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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0400100 |
| Transcript ID | LotjaGi4g1v0400100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein UPSTREAM OF FLC; TAIR: AT5G10150.1 UPSTREAM OF FLC protein (DUF966); Swiss-Prot: sp|Q9LX14|UFC_ARATH Protein UPSTREAM OF FLC; TrEMBL-Plants: tr|G7LAD3|G7LAD3_MEDTR DUF966 domain protein; Found in the gene: LotjaGi4g1v0400100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77766157..77769497) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTCTTCTTTCCTCTCTTAAATGTGTACACTATACAAACAATTCATTGCGAAAAAAAAAAAAAGGAGGATATAATCTT TTGTAGATGAGTTTCTTGTCCATGGCACATTAATCACAACACATTAATTATCGAACGTCTCTCTCATTCTTGGTCCTTTT AAGTCAATTTCTCGAGTGAGCATATTTCAGAAGGACATTGGGTCCTGTTGAGAGCATTTGGGGTCCCTTCATTCATTCCT CAGACACAATAACAGGGAGGAATAGAATTTTGTGTTGTTGGAGGAGCAAGCATGGATCAGCATCAGGTTCGTCCACACAG ATGTAGTAGCAGAGACACTAGCCCAGACCGTGCCAAAATTTGCAGGAAGGTCATCAAGCCCGCCAGAAAAGTTCAAGTTG TTTACTATCTATCCCGCAATGGCCTCTTGGAGCACCCCCATTTCATGGAACTCACCCTTTTGCCTAACCAACCTCTCCGT CTAAAAGATGTGTTCGATCGACTCATGGTGCTTAGAGGAAGTGGCATGCCTCTGCAATATTCATGGTCCAGCAAAAGGTA CATTAATTTCACAAATACATGATCTTGTTTTGTTCTGTTTCCTCTGTAATCACTATGTTTCTTCTACATTCACACTTGGT GTTTATTCAATTAGAATGTCACAAATTAAGATCACAATGCCAATTTCAGGAACTATAAGAGTGGTTATGTGTGGTTCGAT TTGGCACTCAAGGATGTCATATACCCCTCAGAAGGAGGAGAATATGTTCTCAAAGGATCTGAACTAGTTGAAGGATGCTC TGGTAATTAGCCTCTTCTTTTCTCTTGAAAATCATCAATATAACAATAATAATAATAATAATTGTACAAAGAGCAAACTC AGTACTATACAGCTCTTGCTATATGCGCTAGGTCTAAGGAAGTGTCAGAGATATGATATAATCAGTCTTACCTTACATTT TTGTAAGAGATTGAAGTGACCACAATGTCACATAGCAACAACCCTTATCAATTATCATTACTAATTCCTAAAGTTAAAAA CACAGTCAAATTCTAAGTGATTGATCTTTTTTGTTTATATGTGGATTAATGCAGAGAGATTTCAACAACTTAATGTGAGT AACAAAAATGGCATTCATGAACCGCCAGAAACAAACTACGGTTACAATGCAAAGAGCAAGGTGCTGAGCAACAGGCAACA ACAGAAGGAAGCTGAAGAATACGAAGAGTACGAAGAGCAGGAAGAAGAGAAAGAGTTCACGAGCTCCACTACCACACCGC ACTCTCGTTGCTCCAGAGGTGTATCAACCGAAGAACTTGGCGAAGATGAAGACCGCCACGAAGCTCTTCAAAACAACACG AAAACAGAGAAGGTGGTTGTTACTAATAACGTTTCGTCACGTGGTAATGTAACTAATGTTCCTCCTCCGATGAAGAACCA TTCTGCTGCTGCGGCGAGTCTGGCGGAGAAGCTGAACCGGAGGGTGGTGGTACCGGTACAGAGCAAGCAGCGGTTCGGTG GCGAGTTAGGGACTGAGTCGGCGACGTCAGCGGCGCCGAGTCGATACTCTGCTCTGCTGCAGTTGATAGCGTGTGGAAGC TCGGGCCCGGAGTTCAAGGCGAGGACGCAGCAGGAACCGCGGGTGAGCAGTGTGGGGACCACTGCAAGCAAGCAGAGACA GAGCGTTGACAGGAGGGATCAGAAGGCGTTTATGATGAGCTGTGAGGAGGAGGAGGAGGAAGAGGCGGTGGCGATGATGA TGAACCGCGTGTCGGAGAATCCGAGGTTGATGTTGGGGAATTTGCAGAATGCAGAGGAGAAGGAGTACTTCAGTGGGAGC TTGGTGGAGATGGAGTCCATGAAAGCCAACCATCCAGTGCTCAAGAGATCCAACTCCTATAATGAAGAAAGGTTAGAAGG TTCTTTACTGAATGTTTCGACACACGGTGGAAAATCACAGTAAACATAATCAATTTACTTACGCTTTTGTGATTGTCTAC CGTAATTTTGACTTTTGTTTGTGTGTTTTTCCATGTATACACAAACATGAATTTAGTCTCTATCTGAATTTTTTGGATGT ATATGTGGAAATCTTTTACAGGTTATTCAGAAGTTTGAATTAATTTTGAGGAAAATTGATGTGATTATAGGATTTTGAAT TAATTTTGATAAAAGAGCTTATTAATGTATAGGAGGAGCAAGCTGGGGGTGGAGGAAGTGAAGCTGAAGAAGGAAATGGA AGAAGAGAACAGGGAAAGGAAAGGAGGAGTGAAAGAGAAATGCATCCCTATCAAGAAATCTTCCAAAGAGAGCAGCAGGA GATGGTGATGTGGATACATCTGATTCTGAGCATATGAATCTAAGTTAAGACTAGTTTATTTATTGTGGAATTTAATTTGT AATTAATACACTAGTAATTAAGGGTTGTTGTTGCCTAATGCTATGGTTAGTTAGTTTGCTTTTTCATTAGTGTAGCTGCT GTTACAAATTAAATTGAAGTGCATTTGTTTGTTGTGGCTCTAGATCATTAGCCTCACTTGGGAGTCGACAGTTGTAGAAA GAATAGACAGAGAGTCCAAGTAAAACATATTAATCACTTCAATAATTTCAACAAAACAGTTGATCTATACCTGTAAGAAT CTAATAATGAAGACCAAGAATATGTATTGTCTATACCTTATTTCATTCTAGGTGACCAATAATTTTGTTTATAAAAGTCA AAAAGTGAGTGTAATTCACAGTTGAACACACTGCTATACAATTAAATGGTATACCAGTCCTGACATAATAGCTGGAGTAG ATGTGAAATTGAATACTTTGATAACAATTCATTTTGATTTCCATTTACAAATACTGGTGTTGCCACCATCTTTCATTTAC AATAAGTATGCACAAGAATTTGAATAAATGAATGAATTAGTTGTATATACAAATGAATTTGAAGCATGGACATTTGAAGT CTTTAAACATCTGCAGATCGTCCTGAAATAACACCCTGGCATCTTGGTCATGCATATATGATATATCTTCCTTTCACTCT GCCAACTCAACAAAATGTGAGACATTTCTCTTCCCAAAGCCAAGGACTTTCTCAACGTAGAGCATTTTTTTAAATCCTTC TACCATAAGTCAGAATCAATTTTGGATAGAAGCTTTTGCATCCTGTTTTCTGAGAGCAGCTTCCATCTTATCAATTTCTT CATCACCTCAGCAGTGAATGAGAATGCTTCAATAATTGTTGTAGTGGTGGTTGCCCTTGTGCTTTACACAACAGGCCCTT CACTCTTTCTGTCACCTGTGTTTAAAGAAGTTTCATTACCAATGTTAGCAGCTGATTGATC
CDS sequence (LotjaGi4g1v0400100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAGCATCAGGTTCGTCCACACAGATGTAGTAGCAGAGACACTAGCCCAGACCGTGCCAAAATTTGCAGGAAGGT CATCAAGCCCGCCAGAAAAGTTCAAGTTGTTTACTATCTATCCCGCAATGGCCTCTTGGAGCACCCCCATTTCATGGAAC TCACCCTTTTGCCTAACCAACCTCTCCGTCTAAAAGATGTGTTCGATCGACTCATGGTGCTTAGAGGAAGTGGCATGCCT CTGCAATATTCATGGTCCAGCAAAAGGAACTATAAGAGTGGTTATGTGTGGTTCGATTTGGCACTCAAGGATGTCATATA CCCCTCAGAAGGAGGAGAATATGTTCTCAAAGGATCTGAACTAGTTGAAGGATGCTCTGAGAGATTTCAACAACTTAATG TGAGTAACAAAAATGGCATTCATGAACCGCCAGAAACAAACTACGGTTACAATGCAAAGAGCAAGGTGCTGAGCAACAGG CAACAACAGAAGGAAGCTGAAGAATACGAAGAGTACGAAGAGCAGGAAGAAGAGAAAGAGTTCACGAGCTCCACTACCAC ACCGCACTCTCGTTGCTCCAGAGGTGTATCAACCGAAGAACTTGGCGAAGATGAAGACCGCCACGAAGCTCTTCAAAACA ACACGAAAACAGAGAAGGTGGTTGTTACTAATAACGTTTCGTCACGTGGTAATGTAACTAATGTTCCTCCTCCGATGAAG AACCATTCTGCTGCTGCGGCGAGTCTGGCGGAGAAGCTGAACCGGAGGGTGGTGGTACCGGTACAGAGCAAGCAGCGGTT CGGTGGCGAGTTAGGGACTGAGTCGGCGACGTCAGCGGCGCCGAGTCGATACTCTGCTCTGCTGCAGTTGATAGCGTGTG GAAGCTCGGGCCCGGAGTTCAAGGCGAGGACGCAGCAGGAACCGCGGGTGAGCAGTGTGGGGACCACTGCAAGCAAGCAG AGACAGAGCGTTGACAGGAGGGATCAGAAGGCGTTTATGATGAGCTGTGAGGAGGAGGAGGAGGAAGAGGCGGTGGCGAT GATGATGAACCGCGTGTCGGAGAATCCGAGGTTGATGTTGGGGAATTTGCAGAATGCAGAGGAGAAGGAGTACTTCAGTG GGAGCTTGGTGGAGATGGAGTCCATGAAAGCCAACCATCCAGTGCTCAAGAGATCCAACTCCTATAATGAAGAAAGGAGG AGCAAGCTGGGGGTGGAGGAAGTGAAGCTGAAGAAGGAAATGGAAGAAGAGAACAGGGAAAGGAAAGGAGGAGTGAAAGA GAAATGCATCCCTATCAAGAAATCTTCCAAAGAGAGCAGCAGGAGATGGTGA
Protein sequence (LotjaGi4g1v0400100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQHQVRPHRCSSRDTSPDRAKICRKVIKPARKVQVVYYLSRNGLLEHPHFMELTLLPNQPLRLKDVFDRLMVLRGSGMP LQYSWSSKRNYKSGYVWFDLALKDVIYPSEGGEYVLKGSELVEGCSERFQQLNVSNKNGIHEPPETNYGYNAKSKVLSNR QQQKEAEEYEEYEEQEEEKEFTSSTTTPHSRCSRGVSTEELGEDEDRHEALQNNTKTEKVVVTNNVSSRGNVTNVPPPMK NHSAAAASLAEKLNRRVVVPVQSKQRFGGELGTESATSAAPSRYSALLQLIACGSSGPEFKARTQQEPRVSSVGTTASKQ RQSVDRRDQKAFMMSCEEEEEEEAVAMMMNRVSENPRLMLGNLQNAEEKEYFSGSLVEMESMKANHPVLKRSNSYNEERR SKLGVEEVKLKKEMEEENRERKGGVKEKCIPIKKSSKESSRRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 442 | 442 | 1.5E-73 | ||
| PANTHER | 6 | 439 | 434 | 1.5E-124 | – | |
| PANTHER | 6 | 439 | 434 | 1.5E-124 | ||
| Pfam | 34 | 400 | 367 | 3.0E-76 | ||
| MobiDBLite | 136 | 210 | 75 | - | – | |
| Coils | 155 | 179 | 25 | - | – | |
| MobiDBLite | 196 | 210 | 15 | - | – | |
| MobiDBLite | 299 | 320 | 22 | - | – | |
| MobiDBLite | 299 | 328 | 30 | - | – | |
| Coils | 400 | 420 | 21 | - | – | |
| MobiDBLite | 413 | 443 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0400100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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