATTGCAGAATGAATTTGTTCATGGCTGGGGTC TTGATTTTGCTTTTAGAAAATGTGTTGAGGTAAGTCTATTACCTGATTACTACTTCAATTATATGCTATGTAACATTTAA ATTATACTAAATACTTCCTATGATATGTATAGCCTGCTCATGAGAAGATTGGAGTTGTTGATGCTCAGTGGATTGTTCAC CAAGGCATTCCCTCACTAGGGAACCAGGTAACTTTCTTTTTTCATGATTCTTTCTGTTACATTTGACGTTAATTTTTTTC ACTCAAATGCAGCTTTATATTCAGTTTTCTTCTTTGCTTTGTAGGGAGAAGAACAAACTGGGAAACCGGCATGGCGAGCG GTATGTTATGCAAGTTTCATGATCAATAGTTGTTTAGGATCCTCTTTCTCCATCATATATGTTGCATTTTGCTTGAAAAT TCTTCTACAATTGATTTTAAAGTAAAAATTAATTATGGGGAGAAGCTTTTGTTAGTCTGAATACCATAATTGATTCTGAC GAAAAATAAGCTGATCAAAACGTGCTATAGAATTGTTAACTTAAGGCCTTAACTTAATTGATCAAGAAGCTGTGTTATCA TATAGTTTCTTTCATGGACTTTGATTCTGTGATAAGTATGTTAATATTTACATGGTAATGGTGGGCAGGTGAAAGAGAGG TGTGGCATGGAGTGGAGGATGTTCCAAGGTCGGTTGACAAATGCAGAAAAGGGTTATTACAAGTCCAAGGGAATTGATTT TTCTGACTTGCTTGTTCATAATTAGGGGGAAAATGGTCAAATTCTTACACAGCCATTGGCTTCAGTTGTTTTGTATTTTC ACATTAACTTTTTATATTTAATCTCTTGAAGGTTTTGACACTAATTACTTGAGATATGAGACTACATATATAGAAACACT CAATGTGAAGAAAATCATACTTATTACTTACCGTCGAACTTATGTATATTTGATAATAGTGAATAAATACAAGTCCAATT AAGACAAGTTCAAAACAGAAGAAAGCAGCAGAATCCTTTACAAAATCTGATAAGCAGGTTATATAATCTTTCTAATTTTT TCCTTGTGTATATTTAAGTCATCGACGCGTTTGAGTTTCGTGAAATATCTTGATTCATTCAGAGTCAAAACACACAATTT TCTATAATATAATGTATTATTCATTGTTATTATTTTACATTTCATACTGCAATCTGTCAAATTTCACATCATCTGAGGAC TTAGAAGTGAAGATGAAAATTAAGGGGTGAGTTTTTCATGAAGTTTATTTAAACAAATCTCATCCCAAAATCTTTCACCC ATTTTAACAAATGCATCAAATTAACCAACCAAAACTAGTACATATATGATGATAACTTTGCACTTGAGGCCCCTAAATAG ATAGATATTAGAGGCTCAAACATCCTTCATTTTTGACATGAGCCTTGCTAACTCCATTCTCTTGTGCTCATGCTGAATAA AAGCCTCAGCTTCTTCATTCACATCTTCATCAGCATTCTGATAACTGAACCTGGGACCTTGTCGAACAGCCCCAATATTC TCGGTCATGCGAGTCGTCTCGTAGTCGGTTCTGAAAGCCACACGATCCTTTTGATGATGATGATGCTTTGGATGTGCTGC AGGTTGCTCAAGTACATTGATTTCGTACCAATTGTAAGGATATGTGTTGTGGTGGTGTTTGTGATTTTGGTATGCCATTT TTGAGGATGTTTTATCAATCACAAGTTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0393500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGACCTATACTCGCAGGTTTACTAAGAGAAAAACAAATGAAAGCATGAAGAGTATTGTGATATTTTTCTTTGGAGG ATTTTTTGGCTTAATTATAGGAGTTTCACTCCCAACGTTTTCTATAACAAAGCTGAATATCCCTTCCAGCCTGCTTCCCT CCATTGATCTGTCTTGCATTCGGGGTAGCAATGCGTGGTCTTTCATGAAGAATGATAACAGCACCTCATCCCAAGATCAG TTACTAGATGACACAAGGATTTGGGTTCCAACAAATCCAAGGGGTGCAGAAAGATTAGCTCCAGGGATTGTTCAAGCACA ATCGGACTTTTATTTGCGCAGATTGTGGGGTATTCCCAGTGAGGATTTACCCTTTAAGCCAAAGTACCTTGTGACCTTCA CTGTCGGGATTGAGCAGAAAAAGAATATTGATGCAGCTGTGAAAAAGTTTTCAAAGGACTTCACAATCCTTCTATTTCAT TATGATGGCCGAACTACCGAATGGGATGAGTTTGAGTGGTCAAAACAAGCTATTCATATCAGCATCTACAAACAAACCAA ATGGTGGTATGCCAAGCGGTTTCTGCATCCAGACATCGTGGCATCATATGAGTATATTTTCATGTGGGATGAAGACTTGG GAGTTGAGCATTTTAATGCAGAAGAATACCTAAAACTGGTGAGGAAGCATCGCTTGGAGATTTCACAGCCTGCTTTGGAA CCTAATAGTATGAAAGCGGTGTTATGGAATATGACAAAGAAAAGAGAAAATAGTGAAGTTCACAAAGAAGCAGAGGAGAA ACCAGGGAAGTGTAAGTACCCACTTCTGCCTCCATGTGCAGCGTTTGTTGAGATTATGGCTCCAGTCTTTTCAAGAGATG CATGGCGCTGTGTGTGGCATATGATTCAGAATGAATTTGTTCATGGCTGGGGTCTTGATTTTGCTTTTAGAAAATGTGTT GAGCCTGCTCATGAGAAGATTGGAGTTGTTGATGCTCAGTGGATTGTTCACCAAGGCATTCCCTCACTAGGGAACCAGGG AGAAGAACAAACTGGGAAACCGGCATGGCGAGCGGTGAAAGAGAGGTGTGGCATGGAGTGGAGGATGTTCCAAGGTCGGT TGACAAATGCAGAAAAGGGTTATTACAAGTCCAAGGGAATTGATTTTTCTGACTTGCTTGTTCATAATTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0393500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGTYTRRFTKRKTNESMKSIVIFFFGGFFGLIIGVSLPTFSITKLNIPSSLLPSIDLSCIRGSNAWSFMKNDNSTSSQDQ LLDDTRIWVPTNPRGAERLAPGIVQAQSDFYLRRLWGIPSEDLPFKPKYLVTFTVGIEQKKNIDAAVKKFSKDFTILLFH YDGRTTEWDEFEWSKQAIHISIYKQTKWWYAKRFLHPDIVASYEYIFMWDEDLGVEHFNAEEYLKLVRKHRLEISQPALE PNSMKAVLWNMTKKRENSEVHKEAEEKPGKCKYPLLPPCAAFVEIMAPVFSRDAWRCVWHMIQNEFVHGWGLDFAFRKCV EPAHEKIGVVDAQWIVHQGIPSLGNQGEEQTGKPAWRAVKERCGMEWRMFQGRLTNAEKGYYKSKGIDFSDLLVHN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 19 19 - –
PANTHER
PTHR31210:SF52
1 393 393 1.1E-243 –
PANTHER
PTHR31210
1 393 393 1.1E-243
IPR007877
TMHMM
TMhelix
20 42 23 - –
Phobius
TRANSMEMBRANE
20 40 21 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
41 396 356 - –
Pfam
PF05212
91 379 289 8.8E-135
IPR007877

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0393500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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