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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0408400 |
| Transcript ID | LotjaGi4g1v0408400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF506 family protein; TAIR: AT2G38820.2 DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506); Swiss-Prot: sp|Q0IZQ3|PHT45_ORYSJ Probable anion transporter 5, chloroplastic; TrEMBL-Plants: tr|I3T1K6|I3T1K6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0408400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78440093..78442188) extracted from Lotus japonicus Gifu genome v1.2.
CCCCATCCATTACATCTCACCACACAGCTGTTTTATCAACCGCCATAACTCAGTATATATATCTATATAATCAACACAAA ACTCTCTAGAATTTCAGAATTTGAACTAACTATTACTCTGTTCTTTTCTTAAACCAGAAAAGAAAAGAAACAGAAATGGG AAGTTTAGAGGATGATGAGTTGGGGCAAATGGTACAAGACTTTATAGAATCTGAGTCAACATCCCCTACAAGTTCCACTT CCTCAAATTGCCATGTTTTGCACCATCAAACCAGATATTTTATTCTGCAGGTACACTTTAGAATACTCAAAGAGCTAATA AATGATTATTTGGAAATTCTTCTGTTATTGATTCTAAATTAAATTTAGTTTCTGGAGAAAAGGTTATATGAGTGGTTTTT GCATTCCATAATTGATTTGATTCTGGAAAAACATATACTTATCCAAATTAAACATGCTATATATATATATATATATATAT ATATATATATAATGACTAGGTTTCTTTTTTTTTTTGGATTTCTTCTTGGTTTAAGATTGTCTTGGCATGCTTGTGTTTTG TATTTTGTTTTCTCATGTGTTTGTTATGGGTTTCAGGACACTCTCAGGTATGAGACAGCAGGAGAAGCTAAGGTTAAGAA GAATGTCTTGAAACATATGAGAGGCAGAAGACAGGGTTCTGAGAAAACAACAAGTCTGAGTAAATGGCTTGTTATGAGGA TGAAAATGGATGGCATCAATGTTTCTTTGTGCCACACATCTTGGTCCACCTCATTGGGATGTCCTGCTGGTGGGTGGTTC TTTCTCAAGTCTCAACTTTTTTGTCACCCCAAAATGGAATTCATATTTACCAAAATAGCTGTTTTAGACTTTTAGCTCCA TTTTTTTTTTGATACAATCTTGTCCAAGTCCAGAAATGATTCTGCCTTTAAATCAATTGGAGTATTCTTGCTTTAGAATC AATTGATTCTGTGATTAGCTTTTAGCTTTCAGAATTGGTTCTCAAGGAGAAATTGATCCAAAAGGCTAGTAGTAGTTTTT GAGTGCCATAATCAATTTTAGAAAAAGATAAGTCGATCCAAGATTGTGTCTCATTTCTCTGCACCACCAATAAAATTCAT TAACAAATATACCCAAATAGCCTTTCTTTTCTCCATTTTTCTTCGGCAAAAGCTAGTCCAATTCCATTTGAATCATGTGT TTGACAAATTAATGCTAAGGAGTGATCAAAATTTAACTCATATCATCCTTAACTAGTTGCTATAAAGTGAAATTTTGGAT TTTAATTTCTTATTTAACTTTATGGTCTGCATAACAGGTGAATATGAATTTATTGAAGTCATAACTGAAGACAAGAATCA TGCTGGTCTAGTGAGGCTCTTAGTAGATATAGACTTCAGGTCCCAATTTGAGCTTGCAAGGCCTACACAGCACTATAAAG AATTGACAGACTCACTCCCAGTTATCTTTGTGGGGACTGAGAACAAACTCTGCAAGATAATCTCTTTCCTTTGTTCTGCT GCCAAACAGTCCCTAAGAGAGAAGGGTCTCCATGTGCCTCCATGGAGAACCACTGCATACATGCAATCAAAATGGCTCTC TGGTCAAGTTGGTGATGGCAGGGAGAACTATGTTGGAGCAAAAGCTAGTGAAATTGGTGTTGGAAGTGATGATGATGATG GTATTGCCAATTGGGTACCTCCAATACTGAAGCCTAAACAAAGGGATTTGGGTGGTGGAGGGTCTGGTTTGTCTAGCCAA TTATCTAACATGAGCATAAATTGTTGCTAGCCACCCATTTGGATTGGCTTCTCTCTCCTGAATCAATTTTGAAACCCAGA AGTTAATCAGTGATAGAAGAGTTTTCAAATAAGCACCTACCCAATTTTGGTCATATTTATTTTGGATTTTTTTTTATTGT TGAGCTCCATCATGAGTGATTGATCATCACAAATATTTTTGTATTGCCAATGTATGCTTAGTGCAATCAAATAATCAATA CCTATTGTAGGTACTTATTTAGAATTTTAAGTATTTTGTGAAGGAACAGTGGCTGTTATCATCTGCATGATTGAAAAGAT GAATATTCTTCTCTAA
CDS sequence (LotjaGi4g1v0408400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGTTTAGAGGATGATGAGTTGGGGCAAATGGTACAAGACTTTATAGAATCTGAGTCAACATCCCCTACAAGTTC CACTTCCTCAAATTGCCATGTTTTGCACCATCAAACCAGATATTTTATTCTGCAGGACACTCTCAGGTATGAGACAGCAG GAGAAGCTAAGGTTAAGAAGAATGTCTTGAAACATATGAGAGGCAGAAGACAGGGTTCTGAGAAAACAACAAGTCTGAGT AAATGGCTTGTTATGAGGATGAAAATGGATGGCATCAATGTTTCTTTGTGCCACACATCTTGGTCCACCTCATTGGGATG TCCTGCTGGTGAATATGAATTTATTGAAGTCATAACTGAAGACAAGAATCATGCTGGTCTAGTGAGGCTCTTAGTAGATA TAGACTTCAGGTCCCAATTTGAGCTTGCAAGGCCTACACAGCACTATAAAGAATTGACAGACTCACTCCCAGTTATCTTT GTGGGGACTGAGAACAAACTCTGCAAGATAATCTCTTTCCTTTGTTCTGCTGCCAAACAGTCCCTAAGAGAGAAGGGTCT CCATGTGCCTCCATGGAGAACCACTGCATACATGCAATCAAAATGGCTCTCTGGTCAAGTTGGTGATGGCAGGGAGAACT ATGTTGGAGCAAAAGCTAGTGAAATTGGTGTTGGAAGTGATGATGATGATGGTATTGCCAATTGGGTACCTCCAATACTG AAGCCTAAACAAAGGGATTTGGGTGGTGGAGGGTCTGGTTTGTCTAGCCAATTATCTAACATGAGCATAAATTGTTGCTA G
Protein sequence (LotjaGi4g1v0408400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSLEDDELGQMVQDFIESESTSPTSSTSSNCHVLHHQTRYFILQDTLRYETAGEAKVKKNVLKHMRGRRQGSEKTTSLS KWLVMRMKMDGINVSLCHTSWSTSLGCPAGEYEFIEVITEDKNHAGLVRLLVDIDFRSQFELARPTQHYKELTDSLPVIF VGTENKLCKIISFLCSAAKQSLREKGLHVPPWRTTAYMQSKWLSGQVGDGRENYVGAKASEIGVGSDDDDGIANWVPPIL KPKQRDLGGGGSGLSSQLSNMSINCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 2.1E-124 | – | |
| PANTHER | 1 | 266 | 266 | 2.1E-124 | ||
| Pfam | 36 | 204 | 169 | 5.9E-52 | ||
| TIGRFAM | 85 | 204 | 120 | 6.2E-46 | ||
| MobiDBLite | 246 | 266 | 21 | - | – | |
| MobiDBLite | 250 | 266 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0408400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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