Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0411600.1

Overview

Field Value
Gene ID LotjaGi4g1v0411600
Transcript ID LotjaGi4g1v0411600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Vacuolar protein sorting-associated protein 20; TAIR: AT5G09260.1 vacuolar protein sorting-associated protein 20.2; Swiss-Prot: sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2; TrEMBL-Plants: tr|A0A0L9UEE2|A0A0L9UEE2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0411600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:78760627..78764442) extracted from Lotus japonicus Gifu genome v1.2.

ATTGAGAACATGACGAAAAATCGGTTAAAGTGGTATGATACGTCCAAAAGAATACTTTTGGAAGCACCAATGATCAAATG TTAGATTACCTTCTAAAAAAGGATTAAAATCAAATTTATTGAAGAAAAATATCCGATCTTTGTGCCCAACGTTTGGTCTG GTAACATTCAACGAAGATTCAAATCAAAGCTGAAAGAGATTTCATTGGGGCTGGTTGGGAATCCATGAATTTGTTGTGGA TTCCTGTATGATCATCAGGGATAGCGAAACCCTAATTTCAATCATCCAAGTTTGATGGGGAATATTTTTGTCAAGAAGCC AAAGGTAACAGATGTGGATCGTGCAATTCTCGCTCTCAAGACCCAGAGACGCAAACTCGCTCAATATCAGCAAAAGGTTC AACCTTTATTTTCCAATTTACATTTACAATTTAGGTAAAGCATATCTCAATTTTCCAGTTGGGTTCTTTCAGATTATCTT GACCAAATGTGTTGTTCTAGCTGGAGCTTGAAATAGAATCAATCTTTATCTAATTTCTAAGTTTGATACTTTGCAATTGA GTCCTTTTTGTATTTTGTTGCAGCAAATGGATTGTAATATGTAATTGAAAGTAATACTAATAGTGATTCATGAAGATTTT TTATATTTATAAATGGTTAATGTGAATTTGCTGCTCACTTGCCTGTTTATTATAATTGACTCTGGAGCTGGTCAGATTGA TGTGTTTTTCCTAAGTTCTTGGCGTTCGAATTGGTGAAATTAAGAATTAGTAGTTTAGGATTTATTTGAGATTTGAAGTT ATCAACTATGATGAGCAACTATTATTGAGGGTATAATTAATGAAAAATATGGACTACTTGGACTTAATTATGTTGCTGAA ATTTCATATCAGGAGATGATTTTGGGTTTAGGGCATAGTGGTAGATATGATGACTAGCTAGTATTGTTGATTAAGCTATG AAGAAAAGGGCAAGGGGCTCTTGGAATCACTTGAGAGAGTATCAGACATGGCTTGAATGGATATGCCCTTAACATGCACC AGTTTTTAAAATACTATTTAGCACCCCAAGCAAATATACCATAGAAATGCAAGCATTGCACACAGTTTTAACCCCCTCAT TTCTACCAAGGCCTCTGAAATTACTGACAAGAAATACCCTGAACTAGGGACAAATTCCAATCAATTTTCAAGATAAAAGG TGCTTCTAGGAAATGTAAGAACAAATTAGTTGTTGTGGCTTCTAGGCTAGACCAATACACAACACTTACTAAGATAGTGT GCTATAAACTGTCAACAAACCTGCTGAATATCATTGGCATGTTGTGTACATTAATATGTGTAAATGCACAGTTTAACAAT TTCAATCAAAATGGTGTATTAGGACGTGATGGGAGATGCATGTGTGGATTAGAAGTATTCAGTAACTTGCATAAAATTGG CTTGTAAAAAGTTCTATAGTATGCTAATAAGTTTGATGGCTTAGTCATTGGAATCAGACTTTATCTTTTGATCTCCTGTA GGTGAAATAATTAATGACTTCCAATTAATCAAGTTCAGGATCTTTTTTGATATGTCATAACTGTCAGGTCAATGTCAATA GAAATTTTGTACAAAAGTATAATGCTTTTCTGCATTGGATAATTTACCCTATTTCTTTGTTGTGATCCTCTTTTTCAAGC TTGATGCTGTCATTGAAGCAGAAAAGCAAGCTGCAAGAGACTTGATTCGTGAAAAGAAGAAGGACAGGGCATTGTTAGCA TTAAAGAAAAAGAAGGCACAAGAAGAATTGCTGAAGCAAGTTGATGCCTGGCTTTTAAATGTGGAACAACAAGTAATATT TTAATATTCAATATATATTCTCTCTATGGCCCCAATTCAGCCAAAGTGATGGCATGTTATAACTTATAAAGAGTCTCAGG GACTTATTGGTTGCCACTGTGGATCTTGTCTCTAAATGACTTCTTGACACGATCGTACATGTAAAACAAATATGTGGACT CATTCGTTTTGGTTTAGTTAGCAGATATTGAATTGACAAGCAAGCAGAAGGCTGTGTTTGATAGTTTGAAGGCTGGTAAT GATGCAATGAAAGCCATACAGAGTGAGATAAACATTGAGGATGTTCAGAAACTTATGGATGATACTGCTGAAGCTAAAGC TTATCAAGATGTGAGTTTAACTTCATTCTTATCCTTACTCCTACTTCTTTGTGGAAACTGATTTCCATGTCTAGAGTCAT TGCACTGGAGTTGTACTTGTTTGATGCAGCTTTATGAGATGTTTGGTTATTCATATTGCTGCTACGTTCTTTTTTAATAT CCATCTCTCGGTTTCTTTCTGTTTGTATTTGATGTTTCCTGATGGATACCATAATTTTGTTGAATTTGAAGGAAATCAAT GCAGTACTAGGGGAGCAGCTATCAGCAGAAGACGAGGAGGAGATTTTAGCAGAATTTGAGAATTTGGAAACTGAGGTATT ATTTGGAATTTTTTTAAAGAAAAATTGTCTCTTCTCCCTTTCTGTATCTCTTGGCTGGAGAACAGCTTATTTATCAAACA AGGTTTATGGAATGTTCTTTTGTAGGTCGAATCTGTGTTGGTTTTATTATATGGTGAATTAATTTCTAAGATTAATCTTG GCTTATACTGATGAAGCAACATTCCTACTGCATTTAGCTGCACAATGTAAACAGCTGCCAGTTGAAACATATAGAAGTCA AGCTGTGTTTATTCCTCTTAGCAGAATTTTGAGCCACTTATTCATTGCATGGGAGATTTACTCAAAATTTGGTAGAAAGG AAATAATCACATAAAACAATTTCAGCTAAAAAACTTATATAGATCAATAATTTTTAGTCAAGGTAGGATTTACTATGGAG TATAGGTACTCAAATTATTATATATCTATGGTTCTGATGAGGACCACAATAGAACTGAATCTATCTTCAAGGTGTTTTTA CACATTAGATAATGATTTTGTGCCCCTTTGAGATGATGTGCTAGACCATGTCTTAAATTTCTCTTAATGATTAAACAAAG AGGCATGCCATGAATGTGCAATAATAGATGGAGATCATGCATCTAGAAGATGTTATTGTATGATGACTGGTTCTTGTTTT CAGCTTACTGTCCAGGATCTTCCTGAAGTTCCTACTTCAGTGTCTGAAGATATCAACGAGAAATTAGACCTTCCTGAAGT CCCAATCCAAGCACCAGGTGAAAAAGTTGTTGAAGCATCTTCAAAAAGAAAAGGTATTTGTTTCTCCCTCCCTCCTATGT CTTCATACCCCCAAAAGTGAAGGAAATTGGCTAACTGGTAATGATTGATGATGCAACAGTTATGGAGGAACCACTACCAG CTTGAAGAAACACTGCAAACTTTGATGTAGCATATCCATGTCTTTGCTTTCTGCCGGCCCTGAACCTCGAACTGGTTGGT ATGTGGAGATTTTCCAAACCAACAAGTCACAAGGGAATCAGCAAGCATATATGTCTGCCACTGTGGTTACAAATTGTATT TTTTAAAAAATATTATGTTGAGCTCTCAGTTTATGTGGATTGCTTTTGTATTTTTAAAGTTTTTTTCTTTTGTAACTAGA AATGTTTTAAAAAATGATAATTAGATAAACTTTATTTCGGAAAAAAAAAGTGAGAATCCTCTATGAGTACTTTTGTTCAA GTTGTATATAAAATTTAATAAGTTTTATGGAATATGAATTTAATATGTCTATCAATTGAATTTAGAGTTATTATTATTAA ATTAATCAAGTGTATTGAATTTCATAAAATTTTAAGGTTCTGATTGTTAACGTCAT 

CDS sequence (LotjaGi4g1v0411600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGAATATTTTTGTCAAGAAGCCAAAGGTAACAGATGTGGATCGTGCAATTCTCGCTCTCAAGACCCAGAGACGCAA ACTCGCTCAATATCAGCAAAAGCTTGATGCTGTCATTGAAGCAGAAAAGCAAGCTGCAAGAGACTTGATTCGTGAAAAGA AGAAGGACAGGGCATTGTTAGCATTAAAGAAAAAGAAGGCACAAGAAGAATTGCTGAAGCAAGTTGATGCCTGGCTTTTA AATGTGGAACAACAATTAGCAGATATTGAATTGACAAGCAAGCAGAAGGCTGTGTTTGATAGTTTGAAGGCTGGTAATGA TGCAATGAAAGCCATACAGAGTGAGATAAACATTGAGGATGTTCAGAAACTTATGGATGATACTGCTGAAGCTAAAGCTT ATCAAGATGAAATCAATGCAGTACTAGGGGAGCAGCTATCAGCAGAAGACGAGGAGGAGATTTTAGCAGAATTTGAGAAT TTGGAAACTGAGCTTACTGTCCAGGATCTTCCTGAAGTTCCTACTTCAGTGTCTGAAGATATCAACGAGAAATTAGACCT TCCTGAAGTCCCAATCCAAGCACCAGGTGAAAAAGTTGTTGAAGCATCTTCAAAAAGAAAAGTTATGGAGGAACCACTAC CAGCTTGA 

Protein sequence (LotjaGi4g1v0411600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKAQEELLKQVDAWLL NVEQQLADIELTSKQKAVFDSLKAGNDAMKAIQSEINIEDVQKLMDDTAEAKAYQDEINAVLGEQLSAEDEEEILAEFEN LETELTVQDLPEVPTSVSEDINEKLDLPEVPIQAPGEKVVEASSKRKVMEEPLPA 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 215 215 4.4E-100
PANTHER 1 215 215 4.4E-100
Gene3D 13 90 78 8.1E-6
Coils 14 48 35 -
Pfam 17 193 177 4.6E-42
Coils 50 70 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Vacuolar transport The directed movement of substances into, out of or within a vacuole.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0411600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…