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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0411600 |
| Transcript ID | LotjaGi4g1v0411600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 20; TAIR: AT5G09260.1 vacuolar protein sorting-associated protein 20.2; Swiss-Prot: sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2; TrEMBL-Plants: tr|A0A0L9UEE2|A0A0L9UEE2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0411600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78760627..78764442) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAGAACATGACGAAAAATCGGTTAAAGTGGTATGATACGTCCAAAAGAATACTTTTGGAAGCACCAATGATCAAATG TTAGATTACCTTCTAAAAAAGGATTAAAATCAAATTTATTGAAGAAAAATATCCGATCTTTGTGCCCAACGTTTGGTCTG GTAACATTCAACGAAGATTCAAATCAAAGCTGAAAGAGATTTCATTGGGGCTGGTTGGGAATCCATGAATTTGTTGTGGA TTCCTGTATGATCATCAGGGATAGCGAAACCCTAATTTCAATCATCCAAGTTTGATGGGGAATATTTTTGTCAAGAAGCC AAAGGTAACAGATGTGGATCGTGCAATTCTCGCTCTCAAGACCCAGAGACGCAAACTCGCTCAATATCAGCAAAAGGTTC AACCTTTATTTTCCAATTTACATTTACAATTTAGGTAAAGCATATCTCAATTTTCCAGTTGGGTTCTTTCAGATTATCTT GACCAAATGTGTTGTTCTAGCTGGAGCTTGAAATAGAATCAATCTTTATCTAATTTCTAAGTTTGATACTTTGCAATTGA GTCCTTTTTGTATTTTGTTGCAGCAAATGGATTGTAATATGTAATTGAAAGTAATACTAATAGTGATTCATGAAGATTTT TTATATTTATAAATGGTTAATGTGAATTTGCTGCTCACTTGCCTGTTTATTATAATTGACTCTGGAGCTGGTCAGATTGA TGTGTTTTTCCTAAGTTCTTGGCGTTCGAATTGGTGAAATTAAGAATTAGTAGTTTAGGATTTATTTGAGATTTGAAGTT ATCAACTATGATGAGCAACTATTATTGAGGGTATAATTAATGAAAAATATGGACTACTTGGACTTAATTATGTTGCTGAA ATTTCATATCAGGAGATGATTTTGGGTTTAGGGCATAGTGGTAGATATGATGACTAGCTAGTATTGTTGATTAAGCTATG AAGAAAAGGGCAAGGGGCTCTTGGAATCACTTGAGAGAGTATCAGACATGGCTTGAATGGATATGCCCTTAACATGCACC AGTTTTTAAAATACTATTTAGCACCCCAAGCAAATATACCATAGAAATGCAAGCATTGCACACAGTTTTAACCCCCTCAT TTCTACCAAGGCCTCTGAAATTACTGACAAGAAATACCCTGAACTAGGGACAAATTCCAATCAATTTTCAAGATAAAAGG TGCTTCTAGGAAATGTAAGAACAAATTAGTTGTTGTGGCTTCTAGGCTAGACCAATACACAACACTTACTAAGATAGTGT GCTATAAACTGTCAACAAACCTGCTGAATATCATTGGCATGTTGTGTACATTAATATGTGTAAATGCACAGTTTAACAAT TTCAATCAAAATGGTGTATTAGGACGTGATGGGAGATGCATGTGTGGATTAGAAGTATTCAGTAACTTGCATAAAATTGG CTTGTAAAAAGTTCTATAGTATGCTAATAAGTTTGATGGCTTAGTCATTGGAATCAGACTTTATCTTTTGATCTCCTGTA GGTGAAATAATTAATGACTTCCAATTAATCAAGTTCAGGATCTTTTTTGATATGTCATAACTGTCAGGTCAATGTCAATA GAAATTTTGTACAAAAGTATAATGCTTTTCTGCATTGGATAATTTACCCTATTTCTTTGTTGTGATCCTCTTTTTCAAGC TTGATGCTGTCATTGAAGCAGAAAAGCAAGCTGCAAGAGACTTGATTCGTGAAAAGAAGAAGGACAGGGCATTGTTAGCA TTAAAGAAAAAGAAGGCACAAGAAGAATTGCTGAAGCAAGTTGATGCCTGGCTTTTAAATGTGGAACAACAAGTAATATT TTAATATTCAATATATATTCTCTCTATGGCCCCAATTCAGCCAAAGTGATGGCATGTTATAACTTATAAAGAGTCTCAGG GACTTATTGGTTGCCACTGTGGATCTTGTCTCTAAATGACTTCTTGACACGATCGTACATGTAAAACAAATATGTGGACT CATTCGTTTTGGTTTAGTTAGCAGATATTGAATTGACAAGCAAGCAGAAGGCTGTGTTTGATAGTTTGAAGGCTGGTAAT GATGCAATGAAAGCCATACAGAGTGAGATAAACATTGAGGATGTTCAGAAACTTATGGATGATACTGCTGAAGCTAAAGC TTATCAAGATGTGAGTTTAACTTCATTCTTATCCTTACTCCTACTTCTTTGTGGAAACTGATTTCCATGTCTAGAGTCAT TGCACTGGAGTTGTACTTGTTTGATGCAGCTTTATGAGATGTTTGGTTATTCATATTGCTGCTACGTTCTTTTTTAATAT CCATCTCTCGGTTTCTTTCTGTTTGTATTTGATGTTTCCTGATGGATACCATAATTTTGTTGAATTTGAAGGAAATCAAT GCAGTACTAGGGGAGCAGCTATCAGCAGAAGACGAGGAGGAGATTTTAGCAGAATTTGAGAATTTGGAAACTGAGGTATT ATTTGGAATTTTTTTAAAGAAAAATTGTCTCTTCTCCCTTTCTGTATCTCTTGGCTGGAGAACAGCTTATTTATCAAACA AGGTTTATGGAATGTTCTTTTGTAGGTCGAATCTGTGTTGGTTTTATTATATGGTGAATTAATTTCTAAGATTAATCTTG GCTTATACTGATGAAGCAACATTCCTACTGCATTTAGCTGCACAATGTAAACAGCTGCCAGTTGAAACATATAGAAGTCA AGCTGTGTTTATTCCTCTTAGCAGAATTTTGAGCCACTTATTCATTGCATGGGAGATTTACTCAAAATTTGGTAGAAAGG AAATAATCACATAAAACAATTTCAGCTAAAAAACTTATATAGATCAATAATTTTTAGTCAAGGTAGGATTTACTATGGAG TATAGGTACTCAAATTATTATATATCTATGGTTCTGATGAGGACCACAATAGAACTGAATCTATCTTCAAGGTGTTTTTA CACATTAGATAATGATTTTGTGCCCCTTTGAGATGATGTGCTAGACCATGTCTTAAATTTCTCTTAATGATTAAACAAAG AGGCATGCCATGAATGTGCAATAATAGATGGAGATCATGCATCTAGAAGATGTTATTGTATGATGACTGGTTCTTGTTTT CAGCTTACTGTCCAGGATCTTCCTGAAGTTCCTACTTCAGTGTCTGAAGATATCAACGAGAAATTAGACCTTCCTGAAGT CCCAATCCAAGCACCAGGTGAAAAAGTTGTTGAAGCATCTTCAAAAAGAAAAGGTATTTGTTTCTCCCTCCCTCCTATGT CTTCATACCCCCAAAAGTGAAGGAAATTGGCTAACTGGTAATGATTGATGATGCAACAGTTATGGAGGAACCACTACCAG CTTGAAGAAACACTGCAAACTTTGATGTAGCATATCCATGTCTTTGCTTTCTGCCGGCCCTGAACCTCGAACTGGTTGGT ATGTGGAGATTTTCCAAACCAACAAGTCACAAGGGAATCAGCAAGCATATATGTCTGCCACTGTGGTTACAAATTGTATT TTTTAAAAAATATTATGTTGAGCTCTCAGTTTATGTGGATTGCTTTTGTATTTTTAAAGTTTTTTTCTTTTGTAACTAGA AATGTTTTAAAAAATGATAATTAGATAAACTTTATTTCGGAAAAAAAAAGTGAGAATCCTCTATGAGTACTTTTGTTCAA GTTGTATATAAAATTTAATAAGTTTTATGGAATATGAATTTAATATGTCTATCAATTGAATTTAGAGTTATTATTATTAA ATTAATCAAGTGTATTGAATTTCATAAAATTTTAAGGTTCTGATTGTTAACGTCAT
CDS sequence (LotjaGi4g1v0411600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATATTTTTGTCAAGAAGCCAAAGGTAACAGATGTGGATCGTGCAATTCTCGCTCTCAAGACCCAGAGACGCAA ACTCGCTCAATATCAGCAAAAGCTTGATGCTGTCATTGAAGCAGAAAAGCAAGCTGCAAGAGACTTGATTCGTGAAAAGA AGAAGGACAGGGCATTGTTAGCATTAAAGAAAAAGAAGGCACAAGAAGAATTGCTGAAGCAAGTTGATGCCTGGCTTTTA AATGTGGAACAACAATTAGCAGATATTGAATTGACAAGCAAGCAGAAGGCTGTGTTTGATAGTTTGAAGGCTGGTAATGA TGCAATGAAAGCCATACAGAGTGAGATAAACATTGAGGATGTTCAGAAACTTATGGATGATACTGCTGAAGCTAAAGCTT ATCAAGATGAAATCAATGCAGTACTAGGGGAGCAGCTATCAGCAGAAGACGAGGAGGAGATTTTAGCAGAATTTGAGAAT TTGGAAACTGAGCTTACTGTCCAGGATCTTCCTGAAGTTCCTACTTCAGTGTCTGAAGATATCAACGAGAAATTAGACCT TCCTGAAGTCCCAATCCAAGCACCAGGTGAAAAAGTTGTTGAAGCATCTTCAAAAAGAAAAGTTATGGAGGAACCACTAC CAGCTTGA
Protein sequence (LotjaGi4g1v0411600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKAQEELLKQVDAWLL NVEQQLADIELTSKQKAVFDSLKAGNDAMKAIQSEINIEDVQKLMDDTAEAKAYQDEINAVLGEQLSAEDEEEILAEFEN LETELTVQDLPEVPTSVSEDINEKLDLPEVPIQAPGEKVVEASSKRKVMEEPLPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 215 | 215 | 4.4E-100 | – | |
| PANTHER | 1 | 215 | 215 | 4.4E-100 | – | |
| Gene3D | 13 | 90 | 78 | 8.1E-6 | – | |
| Coils | 14 | 48 | 35 | - | – | |
| Pfam | 17 | 193 | 177 | 4.6E-42 | ||
| Coils | 50 | 70 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi4g1v0411600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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