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LotjaGi4g1v0393600.2

Overview

Field Value
Gene ID LotjaGi4g1v0393600
Transcript ID LotjaGi4g1v0393600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase; TAIR: AT1G67880.1 beta-1,4-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|Q02527|MGAT3_RAT Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase; TrEMBL-Plants: tr|A0A0B2PB24|A0A0B2PB24_GLYSO Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi4g1v0393600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:77204556..77205725) extracted from Lotus japonicus Gifu genome v1.2.

ACAGCTTGCATTGTCCATTGATTTGAGGGATTTCTTTTCGCTGTTTGCTTACCTGTTTGTTCCTTAATTATGCAGGAATC AAGTCAAGCATCGGGCATGTCAAGAATCCGTTGCATATTGCGTGGTTTGGATGTGAAAACCTATATATTCCTCTTTGCGG TTGCCCCTATGTGCATATTTGGAATATATATACATGGGCAGAAGATCTCTTACTTTCTGCGGCCTCTATGGGAAAAACCA CCTAAGCCGTTCAATGTCATTCCTCATTACTATAATGATAATGTTACCATGGAGAATCTCTGCAGACTTCATGGCTGGGG AGTTCGCGAGTATCCAAGGCGTGTTTATGATGCTGTGTTGTTTAGCAATGAGATTGAAATACTTACGTTGCGTTGGAAAG AATTGTACCCGTACATAAATGAATTTGTGCTCCTGGAGTCAAATTCTACATTTACTGGATTGCCTAAGCCTCTGGTTTTC AATGGCAATAGGGAGCAGTTCAAATTCGTTGAGCCTCGGTTAACTTATGGGACTATTGGTGGGAGATTTAAGAAAGGAGA AAACCCATTTGTTGAGGAGGCATATCAGCGTGTGGCATTGGACCAACTCCTCAAGATAGCTGGTATTACAGATGATGACT TGTTGATCATGTCTGATGTGGATGAGATACCAAGTGCTCACACTATCAACCTCTTGAGGTGGTGTGATGAAGTACCACAA ATCCTTCATCTACAGCTGAAGAATTATCTCTATTCATTCGAGTTTCGTCTGGATGATAAGAGCTGGAGGGCTTCAATTCA CAGGTATCAGACCGGCAAGACAAGGTATGCACATTATCGCCAGTCTGACTTGTTACTGGCAGATGCTGGTTGGCATTGTA GCTTTTGCTTCCGCCGAATCAGCGATTTTATTTTCAAGATGAAAGCCTACAGCCATTATGATAGAGTAAAGTTCTCTCAT TATTTGAATCCCGCGAGAATTCAGAGAGTAATCTGCAAAGGGGATGACTTATTTGATATGCTACCTGAGGAGTACACTTT CAAGGATATCATTGGTAAAATGGGACCAATACCCCATTCCTATTCTGCAGTTCATCTTCCTGCTTTCCTTCTAGAAAATT TCGACAAGTATAAATTTCTCTTGCCTGGAAACTGCATAAGAGAGAGATGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0393600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGGAATCAAGTCAAGCATCGGGCATGTCAAGAATCCGTTGCATATTGCGTGGTTTGGATGTGAAAACCTATATATT CCTCTTTGCGGTTGCCCCTATGTGCATATTTGGAATATATATACATGGGCAGAAGATCTCTTACTTTCTGCGGCCTCTAT GGGAAAAACCACCTAAGCCGTTCAATGTCATTCCTCATTACTATAATGATAATGTTACCATGGAGAATCTCTGCAGACTT CATGGCTGGGGAGTTCGCGAGTATCCAAGGCGTGTTTATGATGCTGTGTTGTTTAGCAATGAGATTGAAATACTTACGTT GCGTTGGAAAGAATTGTACCCGTACATAAATGAATTTGTGCTCCTGGAGTCAAATTCTACATTTACTGGATTGCCTAAGC CTCTGGTTTTCAATGGCAATAGGGAGCAGTTCAAATTCGTTGAGCCTCGGTTAACTTATGGGACTATTGGTGGGAGATTT AAGAAAGGAGAAAACCCATTTGTTGAGGAGGCATATCAGCGTGTGGCATTGGACCAACTCCTCAAGATAGCTGGTATTAC AGATGATGACTTGTTGATCATGTCTGATGTGGATGAGATACCAAGTGCTCACACTATCAACCTCTTGAGGTGGTGTGATG AAGTACCACAAATCCTTCATCTACAGCTGAAGAATTATCTCTATTCATTCGAGTTTCGTCTGGATGATAAGAGCTGGAGG GCTTCAATTCACAGGTATCAGACCGGCAAGACAAGGTATGCACATTATCGCCAGTCTGACTTGTTACTGGCAGATGCTGG TTGGCATTGTAGCTTTTGCTTCCGCCGAATCAGCGATTTTATTTTCAAGATGAAAGCCTACAGCCATTATGATAGAGTAA AGTTCTCTCATTATTTGAATCCCGCGAGAATTCAGAGAGTAATCTGCAAAGGGGATGACTTATTTGATATGCTACCTGAG GAGTACACTTTCAAGGATATCATTGGTAAAATGGGACCAATACCCCATTCCTATTCTGCAGTTCATCTTCCTGCTTTCCT TCTAGAAAATTTCGACAAGTATAAATTTCTCTTGCCTGGAAACTGCATAAGAGAGAGATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0393600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQESSQASGMSRIRCILRGLDVKTYIFLFAVAPMCIFGIYIHGQKISYFLRPLWEKPPKPFNVIPHYYNDNVTMENLCRL HGWGVREYPRRVYDAVLFSNEIEILTLRWKELYPYINEFVLLESNSTFTGLPKPLVFNGNREQFKFVEPRLTYGTIGGRF KKGENPFVEEAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRWCDEVPQILHLQLKNYLYSFEFRLDDKSWR ASIHRYQTGKTRYAHYRQSDLLLADAGWHCSFCFRRISDFIFKMKAYSHYDRVKFSHYLNPARIQRVICKGDDLFDMLPE EYTFKDIIGKMGPIPHSYSAVHLPAFLLENFDKYKFLLPGNCIRER
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 19 19 - –
PANTHER
PTHR12224:SF4
2 366 365 3.4E-238 –
PANTHER
PTHR12224
2 366 365 3.4E-238
IPR006813
Phobius
TRANSMEMBRANE
20 41 22 - –
Pfam
PF04724
20 365 346 2.5E-180
IPR006813
TMHMM
TMhelix
21 43 23 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
42 366 325 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003830
Molecular function Beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-mannosyl-R = UDP + 4-(N-acetyl-beta-D-glucosaminyl)-beta-D-mannosyl-R.
Subterm of
GO:0006487
Biological process Protein N-linked glycosylation A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.
Subterm of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0393600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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