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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0397800 |
| Transcript ID | LotjaGi4g1v0397800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 2; TAIR: AT4G39860.1 hematological/neurological-like protein; Swiss-Prot: sp|Q9SIE0|ALKB2_ARATH DNA oxidative demethylase ALKBH2; TrEMBL-Plants: tr|A0A0S3S0Z1|A0A0S3S0Z1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0397800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77544947..77548279) extracted from Lotus japonicus Gifu genome v1.2.
GTTATAATAAAGGATTAGAATTAGAATGCCAGAGCAAAAAGAGCGAGAATCATCCCATTCCACCCAAAACAGAAATCCAC AGCGGAGTTTTGCTCATTTGTGAGTTGTTGTTGTTGGGTAGCAGTTTCTATTTCATTGCATTTGAAAAAAAATTCAAAGA AAAAGATAACGTTTGTTTGTTTTTGTTTATATAGTCCCTTATTGTTGAAACACATTTTCAAATCTGGTGAATAACACGAA CACCACACCTCACATCACAAATTCACATTCACTCACACAATCAAAACGCACCATTTCCTCTCACTCCAAACTAACAAACA AACACGAATTAACAGATGATGCACAGAAACTCGCCTCGCAGAAACTCCCAAACCTGCACCTCCGATCTCCTCACATGGCC GGAACTCCCTCCGCCGGTCTCCGCCGCCTCCGTTCCCACCGCCACCACCCACCGCTCTCACCAGGTTCTTTCAATTCTTT TCATTATTTCATTTTCCGCGTTTCTGACCTCGAAATTAACATCGCTCTTCGTCGCGTTCACAGCCTTCCGATCAAATGAG CGATGTTCTCCGCCGCGACCAGCTCACCGACGAAGAAGCACAGACTCTAACTAATACGTAAAGTCTTTTCCCTTTCAATT TTCAATGTGCATTTAAATCCATTTCTGCCCCCTTTTTTTTGTGTTTTTGATGAATTTTCCTTTTCGATTGCTTATGCCTT TGATCCGATTCGTTCTTCTTTTGGTTGCGTATGTGGTTTGGCTTCACCATTTCTTGATTTGCTGTACAATGTTTTGAAAT CTTGTAAACAATTCTAATAATTCATTGCTTGCTGATATGAACATGTTAAGAAGAAGTTCATAATTGGCATCCTGTGTTCC CTTGTTGAACTTCGAATTGTGTTATGCTGAGCAATTGTCATGAAATTCTTTCTCAACATTACCTTTTTTAGGTTTAAAGC ATGACTTGATGTGAGTAATATTCATTGATTACATCTGTTGATTGTTAACCTATATATTTCTGACATAAATTGTGTCTTTT AGACTTTGTTTGGGGGGTTTTAGCGGAAGGGAAGGGAACGAATTAGGGAAGGGAAGGGAGGGAACCCGCGATTCGGAGAA GCTCAACAAAACAACTTAGGGTTGGTGTGTTTTTCAGAAATTTCCCAAATTGTTCCCCCTTTCTTAAAAAACTTCCGAAT AAGAGGAGGACTTCTCATAATCGTCTTTACCTTCCCTTCCCTTTCCCCTTGGTGTATATTAGAGTGCATGTATACTGCAG CATGAATATCTGATATGATTTTAATTTTTGTGTGCAAATCATGTATTTAGAAACTACAGCATGTTGGCTACTAGCTTAGT TCAAAGGTTCGTGTTAATTACCTAATATCGTTGTCAAACATATCCTTCTTGTATGTCGCTCAGGAAGCCTTGCTCGGAGT ATAAGATGAAAGATGTAACTGGAAGTGGTATATTTTCTACCAGTGCTGAAGATACCACACCAGAAGCCGATTCTGAAATT TCAAAAAACAAAGCAAGTATACGCGTAAATCAGGTATAAAAGATGATTACCTTGTTCCTGAGGGCAATTTGAGATTTGGT CGTATGAATGTGAGATTTCTCAAATATTAACTCTATTGTAATAACAGTTTTCTTGTTTTATTCCACGCAATTGCATCTCA GCAAGCAACGAATTATGGAAAAAGCCAGATATCATTCTACACTGAAGAAAGCGTTTCTCCTAAGAAACCAGCCTCTATAC CTGAGGTAGCAAAGCAGCGTGAGCTGAGTGGAACGTTCCATAGCGAAGAACCAGACGCAAAGACTCAGAAGCAAACAACA AGTGCCAAAACCAAGGAGCTCAGCGGAAGTGATATATTTGGCCCTCCTCCAGAAATTGTGCCTCGTTCAGTGGCTGCTGC GGGCTTTACAGACTCAAGAGATCGCATTGACATGGAAGAATATCTTCCACGAAATGTGCACACATCTGTGAGAGTTTCTA ATGTAAGTGTCTTCTGGGCATGAGAATCCATCTTGTCATCTTATTTGTCATTTACATTGAATGAATGGCTAAAGAAATTT TTATACATCCCTTCCTATGGCACCTACATGACTATTTGTAGTTTTGAATTTGACCTTTGATGGTTCACCACTGTCCTCTT ATGCTTCCCTGAAAGCCTATTTTAAATGCAGATGAATTTGTCTTATTATATGAAGATATAACCCAAGAGTTGTAATTGAA AGTGTTGGGAAATACCCTATTGGGGGATTATTAAGATGTTCTAATTTCTATCATAATAATATTTGTTCCCTCACCAAAAT GTGATCCTGTTAGAGCCGAACAGCACAGGCATTGTAATTGTATTGAACAGGTCCATCGGTTTGTCTACATGGTTTTGTAG TTTCTATATTAGGTTTCATTTTTTCTTGCACTTTGAAATTTGTTCTTTTTGTGGTTAATACAAGGGATGTGTTTCTCTTA GTTCGACTATGCTGACACTATCATTTTTCTGAAATAAGATATATATTCTTCAATTTCTTTTGGATTTGTTTGCCCCTTTA ACTAATGTGATTTTTCCTCCTCCTTATGTTCATATTTTGACCTTTTTTTTAAAGCCTGCTGGTGGCCAAAGTAGTATCGT GTTTGGTGATGAACCAGCTCAGAACACATCAAAGAAAATACATGACCAGAAGTTAACGGACCTGACGGGCAATAATATTT TCAAGGATGACGCTCCTCTAGGAACAGTGGAAAAGCTTCGGAGCAGCGCAAAACTTAGAGAAATGGCTGGGAGTGACATA TTTGGTGATGGAATAGCAGAAAACAGAGACAAAATACTAGGTGGCCGCAGACACCATGGTGGAGGGAGTGACATATTTGC TGATGGTAAGGCAGAAAACAGAGACAAGATACTAGGTGCCCGTAAACCCCCTGGTGGAGGAAGCAGCATTTCCCTGACTT GATGTTTAAATTTAAATTCGTCCCCTTTAATTTCCTTGTTCTGTAAGTTTCCTGAACTGGATTTCCCTCCTTTTGACTGG AAATGGAAGGAGCAGTGAAATGGATTATCACTTATCAGCATTGTATATTCATGGCAAAACCTCCGATGCAGTATAACTAG TTTGTGTTGCTACAATGAGTGCAAATGGTTTATTTATTTTGATATACAAAATCATAAGAAAATTGTTTTTTCTTTTCTTG GAATACTAAATTATTTGATATATTCACGTTTTGCTCTGTTTATGCTTTGTCTATTTCTTGATTGTTTCCACCAACTATAA AGATGAACAAGTAGATATAAAACTTTAGTGAGCAAGACTTATACAAACACGAG
CDS sequence (LotjaGi4g1v0397800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCACAGAAACTCGCCTCGCAGAAACTCCCAAACCTGCACCTCCGATCTCCTCACATGGCCGGAACTCCCTCCGCC GGTCTCCGCCGCCTCCGTTCCCACCGCCACCACCCACCGCTCTCACCAGCCTTCCGATCAAATGAGCGATGTTCTCCGCC GCGACCAGCTCACCGACGAAGAAGCACAGACTCTAACTAATACGAAGCCTTGCTCGGAGTATAAGATGAAAGATGTAACT GGAAGTGGTATATTTTCTACCAGTGCTGAAGATACCACACCAGAAGCCGATTCTGAAATTTCAAAAAACAAAGCAAGTAT ACGCGTAAATCAGCAAGCAACGAATTATGGAAAAAGCCAGATATCATTCTACACTGAAGAAAGCGTTTCTCCTAAGAAAC CAGCCTCTATACCTGAGGTAGCAAAGCAGCGTGAGCTGAGTGGAACGTTCCATAGCGAAGAACCAGACGCAAAGACTCAG AAGCAAACAACAAGTGCCAAAACCAAGGAGCTCAGCGGAAGTGATATATTTGGCCCTCCTCCAGAAATTGTGCCTCGTTC AGTGGCTGCTGCGGGCTTTACAGACTCAAGAGATCGCATTGACATGGAAGAATATCTTCCACGAAATGTGCACACATCTG TGAGAGTTTCTAATCCTGCTGGTGGCCAAAGTAGTATCGTGTTTGGTGATGAACCAGCTCAGAACACATCAAAGAAAATA CATGACCAGAAGTTAACGGACCTGACGGGCAATAATATTTTCAAGGATGACGCTCCTCTAGGAACAGTGGAAAAGCTTCG GAGCAGCGCAAAACTTAGAGAAATGGCTGGGAGTGACATATTTGGTGATGGAATAGCAGAAAACAGAGACAAAATACTAG GTGGCCGCAGACACCATGGTGGAGGGAGTGACATATTTGCTGATGGTAAGGCAGAAAACAGAGACAAGATACTAGGTGCC CGTAAACCCCCTGGTGGAGGAAGCAGCATTTCCCTGACTTGA
Protein sequence (LotjaGi4g1v0397800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMHRNSPRRNSQTCTSDLLTWPELPPPVSAASVPTATTHRSHQPSDQMSDVLRRDQLTDEEAQTLTNTKPCSEYKMKDVT GSGIFSTSAEDTTPEADSEISKNKASIRVNQQATNYGKSQISFYTEESVSPKKPASIPEVAKQRELSGTFHSEEPDAKTQ KQTTSAKTKELSGSDIFGPPPEIVPRSVAAAGFTDSRDRIDMEEYLPRNVHTSVRVSNPAGGQSSIVFGDEPAQNTSKKI HDQKLTDLTGNNIFKDDAPLGTVEKLRSSAKLREMAGSDIFGDGIAENRDKILGGRRHHGGGSDIFADGKAENRDKILGA RKPPGGGSSISLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| MobiDBLite | 1 | 49 | 49 | - | – | |
| PANTHER | 2 | 305 | 304 | 2.0E-126 | – | |
| PANTHER | 2 | 305 | 304 | 2.0E-126 | – | |
| Pfam | 4 | 303 | 300 | 6.9E-118 | ||
| MobiDBLite | 31 | 45 | 15 | - | – | |
| MobiDBLite | 85 | 105 | 21 | - | – | |
| MobiDBLite | 125 | 185 | 61 | - | – | |
| MobiDBLite | 146 | 160 | 15 | - | – | |
| MobiDBLite | 293 | 319 | 27 | - | – | |
| MobiDBLite | 293 | 333 | 41 | - | – | |
| Pfam | 301 | 331 | 31 | 8.8E-10 | ||
| PANTHER | 302 | 332 | 31 | 2.0E-126 | – | |
| PANTHER | 302 | 332 | 31 | 2.0E-126 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0397800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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