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LotjaGi4g1v0405600.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0405600
Transcript ID	LotjaGi4g1v0405600.1
Lotus japonicus genome version	Gifu v1.2
Description	Root meristem growth factor 9; TAIR: AT5G64770.1 root meristem growth factor; Swiss-Prot: sp\|Q9FGF6\|RGF9_ARATH Root meristem growth factor 9; TrEMBL-Plants: tr\|C6T1Q6\|C6T1Q6_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0405600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:78201544..78202941) extracted from Lotus japonicus Gifu genome v1.2.

AGTTATCTTGTTTAAGCCTTTCCACAAAAGCGCTTACCCTTCTTTTCAAGCCAGACAGTAGCAGACAATGATGTTGACCC TCGTAGACTCTTTAATCTCTTGTTGAAACTACCACTATGACATGGCTTATATGCATAGGAGCTTCAAAACTTTGTCTATA TAAAGGGTCCAAAATGAATGTTTTTAGTATATTCAGATCAAGGTTAAGTATTAAGATGGTTGTTGCACAAAACAAACGTG TTCTGCTTGTGCTTTTCTTCCTCCTCTGCTTCATCTCTATCCAAGCTAGAGGTATTAATTTTGTGCTTCAATTATATAGA TTATATAGTCATATGATATTCAATTCTTTTTTTGTTGTTGAATGCTATGTATTAATTAATTTCTTTTTACATGTTTTCCA TGTGCAGCACGAGCACTGAAAGAAAAAAGCAACATAGCTAGCTCTAAGGATGATAGAACAGCTCATCATAAGGAAGAGCA AGATCACATGTTTAAGCCAAAAAAAGGTGAAGACAATGTGGATAATGAAGTGTTCTCAATGGATTACACTCCAGCTAGAA GGAAGCCACCGATTCATAATTGAATTATTTGCAATTTTGCTCTATATTCTATGCTAGGAAGTAGGAACACTGTATATGCA TTAGTCTTGCAAATTTATAACATTGTAATTACACAAAGGACAAAGTAATAAAATCACCCTAAGTCTTTCTTTCCTACACA AAATACAAGGGTTGATGGAAAATGAAAAAAATAAGTCAGTATAATAGAATAATAACAGGTCCTAGTTGTTCAGAATATTC AAAATAAGAAGGAATGAAACAGAGTATGGTGCAGTATATTTTATCTCTTTTCATCAAATAGGTCACTTTTTCTTTCCTTC TACTTTGAATCCTTGATAGATATGAAATAGATCCAACTTTTTTCTTCATTTCATTGTAAAATGTCGATTTTATTTATTTA TTTCATTTCCATGATAGAGTGCAAGTTTAAACCTCCACTAATCCTCTCTAAGATAAAGTAAATGTAAGTACTTTTTAACT GAGACAATCTCTCACCCTAAATTTTATATAACAAAAAAATTAAACTCATTTCTCCCCTCATGTGCTCGTACTAAGCAACA CATCCTTCTTAATGATATATATTTACTTACAACTTATTGAATAGCATTCTAGTAATAAAGTGACTTTTTAAATAATTCAA GTTGTGTACACATATCACAGGATTGGTCCTAAAATACATCAGCTCTGAATAGTTATAGATTCCATGTTTTACTTGTACTG ATTCCTTGTAATGTCTGGGTTAGGAACCCTTGTACCTAGTAATATTAATTTGTTTGGTTGATAAAAAAAATAACAATATT TATATACACTTTTTTTCTCTCTATCTTTTTAAATCACA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0405600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACATGGCTTATATGCATAGGAGCTTCAAAACTTTGTCTATATAAAGGGTCCAAAATGAATGTTTTTAGTATATTCAG ATCAAGGTTAAGTATTAAGATGGTTGTTGCACAAAACAAACGTGTTCTGCTTGTGCTTTTCTTCCTCCTCTGCTTCATCT CTATCCAAGCTAGAGCACGAGCACTGAAAGAAAAAAGCAACATAGCTAGCTCTAAGGATGATAGAACAGCTCATCATAAG GAAGAGCAAGATCACATGTTTAAGCCAAAAAAAGGTGAAGACAATGTGGATAATGAAGTGTTCTCAATGGATTACACTCC AGCTAGAAGGAAGCCACCGATTCATAATTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0405600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTWLICIGASKLCLYKGSKMNVFSIFRSRLSIKMVVAQNKRVLLVLFFLLCFISIQARARALKEKSNIASSKDDRTAHHK EEQDHMFKPKKGEDNVDNEVFSMDYTPARRKPPIHN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	SIGNAL_PEPTIDE_N_REGION View details on SIGNAL_PEPTIDE_N_REGION Search for proteins/transripts with this domain	1	41	41	-	–
Phobius	SIGNAL_PEPTIDE View details on SIGNAL_PEPTIDE Search for proteins/transripts with this domain	1	61	61	-	–
PANTHER	PTHR33743 View details on PTHR33743 Search for proteins/transripts with this domain View external data on PTHR33743	34	116	83	1.3E-33	IPR039337 Show description in modal box View details on IPR039337 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR33743:SF13 View details on PTHR33743:SF13 Search for proteins/transripts with this domain View external data on PTHR33743:SF13	34	116	83	1.3E-33	–
Phobius	SIGNAL_PEPTIDE_H_REGION View details on SIGNAL_PEPTIDE_H_REGION Search for proteins/transripts with this domain	42	53	12	-	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	42	59	18	-	–
Phobius	SIGNAL_PEPTIDE_C_REGION View details on SIGNAL_PEPTIDE_C_REGION Search for proteins/transripts with this domain	54	61	8	-	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	62	116	55	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	64	116	53	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	65	98	34	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0008083 View details of GO:0008083 AmiGO InterPro QuickGO	Molecular function	Growth factor activity	The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.	Subterm of View details of GO:0048018

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0405600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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