Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0400700 |
Transcript ID | LotjaGi4g1v0400700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Fasciclin-like arabinogalactan protein; TAIR: AT5G06920.1 FASCICLIN-like arabinogalactan protein 21 precursor; Swiss-Prot: sp|Q9FL53|FLA21_ARATH Fasciclin-like arabinogalactan protein 21; TrEMBL-Plants: tr|G7LAE6|G7LAE6_MEDTR Fasciclin-like arabinogalactan protein; Found in the gene: LotjaGi4g1v0400700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77815380..77816714) extracted from Lotus japonicus Gifu genome v1.2.
GTTTCCGCAATGGAAAATTTCTCAGTTCGATTCGCTTTGTTCTGCACCGTCTTCTTCGCCGCCGTGCTCTGCTGCCCCAA GGTCACCGCCACTGAAGGAATGGAAGCTGCTTTCGCTCATTCAACGCCACCGCCTCCTCCGCACGATCTTCAAGAACACT CGTTCTTCTCCCACACTGCGCTTCTTCCTCCGATCTTGTCACATCTCGGTTTCCACGACCTTGCGACGGCGGCGCCGTCG CTCTCTGACGCTGCTGCAACTGTAACTGCAGCTTCCTCTGCCTGGAATGGTCCTTCCACTATCTTCGCTCCGTCGGATTC CTCGCTCCGGACTTGCTTTTCTTGCTCCGTGCCTAATCTCCTCCGCGAGCACATCGTTCCAGGTCTCTTCCCCATCGATT ATCTGAGGAAACTTTCTTTTGGCACCAAGATCGAGACCTTGAGTCCGGGACGATGCATCACCGTTACCGCCGAATCGGTC AATCACAACACCAGCGCCGCCGTCGCTCCGAAGGTCTTCATCGGAGGCGTGGAGATCACGCAGCCGGATCTGTTCAACAA CGGCATGGTCGTGGTTCATGGCCTTCAAGGCTTCGTTTCTCCGCTGTCTCCGTTCTCTTGCGATGTCGAGAGGATGACCT CGCTCTCCTTCCCGTACCATCCAGATCACCGTTCCGGTCATCATCTCCACCACACTCACGGCGCTCCTCCGATGCAGCCT ACATTCATGCGTCTCATGCTCAAAGACGCCATGCTCAGGCTCCGTAACAACGGATTCAGCATCCTCGCACTCGCGATGAA GGTCAAGTACGCAGAGCTCGTGACTCTCAGCAACATGACGGTGTTCGCCGTCGACGATCTTTCCATCTTCTCCGGTTCAC ACTCGTACATCAGCAATGTCAGGTTCCACATCGTGCCGAACCGTTACTTGACGATTGCAGATCTGGAGAAGCTTCATGTA GGGACTGCTCTGCCGACATTGGAAAGAGGCCAACCGCTGCTCATCACAACCTCCGGCGGAGGAGCTACGTCGGCGCCGAT GAGGATTAACTATGTGAGGGTGAAGGTGCCGGATGTCATGCGCAACATCAAGATTGTGGTGCACAGCGTGTACTTGCCGT TTCCGCACATTAATCCCGTGGCAGCGGCTTATGATACTTTCTTAGGCGCCGGTGGAGGAGCAGCGGCGGAAGGAATGGCT GATGATATTCCAGATTCTGTTGGTCAGGCGATGGAAGGGGCCTGCGCTGGTTGTGGCGGCGTCGCTGCTGCTGCTGTATC ACCCATGCCTCAGGTGAAACCAATGGTGGAGATTGAAGACCACCATGGCCTGTGA
CDS sequence (LotjaGi4g1v0400700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATTTCTCAGTTCGATTCGCTTTGTTCTGCACCGTCTTCTTCGCCGCCGTGCTCTGCTGCCCCAAGGTCACCGC CACTGAAGGAATGGAAGCTGCTTTCGCTCATTCAACGCCACCGCCTCCTCCGCACGATCTTCAAGAACACTCGTTCTTCT CCCACACTGCGCTTCTTCCTCCGATCTTGTCACATCTCGGTTTCCACGACCTTGCGACGGCGGCGCCGTCGCTCTCTGAC GCTGCTGCAACTGTAACTGCAGCTTCCTCTGCCTGGAATGGTCCTTCCACTATCTTCGCTCCGTCGGATTCCTCGCTCCG GACTTGCTTTTCTTGCTCCGTGCCTAATCTCCTCCGCGAGCACATCGTTCCAGGTCTCTTCCCCATCGATTATCTGAGGA AACTTTCTTTTGGCACCAAGATCGAGACCTTGAGTCCGGGACGATGCATCACCGTTACCGCCGAATCGGTCAATCACAAC ACCAGCGCCGCCGTCGCTCCGAAGGTCTTCATCGGAGGCGTGGAGATCACGCAGCCGGATCTGTTCAACAACGGCATGGT CGTGGTTCATGGCCTTCAAGGCTTCGTTTCTCCGCTGTCTCCGTTCTCTTGCGATGTCGAGAGGATGACCTCGCTCTCCT TCCCGTACCATCCAGATCACCGTTCCGGTCATCATCTCCACCACACTCACGGCGCTCCTCCGATGCAGCCTACATTCATG CGTCTCATGCTCAAAGACGCCATGCTCAGGCTCCGTAACAACGGATTCAGCATCCTCGCACTCGCGATGAAGGTCAAGTA CGCAGAGCTCGTGACTCTCAGCAACATGACGGTGTTCGCCGTCGACGATCTTTCCATCTTCTCCGGTTCACACTCGTACA TCAGCAATGTCAGGTTCCACATCGTGCCGAACCGTTACTTGACGATTGCAGATCTGGAGAAGCTTCATGTAGGGACTGCT CTGCCGACATTGGAAAGAGGCCAACCGCTGCTCATCACAACCTCCGGCGGAGGAGCTACGTCGGCGCCGATGAGGATTAA CTATGTGAGGGTGAAGGTGCCGGATGTCATGCGCAACATCAAGATTGTGGTGCACAGCGTGTACTTGCCGTTTCCGCACA TTAATCCCGTGGCAGCGGCTTATGATACTTTCTTAGGCGCCGGTGGAGGAGCAGCGGCGGAAGGAATGGCTGATGATATT CCAGATTCTGTTGGTCAGGCGATGGAAGGGGCCTGCGCTGGTTGTGGCGGCGTCGCTGCTGCTGCTGTATCACCCATGCC TCAGGTGAAACCAATGGTGGAGATTGAAGACCACCATGGCCTGTGA
Protein sequence (LotjaGi4g1v0400700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENFSVRFALFCTVFFAAVLCCPKVTATEGMEAAFAHSTPPPPPHDLQEHSFFSHTALLPPILSHLGFHDLATAAPSLSD AAATVTAASSAWNGPSTIFAPSDSSLRTCFSCSVPNLLREHIVPGLFPIDYLRKLSFGTKIETLSPGRCITVTAESVNHN TSAAVAPKVFIGGVEITQPDLFNNGMVVVHGLQGFVSPLSPFSCDVERMTSLSFPYHPDHRSGHHLHHTHGAPPMQPTFM RLMLKDAMLRLRNNGFSILALAMKVKYAELVTLSNMTVFAVDDLSIFSGSHSYISNVRFHIVPNRYLTIADLEKLHVGTA LPTLERGQPLLITTSGGGATSAPMRINYVRVKVPDVMRNIKIVVHSVYLPFPHINPVAAAYDTFLGAGGGAAAEGMADDI PDSVGQAMEGACAGCGGVAAAAVSPMPQVKPMVEIEDHHGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 27 | 27 | - | – | |
SignalP_GRAM_NEGATIVE | 1 | 27 | 27 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
Phobius | 1 | 7 | 7 | - | – | |
Phobius | 1 | 27 | 27 | - | – | |
Phobius | 8 | 22 | 15 | - | – | |
PANTHER | 18 | 377 | 360 | 1.3E-161 | – | |
PANTHER | 18 | 377 | 360 | 1.3E-161 | – | |
Phobius | 23 | 27 | 5 | - | – | |
Phobius | 28 | 441 | 414 | - | – | |
ProSiteProfiles | 55 | 195 | 141 | 8.798 | ||
SUPERFAMILY | 63 | 198 | 136 | 4.05E-8 | ||
SMART | 97 | 199 | 103 | 8.8E-4 | ||
SUPERFAMILY | 228 | 366 | 139 | 1.0E-6 | ||
SMART | 277 | 373 | 97 | 0.16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0400700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…