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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0411600 |
Transcript ID | LotjaGi4g1v0411600.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Vacuolar protein sorting-associated protein 20; TAIR: AT5G09260.1 vacuolar protein sorting-associated protein 20.2; Swiss-Prot: sp|Q9FY89|VP202_ARATH Vacuolar protein sorting-associated protein 20 homolog 2; TrEMBL-Plants: tr|G7JC58|G7JC58_MEDTR Vacuolar sorting-associated-like protein; Found in the gene: LotjaGi4g1v0411600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78761671..78764148) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGAATATTTTTGTCAAGAAGCCAAAGGTAACAGATGTGGATCGTGCAATTCTCGCTCTCAAGACCCAGAGACGCAA ACTCGCTCAATATCAGCAAAAGGTTCAACCTTTATTTTCCAATTTACATTTACAATTTAGGTAAAGCATATCTCAATTTT CCAGTTGGGTTCTTTCAGATTATCTTGACCAAATGTGTTGTTCTAGCTGGAGCTTGAAATAGAATCAATCTTTATCTAAT TTCTAAGTTTGATACTTTGCAATTGAGTCCTTTTTGTATTTTGTTGCAGCAAATGGATTGTAATATGTAATTGAAAGTAA TACTAATAGTGATTCATGAAGATTTTTTATATTTATAAATGGTTAATGTGAATTTGCTGCTCACTTGCCTGTTTATTATA ATTGACTCTGGAGCTGGTCAGATTGATGTGTTTTTCCTAAGTTCTTGGCGTTCGAATTGGTGAAATTAAGAATTAGTAGT TTAGGATTTATTTGAGATTTGAAGTTATCAACTATGATGAGCAACTATTATTGAGGGTATAATTAATGAAAAATATGGAC TACTTGGACTTAATTATGTTGCTGAAATTTCATATCAGGAGATGATTTTGGGTTTAGGGCATAGTGGTAGATATGATGAC TAGCTAGTATTGTTGATTAAGCTATGAAGAAAAGGGCAAGGGGCTCTTGGAATCACTTGAGAGAGTATCAGACATGGCTT GAATGGATATGCCCTTAACATGCACCAGTTTTTAAAATACTATTTAGCACCCCAAGCAAATATACCATAGAAATGCAAGC ATTGCACACAGTTTTAACCCCCTCATTTCTACCAAGGCCTCTGAAATTACTGACAAGAAATACCCTGAACTAGGGACAAA TTCCAATCAATTTTCAAGATAAAAGGTGCTTCTAGGAAATGTAAGAACAAATTAGTTGTTGTGGCTTCTAGGCTAGACCA ATACACAACACTTACTAAGATAGTGTGCTATAAACTGTCAACAAACCTGCTGAATATCATTGGCATGTTGTGTACATTAA TATGTGTAAATGCACAGTTTAACAATTTCAATCAAAATGGTGTATTAGGACGTGATGGGAGATGCATGTGTGGATTAGAA GTATTCAGTAACTTGCATAAAATTGGCTTGTAAAAAGTTCTATAGTATGCTAATAAGTTTGATGGCTTAGTCATTGGAAT CAGACTTTATCTTTTGATCTCCTGTAGGTGAAATAATTAATGACTTCCAATTAATCAAGTTCAGGATCTTTTTTGATATG TCATAACTGTCAGGTCAATGTCAATAGAAATTTTGTACAAAAGTATAATGCTTTTCTGCATTGGATAATTTACCCTATTT CTTTGTTGTGATCCTCTTTTTCAAGCTTGATGCTGTCATTGAAGCAGAAAAGCAAGCTGCAAGAGACTTGATTCGTGAAA AGAAGAAGGACAGGGCATTGTTAGCATTAAAGAAAAAGAAGGCACAAGAAGAATTGCTGAAGCAAGTTGATGCCTGGCTT TTAAATGTGGAACAACAAGTAATATTTTAATATTCAATATATATTCTCTCTATGGCCCCAATTCAGCCAAAGTGATGGCA TGTTATAACTTATAAAGAGTCTCAGGGACTTATTGGTTGCCACTGTGGATCTTGTCTCTAAATGACTTCTTGACACGATC GTACATGTAAAACAAATATGTGGACTCATTCGTTTTGGTTTAGTTAGCAGATATTGAATTGACAAGCAAGCAGAAGGCTG TGTTTGATAGTTTGAAGGCTGGTAATGATGCAATGAAAGCCATACAGAGTGAGATAAACATTGAGGATGTTCAGAAACTT ATGGATGATACTGCTGAAGCTAAAGCTTATCAAGATGTGAGTTTAACTTCATTCTTATCCTTACTCCTACTTCTTTGTGG AAACTGATTTCCATGTCTAGAGTCATTGCACTGGAGTTGTACTTGTTTGATGCAGCTTTATGAGATGTTTGGTTATTCAT ATTGCTGCTACGTTCTTTTTTAATATCCATCTCTCGGTTTCTTTCTGTTTGTATTTGATGTTTCCTGATGGATACCATAA TTTTGTTGAATTTGAAGGAAATCAATGCAGTACTAGGGGAGCAGCTATCAGCAGAAGACGAGGAGGAGATTTTAGCAGAA TTTGAGAATTTGGAAACTGAGGTATTATTTGGAATTTTTTTAAAGAAAAATTGTCTCTTCTCCCTTTCTGTATCTCTTGG CTGGAGAACAGCTTATTTATCAAACAAGGTTTATGGAATGTTCTTTTGTAGGTCGAATCTGTGTTGGTTTTATTATATGG TGAATTAATTTCTAAGATTAATCTTGGCTTATACTGATGAAGCAACATTCCTACTGCATTTAGCTGCACAATGTAAACAG CTGCCAGTTGAAACATATAGAAGTCAAGCTGTGTTTATTCCTCTTAGCAGAATTTTGAGCCACTTATTCATTGCATGG
CDS sequence (LotjaGi4g1v0411600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATATTTTTGTCAAGAAGCCAAAGGTAACAGATGTGGATCGTGCAATTCTCGCTCTCAAGACCCAGAGACGCAA ACTCGCTCAATATCAGCAAAAGCTTGATGCTGTCATTGAAGCAGAAAAGCAAGCTGCAAGAGACTTGATTCGTGAAAAGA AGAAGGACAGGGCATTGTTAGCATTAAAGAAAAAGAAGGCACAAGAAGAATTGCTGAAGCAAGTTGATGCCTGGCTTTTA AATGTGGAACAACAATTAGCAGATATTGAATTGACAAGCAAGCAGAAGGCTGTGTTTGATAGTTTGAAGGCTGGTAATGA TGCAATGAAAGCCATACAGAGTGAGATAAACATTGAGGATGTTCAGAAACTTATGGATGATACTGCTGAAGCTAAAGCTT ATCAAGATGAAATCAATGCAGTACTAGGGGAGCAGCTATCAGCAGAAGACGAGGAGGAGATTTTAGCAGAATTTGAGAAT TTGGAAACTGAGCTTATTTATCAAACAAGCAACATTCCTACTGCATTTAGCTGCACAATGTAA
Protein sequence (LotjaGi4g1v0411600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKAQEELLKQVDAWLL NVEQQLADIELTSKQKAVFDSLKAGNDAMKAIQSEINIEDVQKLMDDTAEAKAYQDEINAVLGEQLSAEDEEEILAEFEN LETELIYQTSNIPTAFSCTM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 174 | 174 | 8.5E-92 | – | |
PANTHER | 1 | 174 | 174 | 8.5E-92 | – | |
Gene3D | 13 | 90 | 78 | 5.5E-6 | – | |
Coils | 14 | 48 | 35 | - | – | |
Pfam | 17 | 169 | 153 | 4.9E-40 | ||
Coils | 50 | 70 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi4g1v0411600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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