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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0404700 |
| Transcript ID | LotjaGi4g1v0404700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G39410.1 WRKY DNA-binding protein 13; Swiss-Prot: sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13; TrEMBL-Plants: tr|I1KTB9|I1KTB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0404700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78135862..78138839) extracted from Lotus japonicus Gifu genome v1.2.
CAAGGACACATTTAAATTAGATTTTCAAAGAAAGATAGAGAAGGGCAAAGCGAAAAAGGGAAAGTTAGATTTGCAAAGTT ATAAGTTTATGCTTTCCATTATGGTGTAATCTCCTCAGAGAAACACCTTTTTTATAATTTGCACCAAAGCTCTTGCTCTA GAAGGACCATCAACTTCTATATAGATAGGTGTGAGGGTGGAAGAGAGGGAGAAGAAGAGAAGAAGGAAGAGAGAAAGCTA GAGAAAGATATCTTAAGAAAGTTATGTCAACAACTTCCCCAGCTATTATTAACCACAGCTTATGCGAGGACCAGAATGAG ATAATGCCTGCACAAATGGGTTTTGTTCCTTTCCCAATAACAAACATGTCCTTCCCTCCTTTGGATTGCAATCAATCTTT GAAGGCCTTCAGTTCCATAGCTTCTTCACTTGCATCTGAAGGAGACTCTACATCAAATCTAACAGTAGAAACCCTACTTG CAACCACTGCTCTAAAATCAAGATCAGAACATCAATACCTCACTTCTAGCTTTGGAGGACCTCAATTCCTATCCTTGCAC AGATCAAGTGTGAATCCATGGTTAGACAACCCTAACTTAGTTCTCATATTCAACCACACACATCAACCTTTAATTTCTTA TTGTTTAATCAGTAACGACACTAGATATACAAACTGTGCAAACGCTGAACAGACTTCCCATTTTTCTTTCTATCTTTTTC TTCTTATATAACACATCCATCAATATCGTATATCACATTCTTTAGTTTTCTTCTCTTCCTTTCTCACTCTATATGTTTGT ATGTCTGCACAAATCATTTTATATTGCCATTGGGTCATATGATTTTATATGTACTCTTTGGCTAATTAAATATAATTATG GGGTCATGGGCGTGTTTTAATGTATGTATATAGGGCATTGGGAGAAGTAACTAATGATTGCTTCAGCAATAAAAGAAGTG GAGTAGATGATCATCATCTAAGGATTTCTGCCATGAAGATGAAGAAAATCAAGGGAAGAAGGAAAGTGAGAGAGCCTAGG TTTTGCTTCAAGACCTTGAGCGAGGTGGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTATGGACAGAAAGTGGTGAA GAACACACAACACCCCAGGTATAATATTTTTTCAAAGTTTAATTTGATCTTAATTTCTTTCTTTGCTTTGCTTTAATTTA ATAGTTGAATGAATATTAATCAAAACCTTTTAACATATATTCTCTCTCCAATCTCCCCCCTCATAATTGGTTTTTCATCT TATGATTATATATATCTGGTTTTTGGATGATTTTAATTTTTCTGAGTAATGTGGGGATTCAGGCTGCAATAATTAAAGAT ATTGAAGCAGGTTTTCACTTTATGTCAAGTTCTAAAATATGCATATATAAGAAGAATTTTGTTCATTTGCCAATGTTTGA AGAACTAATAATTATGACCCTCACTTGTTAAAGTATTATGTAAACATAGAACTTTGTCCTCACACGAACCAGGCAGCAGT ACACAGATTATATTTTTAATTTGCTAGCTAGGTTGGTCTCTGCCAACACTTTTCCTCACAAACCCCTTTATAGCATTTTC ATGATGAGTGGTATTGATATATAGTTTTTACTTTTTATATTGCAATGGTAACTTGTTCTGATTTTGTAGCATCTAAGATT TATTTCATAATTATCATTGCTACTATACAAGGATCACGCTCAGAACATTTAATTAGAGACACTCTCATACTATATATCAT AAAGTAACTATCCAAAAACTTGATTGTTTTTGTTTTTGTCAAAGTTTAACTTGTTATGTTATGTGAGAAGAGACATGGAT ATATAACTTTTGTAGTATTAAATAAGTTTTTAGTACATGTAATATATATCCATTTTTGCCATTTTGACATCAAAATCACT CCCTCATTATGTGCAATAATGATCAAGAAAGTGCATGCTCAGTGAACATTTGGGTTCGAGCTTCGAAACACACAACAATT ATCGACATTACTATAAATGAAAATGATTTGTACACATTTTGCATAGAACAGATCTCAAACAGGCATGCAGAGTGAGAGAA AAATGAGTTGTTTGTTACATGTTTGCACAATTTGTATATCTAAGTATAATTACTTATCCAAAATTCTCTAATAGTATATA TGTTTTGTGTATGGCTTGTAGGAGCTACTACCGTTGCACACAAGACAATTGTCGTGTAAAAAAACGTGTAGAGCGCTTAG CAGAGGATCCAAGGATGGTGATAACAACATATGAAGGGAGACACGCACATTCTCCATCAAATGATCTTGAAGACTCTCAA TCTCCATCTGAATTTACCAATTTCTTATGGTAGTACGTGGACACCAACATAATATATATTTACATAAATGTATATGTCTG ATCCAAAATGGTGTGCTTTGTAGAGATGAAAATGGAATTAATTAATAATAAAAATAATCAATAGAGGAAGGTGTGTGAAG ATTGACAATGTATATATACATGTGCTCTTCTCCATTCACTCCTCCAATTTTCATCACTTCCAAGCACACCATAAGACTGT GTTTTCAATTTCTGTGGCTGTCGGTGTGGCAATATCTTGGTGCAACCAAATTTCTAGTTTAATACCATGCATTTAGTCTT TGTACGTGTGTCTCATTATAAACTAGCTAATAATACAATTTGTAAGTTGCCCTAATTTTCTACTGGGCTTCTGCTTTAAT TTGTAACTTTTCTTACATATTTCAGTTCCCCTATTCCGTTTCTCTCGGATAGTTTGTTATGCTCATACTTTTTTCACCTA TCTCATATTCAATACCCGTTCGGAAAGGTGTATAGCCGAGCCTACATCAAGTTAATGTCATTTTAGAGTCAAAAGTTTGT ATTAGCTTAGTGTATATTCGAGTCAAAATTTTGTATTAGCTGAGGGTGGTTGAAATGCCTCTTGTCCTCTCCTTATTAAT ATTACTTTGACTTACCAA
CDS sequence (LotjaGi4g1v0404700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACAACTTCCCCAGCTATTATTAACCACAGCTTATGCGAGGACCAGAATGAGATAATGCCTGCACAAATGGGTTT TGTTCCTTTCCCAATAACAAACATGTCCTTCCCTCCTTTGGATTGCAATCAATCTTTGAAGGCCTTCAGTTCCATAGCTT CTTCACTTGCATCTGAAGGAGACTCTACATCAAATCTAACAGTAGAAACCCTACTTGCAACCACTGCTCTAAAATCAAGA TCAGAACATCAATACCTCACTTCTAGCTTTGGAGGACCTCAATTCCTATCCTTGCACAGATCAAGTGTGAATCCATGGGC ATTGGGAGAAGTAACTAATGATTGCTTCAGCAATAAAAGAAGTGGAGTAGATGATCATCATCTAAGGATTTCTGCCATGA AGATGAAGAAAATCAAGGGAAGAAGGAAAGTGAGAGAGCCTAGGTTTTGCTTCAAGACCTTGAGCGAGGTGGATGTGTTG GATGATGGCTACAAGTGGAGGAAGTATGGACAGAAAGTGGTGAAGAACACACAACACCCCAGGAGCTACTACCGTTGCAC ACAAGACAATTGTCGTGTAAAAAAACGTGTAGAGCGCTTAGCAGAGGATCCAAGGATGGTGATAACAACATATGAAGGGA GACACGCACATTCTCCATCAAATGATCTTGAAGACTCTCAATCTCCATCTGAATTTACCAATTTCTTATGGTAG
Protein sequence (LotjaGi4g1v0404700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTTSPAIINHSLCEDQNEIMPAQMGFVPFPITNMSFPPLDCNQSLKAFSSIASSLASEGDSTSNLTVETLLATTALKSR SEHQYLTSSFGGPQFLSLHRSSVNPWALGEVTNDCFSNKRSGVDDHHLRISAMKMKKIKGRRKVREPRFCFKTLSEVDVL DDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNDLEDSQSPSEFTNFLW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 45 | 224 | 180 | 7.7E-73 | – | |
| PANTHER | 45 | 224 | 180 | 7.7E-73 | – | |
| Gene3D | 136 | 220 | 85 | 1.7E-31 | ||
| SUPERFAMILY | 153 | 219 | 67 | 7.98E-29 | ||
| ProSiteProfiles | 155 | 220 | 66 | 29.574 | ||
| SMART | 160 | 219 | 60 | 4.0E-37 | ||
| Pfam | 161 | 217 | 57 | 3.0E-25 | ||
| MobiDBLite | 211 | 237 | 27 | - | – | |
| MobiDBLite | 222 | 237 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0404700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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