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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0400200 |
| Transcript ID | LotjaGi4g1v0400200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Exonuclease, DNA polymerase III, epsilon subunit family; TAIR: AT4G39810.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|F4JJ23|NEN4_ARATH Protein NEN4; TrEMBL-Plants: tr|G7LAD2|G7LAD2_MEDTR Ribonuclease H superfamily polynucleotidyl transferase; Found in the gene: LotjaGi4g1v0400200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77767136..77771484) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAGAAGGAAGGGAATCTTAATTATCCATGTCAAAATATGCTAAGTAGCTCTTCCCCTTCATGCCAACCTTTGTAA TTAACCTTGACACAAAAGCATTGGGTTTCTTTCTACATGTGCTTTTCTGTTCCAAAGGATCACGTACCTTTCCAAACATC ATCTATAAATAGTTAACTCATGAAACCATGTTGAATACAAAGGAAACAAAACAAACCAAAAAGAAATTGAAGAAGTATAG TGATGATGGAGTTCTCTAATTCATGCAATGAGCAACAACAAGCACCTGAGATTGTGTTCTTTGATTTGGAAACCACAGTG CCAAGAAAAGTTGGACAAAGGTTCTGTGTCCTGGAATTTGGTGCAATGGTTGTTGATCCTCACAAACTCAGCGAGATTGA GAGCTTCACCACATTGATAAGGCCAAAGGATCTTACTGTGGTGTCAGTGAAATCTAGCAGATTGGAGGGGATAACACGTG AAGCTGTGAAAAATGCACCATCTTTTGAGGATGTTGCAGACAGGATTTTCAGCATCTTGAATGGGAGGGTGTGGGCAGGG CATAACATTCAAAGATTTGATTGTGTCAGGATCAGAGAAGCATTTGATGCTATCAATAGGCCCCCACCAGTGCCTGTTGG AATGATTGATTCTTTGGGGGTCTTAACTGAGAAATTTGGAAGAAGAGCTGGTAATATGAAGGTATGTTAATTGTTAACAA ATGCAGCAAAAACTGATTAGTTCATCACAATTTCAAGTCCTTTGAGTTTAACCAGTATTGTACAGCAGCAAAATCTAATT AGTTCCTCACGATTTCAAGTTCTTTGAGTTTAACCAGTATTGTACTTATGCACAGATGGCAACATTGGCTTCTTATTTTG GCCTGGGGCAACAAAAGCACAGGTATGCTAAGCATTACTAATAGCATATTTGGATCGGCTTCTCTTCCCTCATAATTGAT TCTGATATCTAGAAGCTCACTGAAGGCAAAAGCTTCTCGTAATTGATTTTAGCTTTAGAATCATTTGTAGAAAGATTTTC AAACATGCACTAAGGGCGCCTTTGGATCATCGTTGTCACAATTGATTTTGAATAAAATTCATGTTTGGATACATGGTGGA AAACCACGGTAAAGTCAAAATCATGGTGGACAACAACAATATCTAAGGGTAATTGCTTTTGTTCTCCATGATTTTGGCTC ACAGTGATTTTCTACTGTGTATTCAATTTTCCAAACATGAATTTCATTATTGATTTTGTTACACATAAGCTACTCTCTCT AGCCTCAAGCAAACATGATTTTGGCATTGAACTACTCTAAAATGACTCTCATACATTAATATTAATTGTAACCCAAATTG ATTTTACTCTAAGGTTTCCTAAGGGAGAACCAAACACATTTAAGTCTAGTGTTTATGATGGTGACATGATAATGTGCTTT CAGTTTATTAATTGCTTCAAAATTTGAATGATTTTGAAGCAGAAGCCTAGATGATGTTCGCATGAACTTGGAGGTCCTGA AGAACTGTGCAACAGTGTTGTTTCTGGTGTGCAATTTACCTTCATATTTTATTCTGATTGCTTAAATTTGAGTGCAAAGA TTCCAACGACATGCATGATTCTCACACGCTTATTGTGGCTTTTGTGTAAATCAGGAATCTAGTCTACCAAACACATTGCA TAGCAAGTGGCACGGCTCTTCCAGTGTTATGACAAGGAGCAGAACCAATGGGAAATCACCCTGCAAAGAAGAGACTAGCA GAAAATCTCCCCCAACTTCATTAGCATTTCAAAGAACAGTCCCCTATACTAGGGGAAGTTTGACAAAGGTTAATTTAATG TTTGTTTTTCAAGTATAAGCATGTTAATTAGCATATTCATCTTAATTTGTTTGAATTAACTCACATAAGCTTATTTCCGG TATTAATTTTGGCTTTAAAATCAATAAAAAGGATTTCCAAACATATATATTATTATTAAGTGGTGTAGATCAATCAGCTG CTAACATTGGTAATGAAACTTCTTTAAACACAGGTGACAGAAAGAGTGAAGGGCCTGTTGTGTAAAGCACAAGGGCAACC ACCACTACAACAATTATTGAAGCATTCTCATTCACTGCTGAGGTGATGAAGAAATTGATAAGATGGAAGCTGCTCTCAGA AAACAGGATGCAAAAGCTTCTATCCAAAATTGATTCTGACTTATGGTAGAAGGATTTAAAAAAATGCTCTACGTTGAGAA AGTCCTTGGCTTTGGGAAGAGAAATGTCTCACATTTTGTTGAGTTGGCAGAGTGAAAGGAAGATATATCATATATGCATG ACCAAGATGCCAGGGTGTTATTTCAGGACGATCTGCAGATGTTTAAAGACTTCAAATGTCCATGCTTCAAATTCATTTGT ATATACAACTAATTCATTCATTTATTCAAATTCTTGTGCATACTTATTGTAAATGAAAGATGGTGGCAACACCAGTATTT GTAAATGGAAATCAAAATGAATTGTTATCAAAGTATTCAATTTCACATCTACTCCAGCTATTATGTCAGGACTGGTATAC CATTTAATTGTATAGCAGTGTGTTCAACTGTGAATTACACTCACTTTTTGACTTTTATAAACAAAATTATTGGTCACCTA GAATGAAATAAGGTATAGACAATACATATTCTTGGTCTTCATTATTAGATTCTTACAGGTATAGATCAACTGTTTTGTTG AAATTATTGAAGTGATTAATATGTTTTACTTGGACTCTCTGTCTATTCTTTCTACAACTGTCGACTCCCAAGTGAGGCTA ATGATCTAGAGCCACAACAAACAAATGCACTTCAATTTAATTTGTAACAGCAGCTACACTAATGAAAAAGCAAACTAACT AACCATAGCATTAGGCAACAACAACCCTTAATTACTAGTGTATTAATTACAAATTAAATTCCACAATAAATAAACTAGTC TTAACTTAGATTCATATGCTCAGAATCAGATGTATCCACATCACCATCTCCTGCTGCTCTCTTTGGAAGATTTCTTGATA GGGATGCATTTCTCTTTCACTCCTCCTTTCCTTTCCCTGTTCTCTTCTTCCATTTCCTTCTTCAGCTTCACTTCCTCCAC CCCCAGCTTGCTCCTCCTATACATTAATAAGCTCTTTTATCAAAATTAATTCAAAATCCTATAATCACATCAATTTTCCT CAAAATTAATTCAAACTTCTGAATAACCTGTAAAAGATTTCCACATATACATCCAAAAAATTCAGATAGAGACTAAATTC ATGTTTGTGTATACATGGAAAAACACACAAACAAAAGTCAAAATTACGGTAGACAATCACAAAAGCGTAAGTAAATTGAT TATGTTTACTGTGATTTTCCACCGTGTGTCGAAACATTCAGTAAAGAACCTTCTAACCTTTCTTCATTATAGGAGTTGGA TCTCTTGAGCACTGGATGGTTGGCTTTCATGGACTCCATCTCCACCAAGCTCCCACTGAAGTACTCCTTCTCCTCTGCAT TCTGCAAATTCCCCAACATCAACCTCGGATTCTCCGACACGCGGTTCATCATCATCGCCACCGCCTCTTCCTCCTCCTCC TCCTCACAGCTCATCATAAACGCCTTCTGATCCCTCCTGTCAACGCTCTGTCTCTGCTTGCTTGCAGTGGTCCCCACACT GCTCACCCGCGGTTCCTGCTGCGTCCTCGCCTTGAACTCCGGGCCCGAGCTTCCACACGCTATCAACTGCAGCAGAGCAG AGTATCGACTCGGCGCCGCTGACGTCGCCGACTCAGTCCCTAACTCGCCACCGAACCGCTGCTTGCTCTGTACCGGTACC ACCACCCTCCGGTTCAGCTTCTCCGCCAGACTCGCCGCAGCAGCAGAATGGTTCTTCATCGGAGGAGGAACATTAGTTAC ATTACCACGTGACGAAACGTTATTAGTAACAACCACCTTCTCTGTTTTCGTGTTGTTTTGAAGAGCTTCGTGGCGGTCTT CATCTTCGCCAAGTTCTTCGGTTGATACACCTCTGGAGCAACGAGAGTGCGGTGTGGTAGTGGAGCTCGTGAACTCTTTC TCTTCTTCCTGCTCTTCGTACTCTTCGTATTCTTCAGCTTCCTTCTGTTGTTGCCTGTTGCTCAGCACCTTGCTCTTTGC ATTGTAACCGTAGTTTGTTTCTGGCGGTTCATGAATGCCATTTTTGTTACTCACATTAAGTTGTTGAAATCTCTCTGCAT TAATCCACATATAAACAAAAAAGATCAATCACTTAGAATTTGACTGTGTTTTTAACTTTAGGAATTAGTAATGATAATTG ATAAGGGTTGTTGCTATGTGACATTGTGG
CDS sequence (LotjaGi4g1v0400200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAGTTCTCTAATTCATGCAATGAGCAACAACAAGCACCTGAGATTGTGTTCTTTGATTTGGAAACCACAGTGCC AAGAAAAGTTGGACAAAGGTTCTGTGTCCTGGAATTTGGTGCAATGGTTGTTGATCCTCACAAACTCAGCGAGATTGAGA GCTTCACCACATTGATAAGGCCAAAGGATCTTACTGTGGTGTCAGTGAAATCTAGCAGATTGGAGGGGATAACACGTGAA GCTGTGAAAAATGCACCATCTTTTGAGGATGTTGCAGACAGGATTTTCAGCATCTTGAATGGGAGGGTGTGGGCAGGGCA TAACATTCAAAGATTTGATTGTGTCAGGATCAGAGAAGCATTTGATGCTATCAATAGGCCCCCACCAGTGCCTGTTGGAA TGATTGATTCTTTGGGGGTCTTAACTGAGAAATTTGGAAGAAGAGCTGGTAATATGAAGATGGCAACATTGGCTTCTTAT TTTGGCCTGGGGCAACAAAAGCACAGAAGCCTAGATGATGTTCGCATGAACTTGGAGGTCCTGAAGAACTGTGCAACAGT GTTGTTTCTGGAATCTAGTCTACCAAACACATTGCATAGCAAGTGGCACGGCTCTTCCAGTGTTATGACAAGGAGCAGAA CCAATGGGAAATCACCCTGCAAAGAAGAGACTAGCAGAAAATCTCCCCCAACTTCATTAGCATTTCAAAGAACAGTCCCC TATACTAGGGGAAGTTTGACAAAGGTGACAGAAAGAGTGAAGGGCCTGTTGTGTAAAGCACAAGGGCAACCACCACTACA ACAATTATTGAAGCATTCTCATTCACTGCTGAGGTGA
Protein sequence (LotjaGi4g1v0400200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEFSNSCNEQQQAPEIVFFDLETTVPRKVGQRFCVLEFGAMVVDPHKLSEIESFTTLIRPKDLTVVSVKSSRLEGITRE AVKNAPSFEDVADRIFSILNGRVWAGHNIQRFDCVRIREAFDAINRPPPVPVGMIDSLGVLTEKFGRRAGNMKMATLASY FGLGQQKHRSLDDVRMNLEVLKNCATVLFLESSLPNTLHSKWHGSSSVMTRSRTNGKSPCKEETSRKSPPTSLAFQRTVP YTRGSLTKVTERVKGLLCKAQGQPPLQQLLKHSHSLLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 9 | 187 | 179 | 9.1E-33 | ||
| PANTHER | 10 | 275 | 266 | 3.9E-130 | – | |
| PANTHER | 10 | 275 | 266 | 3.9E-130 | – | |
| SUPERFAMILY | 15 | 186 | 172 | 2.36E-30 | ||
| SMART | 16 | 190 | 175 | 7.0E-30 | ||
| CDD | 18 | 182 | 165 | 6.16022E-30 | – | |
| Pfam | 18 | 181 | 164 | 4.3E-28 | ||
| MobiDBLite | 202 | 232 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0400200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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