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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0394400 |
| Transcript ID | LotjaGi4g1v0394400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT5G48050.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q8IZF0|NALCN_HUMAN Sodium leak channel non-selective protein; TrEMBL-Plants: tr|A0A1B5Z9U6|A0A1B5Z9U6_TRISU Uncharacterized protein; Found in the gene: LotjaGi4g1v0394400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77275224..77276223) extracted from Lotus japonicus Gifu genome v1.2.
CTGCTATGGATACTTGGAACCGTATAGCTTCTCTGTTTGAGGACAATCAGAACTCTCGTGCTGTCGCTCTCGACCAGGAT TTCATCTCCACTCGCATGGAGGATTTTCCTAATGTTTCGGCCTATTGTCAACGTCTGAAACATATCTCTGATCAGTTGAG GAATGTTGGTGCCCCTGTTAGTGATCATCGTCTTGTTCTCCAGTTGGTCTCTGGTCTCACTGAGCCTTTCCGTGGTGTTG CCACCCTGATCCGTCAGAGTGAGCCTTTGCCTCCTTTCCTCAAGGTCCGCTCCATGTTGATTCTAGAGGAATCTGGTCTC GCCAGGATGTTAGGTCCGGCCTCTCAGACTGCTTTGCACACCTCTGCTTCCCGTCCACCGGCCTCCGTTGACTCCTCTCA GCAGCGCCCCACCTACCGCAGCGATCAGGGCCACTCCAACCATCGTTATGGGTCAGGGCAAAATCGCAATTATCAGGGTG GTTCTGGTAAACCTAGGAAGAAAGGTGGCTCCCGTTATCCTGGATCACCTGGCTCCTCTGGTTCCTCTGCTGCATCTCCT CCACCCTGGCGCCCACCACCGCAGGCATCCTAGAATCCATGGGGTTGGGCTCCTCCCCCTGGTTGGACTCCTTCCCCTTG GGGCATGCCTCCTTGTCCTTACCCCACATCTCAGTGGTCGCGTCCCATGGGTGTTCCGCAGCAACCCGGCGTTTTAGGTC CGCGTCCTCAGGCCTACACCGCTACTGCTTCTCCAGCACCCACTGATATCGCTGCTGCCATGCACACCATGTCCTTGACT CCTCCAGACACCACGTGGTACATGGACACTGGCGCCTCGTCCCATACTGCGGCATCTCAAGGTACTCTCACGTCTTATTC TAATTTAAGTCATTTAAATCAGAAACTGATAGTTGGTAGTGGTCAGGGCATTCCAATTCAGGGTTCAGGATACACTTCTA TTCCTACCCCTCACAAACCTTTAGCACTCAATCATGTCTT
CDS sequence (LotjaGi4g1v0394400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACTTGGAACCGTATAGCTTCTCTGTTTGAGGACAATCAGAACTCTCGTGCTGTCGCTCTCGACCAGGATTTCAT CTCCACTCGCATGGAGGATTTTCCTAATGTTTCGGCCTATTGTCAACGTCTGAAACATATCTCTGATCAGTTGAGGAATG TTGGTGCCCCTGTTAGTGATCATCGTCTTGTTCTCCAGTTGGTCTCTGGTCTCACTGAGCCTTTCCGTGGTGTTGCCACC CTGATCCGTCAGAGTGAGCCTTTGCCTCCTTTCCTCAAGGTCCGCTCCATGTTGATTCTAGAGGAATCTGGTCTCGCCAG GATGTTAGGTCCGGCCTCTCAGACTGCTTTGCACACCTCTGCTTCCCGTCCACCGGCCTCCGTTGACTCCTCTCAGCAGC GCCCCACCTACCGCAGCGATCAGGGCCACTCCAACCATCGTTATGGGTCAGGGCAAAATCGCAATTATCAGGGTGGTTCT GGTAAACCTAGGAAGAAAGGTGGCTCCCGTTATCCTGGATCACCTGGCTCCTCTGGTTCCTCTGCTGCATCTCCTCCACC CTGGCGCCCACCACCGCAGGCATCCTAG
Protein sequence (LotjaGi4g1v0394400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTWNRIASLFEDNQNSRAVALDQDFISTRMEDFPNVSAYCQRLKHISDQLRNVGAPVSDHRLVLQLVSGLTEPFRGVAT LIRQSEPLPPFLKVRSMLILEESGLARMLGPASQTALHTSASRPPASVDSSQQRPTYRSDQGHSNHRYGSGQNRNYQGGS GKPRKKGGSRYPGSPGSSGSSAASPPPWRPPPQAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 123 | 122 | 1.4E-36 | – | |
| Pfam | 2 | 103 | 102 | 3.6E-15 | – | |
| PANTHER | 2 | 123 | 122 | 1.4E-36 | – | |
| MobiDBLite | 111 | 195 | 85 | - | – | |
| MobiDBLite | 113 | 159 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0394400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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