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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0408700 |
| Transcript ID | LotjaGi4g1v0408700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9LXD8|HEC3_ARATH Transcription factor HEC3; TrEMBL-Plants: tr|C0JP17|C0JP17_LOTJA Putative basic helix-loop-helix protein BHLH12; Found in the gene: LotjaGi4g1v0408700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78494879..78496570) extracted from Lotus japonicus Gifu genome v1.2.
CACTCCCCTTTCAGTAAAAACTCGTTACCAAAGACTTTGCCCTCTCTTTCTCTTCCTTGGGCCCCCTCTAGCTATTCCCC TCCTCTAGTCATCACCTTTTGAACAATCAAAGTTATTCATCAAAATGATAAAAACAGCTTCTTCAAGCCACTTAACCTAA GAAAGAAAACCCTTCTTCACCACATCAATTAACCACACAGCTGGCGTATATATATCCTCTAATTACTTGATAAGGTAGAT ATATATGTAGTTAAATTACTCATAATTATTGGTGTTTCATTTCAATTGATCAAATTGAAAACCCTCTTTCTCTCCCTTCT CTTATATTTTTCAGCAAATTTTTGTTAAGTCATGGATACAAACCAAAACAACAACACTACTAGTGCATTCACAAGTTTGA ATAGCACTTGGAATCTGGAGAAGATGGATCAAGACCCTATAATTCTCCAACTCCACCAACAAAACCACCAAATCCCTTCA GGGGTTTGGCCCTACCACCACCTTCTTCACATGCCATCTTCATCAAACACCATCACACCCTCCTCATCAGGTTCTCTCAG TGATATCTTAGGAGTCCACAGCATAGAAGAAGGAGAAGAAGAACAAGAAGAAGAAGAGTTAGGAGCAATGAAGGAGATGA TGTACAAGATCGCTGCTATGCAGCCGGTGGACATCGACCCCGCCACCATCCGGAGGCCGAAGAGGAGAAACGTCCGCATC AGCGATGATCCGGCAAGTGTGGCGGCGAGGCATCGGAGAGAGAGGATCAGTGAGAAGATACGGATCCTCCAGAGACTCGT CCCTGGAGGAACCAAGATGGACACGGCGTCCATGCTCGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCA GGTTGCTTCAGTCCACCACTCCTCAACACCACCCTCCTCCACAACCACCACAATGTGTTGGAATTGGAAGTACTACAGGT GCTCCTCTTCTACCTCCTAGCACCTTGTTATTAGCCCCTTCTTTTGATTGGCCCTTTGCACCAAATTTATTACTCAGTTC CACTGCCACTACTGTGGTCGCCACCAACATGCCGGCCCGACTAGGAATTGAAGCCGTTGGCCACGGTCATGCTTGTGATG CCTCTTCCAGCTTTAATCATCATGAGGTAATCAGTGAATAATTAGTGGATGATAATTAGGTCATGATAATTAATTGCTTA ATGTACGTATATGAAACCTAGGAGTACTGCTTGATGATATCAGTATGTAGATTATTGTCTCAATGCCAAAAAAAATAGAG AAGAAAAAAAAAAAAGGAATGATCAAGAAGATGCAGGTAGAGTAGGTGTGTGTTTGGTTTCACAATTAGCACAAAATTAC ATAGAAGCTGAGATTTGTAGCTTCTGATGACTAGAAGTGATTTTAGAGCATTTCATGTAACCGAACTTGGCATAAATGTT TTAGGGAAGTGTGATATATGTGTGAGGGAAAAGGTCTGTTAGGATATTGTTGACTAATGGTTCTGAAGAATAATCATAAC GGTTGGCTTGGTTACGTAGCTAGAGAGGCATATATATATTATAATAATATATACTCTAGATAGTTTCAGAAAATGTGTGT GTGTATGTATGTAGTTTGGATATCATGTTGGCCGGAAAGTTTGTTTGGCCATGATATGTTTCCAGGAATAAATTCAACTG TGACGTGAGAAG
CDS sequence (LotjaGi4g1v0408700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACAAACCAAAACAACAACACTACTAGTGCATTCACAAGTTTGAATAGCACTTGGAATCTGGAGAAGATGGATCA AGACCCTATAATTCTCCAACTCCACCAACAAAACCACCAAATCCCTTCAGGGGTTTGGCCCTACCACCACCTTCTTCACA TGCCATCTTCATCAAACACCATCACACCCTCCTCATCAGGTTCTCTCAGTGATATCTTAGGAGTCCACAGCATAGAAGAA GGAGAAGAAGAACAAGAAGAAGAAGAGTTAGGAGCAATGAAGGAGATGATGTACAAGATCGCTGCTATGCAGCCGGTGGA CATCGACCCCGCCACCATCCGGAGGCCGAAGAGGAGAAACGTCCGCATCAGCGATGATCCGGCAAGTGTGGCGGCGAGGC ATCGGAGAGAGAGGATCAGTGAGAAGATACGGATCCTCCAGAGACTCGTCCCTGGAGGAACCAAGATGGACACGGCGTCC ATGCTCGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAGTCCACCACTCCTCAACACCA CCCTCCTCCACAACCACCACAATGTGTTGGAATTGGAAGTACTACAGGTGCTCCTCTTCTACCTCCTAGCACCTTGTTAT TAGCCCCTTCTTTTGATTGGCCCTTTGCACCAAATTTATTACTCAGTTCCACTGCCACTACTGTGGTCGCCACCAACATG CCGGCCCGACTAGGAATTGAAGCCGTTGGCCACGGTCATGCTTGTGATGCCTCTTCCAGCTTTAATCATCATGAGGTAAT CAGTGAATAA
Protein sequence (LotjaGi4g1v0408700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTNQNNNTTSAFTSLNSTWNLEKMDQDPIILQLHQQNHQIPSGVWPYHHLLHMPSSSNTITPSSSGSLSDILGVHSIEE GEEEQEEEELGAMKEMMYKIAAMQPVDIDPATIRRPKRRNVRISDDPASVAARHRRERISEKIRILQRLVPGGTKMDTAS MLDEAIRYVKFLKRQIRLLQSTTPQHHPPPQPPQCVGIGSTTGAPLLPPSTLLLAPSFDWPFAPNLLLSSTATTVVATNM PARLGIEAVGHGHACDASSSFNHHEVISE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 204 | 192 | 3.0E-82 | – | |
| PANTHER | 13 | 204 | 192 | 3.0E-82 | – | |
| ProSiteProfiles | 123 | 172 | 50 | 15.116 | ||
| CDD | 127 | 177 | 51 | 3.72241E-11 | ||
| Gene3D | 128 | 183 | 56 | 7.8E-11 | ||
| SUPERFAMILY | 128 | 191 | 64 | 1.44E-14 | ||
| SMART | 129 | 178 | 50 | 1.3E-12 | ||
| Pfam | 132 | 172 | 41 | 4.9E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0408700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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