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LotjaGi4g1v0409300.1

Overview

Field Value
Gene ID LotjaGi4g1v0409300
Transcript ID LotjaGi4g1v0409300.1
Lotus japonicus genome version Gifu v1.2
Description NAC domain protein,; TAIR: AT5G09330.1 NAC domain containing protein 82; Swiss-Prot: sp|Q9FY82|NAC82_ARATH NAC domain-containing protein 82; TrEMBL-Plants: tr|A0A151TLE2|A0A151TLE2_CAJCA NAC domain-containing protein 78; Found in the gene: LotjaGi4g1v0409300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:78542206..78546222) extracted from Lotus japonicus Gifu genome v1.2.

AAACTTATAAATTTTTTACAATTTTATTTTATTGTTTAGGCCCAATTTTCTTTTACGCGTTCCCCTAAACCCTGATATAA ACCCTTCTCTTCACTTCAATCCTTCTTCGCGTAATCATCTTCTATGCTAGAGTGAGAAAGAGAGAGTGTGGTTTCCTCGT TCGTTTCTTCAATCTCCGATCTAGGGTTTCTCCACCGCGCCGATGTCTGTTTACCTCACCAAAATTCAATCCTCCTTCAT CGTTGGCTGCCGCACCTGCTTCATGAACCGCGGAAGAAGGCTTTGGTGTCCCTCCAAAATCTTGTTCCGGCACGTCACTT GATACTCCCCTCTCACTCCGGTTTCATTTCTCTCTCTCTTTTCCCCCCTCTCTCTTTCTGATCGCAGTTCTTGAATTTCT GTTTCCATTTCGTTTCATTCGAAGTAATAATCGTTTTCATTGAGATTGAGAAAAGGCAAAATTGTACTGTGTTTGTTTGA TTGTTCGATTGCTTGTTTTCCCGAAAATGAAATTGGTTCCGGGGTTTCGGTTTCATCCCATGGATGTTGAGTTAGTGAAA TTCTATCTGAAGAGGAAAGTCATGGGGAGAAAGCTCCCTCATGATGTTATTGCTGAAGTTAATGTCTACAAGCATGCTCC CTGGGATCTTCCTGGTAATCTAGATAAGTTTATTTGAGTACTGTGTGATTGTGATTGTGTGTGTTTCTATTTTTTGATTT TGTTACTAATTAGGGTTTTTTTTGTTTCCTTTGTTTAGATAAGTCTTGTTTGAGAACTGGGGATTTGGAATGGTATTTCT TCTCCCCGACGGAGAAGAAATATGGCAGTGGGGCCAGGATGAATCGGGCTACGGAGATTGGGTTTTGGAAAGTTACTGGG AAGGATAGAGCTGTTCTACATAATAATCAAGTTGTGGGCATGAGAAAAACCCTGATATTTCACACGGGGAAAGCACCTCG TGGGGATAGAACAAATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACTTAGCTGACAAAGGAATTGCTCAGGTAT CCATTTGTTTCTTATAATGATATATGTATCATTTAGTTTTGAACTGCCGTCTGTATGAAAATTTGTAGGACATGTGCTTT TGATTGCGAATGTAGTAAAGGATAGGATGTCTATTACTCTAGCTGCTGTTTTAATCTATTTCTCTGTAAATGGTAATATA TGAATGTTTAATGCATGTTGATGTGGCTTTTATTATGCAACCACTTGCTTTATTGCTATGAATCAAATAAGAATTCTGGT GTTTATTGTTTTTCCTTACACCCATAAAGAGAATTGTTGTTTGTATGTGACTATTGCATGTTTGGTTCTGCAGTGGACTC CGTCAAAACAGGGATTTGCAGCTCTCAAAACAGGATTTTGTTTATTTTCCATGTTGTTTGGTTCTACTTTGCATTCTTAC TTTTAAGTCTAACCTGATTTTATATTTAAATTGGGATTTGGGCAAAAGCAAGATTTGTTATTTTTGCTAGAGTTTTCAAG TTAGTTTTTACTCATCAATGTTTTGACTTCTTATCCCTTTACATATCTGATAATTTTTTATTAAAACAGTATAAAAATGA TACCCTTTAAGTAATTATTCTGTTATTCATCTTAAAGGGTTTTAATCAGAACTATCCAGAAAACACTACTCTTATGAATT TTATTCACCCCTGATTTCTAACAAAATAATTTTACAAAATCAAGATGATCCTAATTAGTTTTTGAATGCCCTTTTAACCT TCTTCATATCAACTATTGAATTTTTTATTAATGTTTTGTGTGGATTTTATTTTAATTTTACGTACTTCTCATGGTGTGTT TGATGGCAGGATTCCTATGTGATCTGTAAGGTATTCCAAAAGGAAGGTCCTGGACCCAGGAATGGTGCACAATATGGGAG ACCATTTAATGAGGAAGACTGGAATGATGAAGAAATTGGAATACCTTATGTTGATTCATCTGCACCAATTCCCATTTCGT CTATAACATCTAATACTTCTGTTCCAAATGACCAATATCTCCTTGCTGGTGGATGTACTGGGTCAACATCCACATCATGT CTAACGGGAATGATGCCTTCTCCTGGCCTGGAAATTCCTTCACCTCCAAGCAACCAAGCTGTTAACAGTGATGAAGATAT TTTATCAATGCTTGACATTTTCAAAGAAGACACATTGCCTGAGGTTTGCTTCCTATTTCTTTTTCTTCGTCCTGCCTATA CTTTCTTCTGGAAAATGCTGTGACGTTTGTTTTTCTATCTTTGTAATGTTTATGTGTTCCCGAATTTTTTTAATTCTATG CCTTTATCTACCCCTGCGGTTTGCACCTTTTCATAAATTATAACGCCATTTTACTACATGATTGTGATCACGTATGTTTG AGTTTGCATTACGAATTTTGGCTAATACTAGACGTCTTGATAGTTGAGAAGTTAATAGATTCATATGTTACTCGATATGC TGTGCATCAGGCAATGGCTTGCTTCCTTTTCTATCTTTTCTACTTTCTCATGTTTTGTTTTTTTGTTGTATTTTGTTATA TACTTCTTTCAAAATGGGTTGGAGCTTGATGTATAACTTCAAGGGTATAAGGGGCCTTTTGTTAAATGGTATTGTTCTCT TTGTAGCTCCTCTTTGCTATTTCGGGTTAAGTCTGGTGCTTAGTTCATGGAAGAAATATACGCATAAGTTTAGTAGGATT CAAGGAGAGCAATCCTCTCATGCCATTTTAACATGCCCATGTCATGTAAAAGATCTGAACTATCTGTTTTTGTTCAATAG TGTAGAATTAAAATGATCATTCACAACCAAGCTACACTGTCATCAATCGCAAGCCGCCACTGCCAGCATTATTGCCCAAA CCAGTCTCTGCATCTCTATAAACTCGTAATCCCACACCATCTCATTTCCATAACCGTGGTAGTGTTCTTCATTAGACAGG AAGTTGGGGCAATTTCTTTAGTAGAGAATATAGTAAAGTCTCATTTTAGAGGGTTTGTGGACATATGGAGAAGACCCATA GAAACACTGAAAAGGAGATCTGGTCGTATGAAGAATAGTCCTCTAGTTTAAAAAAACCAATGATATGATGTTGTTTTATC TGTGTGGAAAGACTATTTATCTTATAACATGTTTGTTGCAATACTCTTATTTATGTATTAGGATACTTTTCACTAACGAG AGATTGATAATCTTGTTCAGGAAAATATTACTGAAGGTGCACCTTCAATTGACTTTTTCGAGGACCTGGGAAACCTGGAT TCCTGGGATGCTGCTGGTTTCTCCTCTGTCCAGAATGTTGAGTGTGGCACAAATGGAATGGCCACTACAGGTGATGTTTC AGGGTTTGGTGACTTGGACTTCTTGGAGTTGATTGATCTGGACTCTCCCTTGTTCTGGCAGACTACACTACCTGAAAATT GGAGTCCAGATAAATAGACTGTTACTTTTGGGGTCTTTGACCAAGATATTTTTACAGCCACATCATTCAGCATGAGGCTA CTCATTGTTGGTAATCTTGTTTGGTGATTTGACTCGGTCAAAGTAAAGAATCATTGGTTGAATTGGTGAGCCATTTATAT TATGTAATAAATGCTACAGTAGCATCATGATAACTAGTGACTCTGTGGTTTAGGTCTTTACTCTCAAGACCAAGGATCTA TCATAATACACTTGGAGATTTGTTTGCCAGCACCTTTCCCTTTATAACTTTATCTTGACATTATTAGTCTTTTAAAAAGT GTAGCTTTCATAGAGTTAAGAGAGCATTTTGTTTTCTCTATTACGATCTTCATCTGTAATATCTCTCCCATTTTTTGTCA TATCACACATAATGTCTCACTTATCTATCTTCTATTTCTATCAAACTCTAGGTGTGAAGTGAAATTCAAGTTTCAAAGTA TTATTTTCCATACTAAATAGTACCACTTGAGGAGCTTGAGCTTTTTCTATTGCTTGATTTGCTTCCCATGGGCTCATTGC TTGGGCCCGGATAGAGA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0409300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAATTGGTTCCGGGGTTTCGGTTTCATCCCATGGATGTTGAGTTAGTGAAATTCTATCTGAAGAGGAAAGTCATGGG GAGAAAGCTCCCTCATGATGTTATTGCTGAAGTTAATGTCTACAAGCATGCTCCCTGGGATCTTCCTGATAAGTCTTGTT TGAGAACTGGGGATTTGGAATGGTATTTCTTCTCCCCGACGGAGAAGAAATATGGCAGTGGGGCCAGGATGAATCGGGCT ACGGAGATTGGGTTTTGGAAAGTTACTGGGAAGGATAGAGCTGTTCTACATAATAATCAAGTTGTGGGCATGAGAAAAAC CCTGATATTTCACACGGGGAAAGCACCTCGTGGGGATAGAACAAATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGG ACTTAGCTGACAAAGGAATTGCTCAGGATTCCTATGTGATCTGTAAGGTATTCCAAAAGGAAGGTCCTGGACCCAGGAAT GGTGCACAATATGGGAGACCATTTAATGAGGAAGACTGGAATGATGAAGAAATTGGAATACCTTATGTTGATTCATCTGC ACCAATTCCCATTTCGTCTATAACATCTAATACTTCTGTTCCAAATGACCAATATCTCCTTGCTGGTGGATGTACTGGGT CAACATCCACATCATGTCTAACGGGAATGATGCCTTCTCCTGGCCTGGAAATTCCTTCACCTCCAAGCAACCAAGCTGTT AACAGTGATGAAGATATTTTATCAATGCTTGACATTTTCAAAGAAGACACATTGCCTGAGGAAAATATTACTGAAGGTGC ACCTTCAATTGACTTTTTCGAGGACCTGGGAAACCTGGATTCCTGGGATGCTGCTGGTTTCTCCTCTGTCCAGAATGTTG AGTGTGGCACAAATGGAATGGCCACTACAGGTGATGTTTCAGGGTTTGGTGACTTGGACTTCTTGGAGTTGATTGATCTG GACTCTCCCTTGTTCTGGCAGACTACACTACCTGAAAATTGGAGTCCAGATAAATAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0409300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKLVPGFRFHPMDVELVKFYLKRKVMGRKLPHDVIAEVNVYKHAPWDLPDKSCLRTGDLEWYFFSPTEKKYGSGARMNRA TEIGFWKVTGKDRAVLHNNQVVGMRKTLIFHTGKAPRGDRTNWVMHEYRLEDKDLADKGIAQDSYVICKVFQKEGPGPRN GAQYGRPFNEEDWNDEEIGIPYVDSSAPIPISSITSNTSVPNDQYLLAGGCTGSTSTSCLTGMMPSPGLEIPSPPSNQAV NSDEDILSMLDIFKEDTLPEENITEGAPSIDFFEDLGNLDSWDAAGFSSVQNVECGTNGMATTGDVSGFGDLDFLELIDL DSPLFWQTTLPENWSPDK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31989:SF252
2 180 179 1.1E-120 –
PANTHER
PTHR31989
2 180 179 1.1E-120 –
SUPERFAMILY
SSF101941
2 153 152 7.59E-59
IPR036093
ProSiteProfiles
PS51005
3 153 151 55.516
IPR003441
Pfam
PF02365
5 130 126 3.5E-35
IPR003441
Gene3D
G3DSA:3.30.310.150
12 156 145 1.1E-54
IPR036093
PANTHER
PTHR31989:SF252
237 331 95 1.1E-120 –
PANTHER
PTHR31989
237 331 95 1.1E-120 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0409300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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