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LotjaGi4g1v0413400.2

Overview

Field Value
Gene ID LotjaGi4g1v0413400
Transcript ID LotjaGi4g1v0413400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Polyketide cyclase/dehydrase and lipid transporter; TAIR: AT5G08720.1 polyketide cyclase/dehydrase/lipid transporter; Swiss-Prot: sp|P23154|CYPC_STRCO Putative polyketide cyclase; TrEMBL-Plants: tr|G7LFP8|G7LFP8_MEDTR Polyketide cyclase/dehydrase and lipid transporter; Found in the gene: LotjaGi4g1v0413400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:78916646..78922138) extracted from Lotus japonicus Gifu genome v1.2.

ACCAATTCATATGCAGCAGAAAACTCTGTTTGATGAAGAAGAAGCTCTGTTTCATCTTCTCCAAACACACCACTCATACT CATGAACACTACCACATGCTGTAGAGCTTCTTCAACCACCAACCTTGGACTTGGACCCCACCACCTTGTTCCTCTGCGAC TGCACTCCATTTCCAAACCACCATTTCTGTCTCTCACCCTCTTCTTCCCCTTCCACCATCACAAGACCACTCCTCTCTCC TCAACTCAGTTCAAACCCAGAACCCATTTTGGCAAAGAAGGGAACTTCACTGCACCACAAGAAGAAGAAGAAGAAGAAGG TGACCGCGAAGTCCACTGTGAGCTCCACGTGGTTTCTTGGAGGGAACGGACAGTCAAAGCAGAGATTTCCATCAATGCTG ACATTCATTCCGTTTGGAAAGCTCTCACTGATTACGAGCACCTCGCTGATTTTATTCCAAATCTTGTGTGGAGGTAATGA AAGTTTTGATTTGGAAGCTATTTGTTTGTTTGTTTATGAGTGTTGTTTTGTTGTTAGTGGACGAATTCCTTGCCCACATC CGGGGCGGATATGGTTAGAGCAAAGAGGGTTTCAAAGGGCTATGTATTGGCATATAGAAGCTCGTGTTGTGTTGGATCTT CAAGAGATACTCAATTCTGTAAGCATTCTTAAACATTCCATGTTATTTTTCAATAGATTCTGTTTGTAACTGGGAAATGT ACACCTAGGATTAGGAAGAATGGATTCATGGAACACTTATGCAATATACAACAAGTTTTAGTAATTATAGGGGAAGATGA AGATAGTTGCAGTATAACATATAAAATCAACATAAAGTTAAGAAGTTGTGATGCTTCTCATCTGTATAAATATAAATAAA CTAGAAGTTAAATAAAGAAACTTGATGTGAGTTGGAACTTAATACTATTTAATTCTCTTATTGCTTCAGGTGTGGGATCG GGAACTTCGCTTTTCCATGGTAGATGGAGACTTTAAGAAGTTTGAGGGCAAATGGTCTGTAAAATCAGGAACAAGGTAGG ATCTATACCTATGAGAGCCCTTGCTTACTACTATTTACTAAGTAACCTTGCATAGTGTAAAGAAACTATATTTTGATTTA CTTGTGAACTCACTGAACAGTGTTACTCAAGGTTGCCTCATTCAAAACCAGCATGCTTATATGTATTACTCCATGCTAAT TTAAAGTCAGAACCCTCTAAGTTCTGATGACTGAAGAGGTTCCAACTTTGACCTTTGTCTAGACATATTTATGTTATATA TACCATAAGTTTGAATCTGTGGGACTCCCTTTTAGATTCAAGGAAGTTCATATATGACTCTGTTGAATAGTACCATATCA ATGTGTTTTGAACTTGAATTTTTGAATTTGTTATTCTTTTGTATGGGCCAAAATGCGATTATATGAGAGGGAGTGAAAGA AACACTTAACTTAAAGCAAGTAATGATATCCATACTATATATTAATGAATTATGAACCAGATATGACAATGAAGCTTAGC TATCCCTTTTGTTTACTGTTTTCATTTTCCATTGCCACAGAACTTTTTGGATCTTCCAATTCTTTTTCTTGCAGGTCATC ATCAACAATTTTATCTTATGAAGTTAATGTGATACCAAGATTCAATTTCCCAGCTATTTTCTTGGAAAGGATAATCAGAT CTGATCTTCCTGTTAACCTCAGAGCCTTGGCATATAGAGTTGAAAGGAATATTACGGGGAATCAGAGACTTCCCCTGCAA GAAAATAACTTGCATAAAAATTCTATGGCTAATGCGCCACCTGTCGAAAAGATAAATGGTACTTTGTGTGAAAGTGATAA ATTGCTACCTGGAGAGAACAAAGAAGGTTTGGCCAGCTCGATTTCTGGTTCCTTGCCCACAAGTTCCAGTGAGGTCAACA GCAATTGGGGTGTATTTGGAAAAGTTTGTAGACTTGACAGGCCTTGTGTGGTGGATGAAGTTCATCTCCGCAGATTTGAT GGACTTTTGGTAACCTATCCTTTCTAAATTGTTAGGAGCTGGCTTTAATTCTGAGAATGAGCCATATTTGTTGTCAAAGT TACAAATAAAATTATATTCATGTGAAGGAAAATGGAGGTGTACATCGCTGTGTTGTTGCAAGCATAACAGTTAAAGCTCC TGTTCGTGATGTTTGGAATATTCTGTCTTCCTATGAGACTCTTCCTGAGTAAGTTATTTATCGTTCTTCTTTACACTAAG GAAAACAATGATGTGAAAGATTTCTAGATCTTATGTTCCAATTTTTTTTACTTGTTGCAGGATAGTTCCAAATTTAGCTA TCAGTAAGGTTTTATCAAGAGATAATAATAAAGTCCGCATTCTTCAGGTAAGATTGCATGTTGAGCAGAGTCTACAGTGA GAGAAACATAGCTGTTAATATTTTTCCAGCCACTGTGTTATGCTTACCAACCATTGTTTTACCATCGCCATCCACCGTAA GCAAACTACCGAACCATTTACATGGCACAAATGCTAATATAAGAATGAATTTGCGATACAGTGTTATCCATAAATTATGT TATTGATGTAATTTCCTGGATGTATCAATGTGTAGGAAGGGTGTAAGGGCCTGCTTTACATGGTGCTTCATGCTCGGGTT GTGTTAGACTTGTGGGAGCACCTTGAACAAGAGATCAGTTTTGAACAGGTTGAAGGGGACTTTGACTCATTCCAGGGAAA ATGGATTTTTGAACAACTAGGAAATCATCATACACTGCTGAAGTATTCTGTTGAGTCAAAAATGCGCAAAGATACTTTCC TTTCTGAAGCTATCATGGAAGAGGTGTCTCTACTTGTCTGATTTGGTTGATTATCAATTACATTGCTTTTAGTATTTAGC TTGATTATTTCCAAGAATTCAACACCCTACTTTTCATTGTTGTCCACCTAAGACAGCCTTTGCATAAAAACTGGAAAGGA GCTCTGTTATCTAACTCAATGCGCTTGGCCTATATCCATGTCTCTTTTTACATAAGAAAACTGTAAAAATCTGTTTACCT TTGTTTGTTTAGATACAGTCTTTTGAAGGTAAATTGATCCACTTAAATGCCGCTCCAAACAATACACACCCACACATATA CACACACGCATACACATTGAGTATTTGAATGCCTGAAATATTGCCAGTTCTTCTACCTCAGGTCATTTATGAAGATCTCC CATCAAACTTGTGTGCAATAAGAGACTATGTTGAGAACAGGAAAGCGTCAAATTTTTCGGAAGTTTGTGAGCAGAATACA AAGTCAGAGCAACAAATTAATTCATCTGGCTCTGGAGATGAAGACAGCTGTGGTTCAGCTGACAACCTTTCAGATTGCGG TGGTCAAAGCAGCTCCTGTCAACAAAGGCCAAGAGTTCCAGGCTTACAGAGGGATATTGAAGTCCTAAAATCCGAACTCA CGAAATTCATTGCTGAACATGGACAGGAAGGATTTATGCCAATGAGGAAGCAACTTCGTTTGCACAGTCGAGTGGATATT GAAAAGGCTATAACCCGCATGGGTGGATTCAGGAAGATCGCAACAATAATGGACCTCTCTCTGGCTTACAAACACCGCAA ACCCAAAGGTTACTGGGACAATCTTGAAAATATGCAAGATGAGGTAGGCTGCAAAGTTCCATTCTTGATACCAGAATGAT AAATGTTATGCATCTAGGAAAGATTATTTCATGACAAAGCCATTACGTTGTTTATAGTTTCAACAGAATATAATTCATTT CTTTATGCAGATAAGTAGATTTCAAAGAAGCTGGGGAATGGACCCTTCTTTTATGCCCAGTAGAAAGTCATTAGAGCGCG CAGGTAGGCTTTGATTTATTGCTTCACAACAAAATTTTAACTTCACTCTCTCTCAAGTCACTAATACAAATCCTTGTACA ATTGACTCTAGCTCAATCATAATTGATTCTTGCTTTAGAATCAATTATGGGAAGAAGCTTCTGTGGGTTGCTTCTGGGTA TCTCTAGGTTGATTCAAACATGCTATAAGAAAGATGGCGGAACCTGTAAATATTACACATCTAGGGCTTCTTCCCACTTC ATTTTGAACTTAGGAGTGTGTGAATTTTCCCGCAGGGCGCTTCGATATAGCACGGGCACTGGAAAAGTGGGGTGGACTTC ATGAGGTTTCTCGCCTTCTGTCCCTCAAAGTGAGGAGGAAACGAAGCAGACAACACAACCTTGTCAAGGACAAGAAAATT GATCCTATAGCAGAACCTGATGTAGATAGTGAGATCAAGGAACCATCTAGACCTTGTATTTCTCAAGATACACACAAGTG GCATACAAAACTGAAACAGTTGGACATAAATTGGATAGAGTAAAAACAGCATTGATGTACCGTATTGGTTTTATGTATAT CCATGCATTGATAGTAACATAACTCCCAGCACTCAGATTTGCCCTGTTTTCCTGGTTTATGTATGATTGAGAATGTGTAT GAGTGTCCAGCTAAGTAGTTAACTAATTAAAAATTTGCATCTTTGATCATGTAAGCACACAATAGACTAAAGAACTATAG ATACAATATCATCATAATCAAAAGTAGAATACATTAATTGACATTCAGCGCCGTAAACACTTATCCTATACTTTCAAATT AAACAACAAGCTATGCAGCACCGTATATATCTTCCTTCTTGTCCACCTTGGCTTCAATTTAGAATTAGAACACCACAGAG GAAGAAGCACTCTCGTACTTAACCATATGATCTAGGGACATGTGACTTGGTTCCTCGCGGAAAGAAGGTAGCAGAGAGGT TAGTTTGATGTCGTAGATTCTGGAATCAGAGATGCCATCCCAAGAGTGAGAGGGCAAGGTGTGAGCATAGCCAAGGTGGT TGCCGCACCCACGGCAGAGGAGCTTGGTTCTCCTGCGCTGGAACAGACCCCATTGGCGGCGCTTGGAGCTGAAAAAGGGT ATCCACGACCAGGGAAGTTGTTGGACCTGAGTGAACCTGCTCTCATCCAAAGAGAAGAAGGAGATGAGACCTTTCTTTAT GGACTTTCCATATCCGGAATCAATGAGGGAGGTGTTGCGGTTGCTGGAATTCAAGTTTAGCTCATAACCACACGAGCCAC AGCTGCAAGAGGAATAGATGGTAGTTTAGTTTGCATTTGAAAGCTCAAAAATTCAAAATCGAACAGTGAAGTGGACTGTG AACACACACACTCATGATACATAGTAAGTAGTACATGTAGAGGGAGAGTGAGAGAGATAGAGGACCTGTAATTTACATCT CTGATAAAGGAAGAGAGGTGAAGTTGTTGACATTGGGATGATCCCTCAAGCATGTCACTATAGGGGATCATCCTTCACTC CTTTGTATGTGCTAGGACTTGAGGTAGACAGAGAAAGAGAGTTTATAGTGAAGAAGAGCTTCAGAGACACATGGCCGGTG GCCCCATTTATCAGCTCATAACGGTAACAATAGAAAGCAACAAATTATAATCA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0413400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACACTACCACATGCTGTAGAGCTTCTTCAACCACCAACCTTGGACTTGGACCCCACCACCTTGTTCCTCTGCGACT GCACTCCATTTCCAAACCACCATTTCTGTCTCTCACCCTCTTCTTCCCCTTCCACCATCACAAGACCACTCCTCTCTCCT CAACTCAGTTCAAACCCAGAACCCATTTTGGCAAAGAAGGGAACTTCACTGCACCACAAGAAGAAGAAGAAGAAGAAGGT GACCGCGAAGTCCACTGTGAGCTCCACGTGGTTTCTTGGAGGGAACGGACAGTCAAAGCAGAGATTTCCATCAATGCTGA CATTCATTCCGTTTGGAAAGCTCTCACTGATTACGAGCACCTCGCTGATTTTATTCCAAATCTTGTGTGGAGTGGACGAA TTCCTTGCCCACATCCGGGGCGGATATGGTTAGAGCAAAGAGGGTTTCAAAGGGCTATGTATTGGCATATAGAAGCTCGT GTTGTGTTGGATCTTCAAGAGATACTCAATTCTGTGTGGGATCGGGAACTTCGCTTTTCCATGGTAGATGGAGACTTTAA GAAGTTTGAGGGCAAATGGTCTGTAAAATCAGGAACAAGGTCATCATCAACAATTTTATCTTATGAAGTTAATGTGATAC CAAGATTCAATTTCCCAGCTATTTTCTTGGAAAGGATAATCAGATCTGATCTTCCTGTTAACCTCAGAGCCTTGGCATAT AGAGTTGAAAGGAATATTACGGGGAATCAGAGACTTCCCCTGCAAGAAAATAACTTGCATAAAAATTCTATGGCTAATGC GCCACCTGTCGAAAAGATAAATGGTACTTTGTGTGAAAGTGATAAATTGCTACCTGGAGAGAACAAAGAAGGTTTGGCCA GCTCGATTTCTGGTTCCTTGCCCACAAGTTCCAGTGAGGTCAACAGCAATTGGGGTGTATTTGGAAAAGTTTGTAGACTT GACAGGCCTTGTGTGGTGGATGAAGTTCATCTCCGCAGATTTGATGGACTTTTGGAAAATGGAGGTGTACATCGCTGTGT TGTTGCAAGCATAACAGTTAAAGCTCCTGTTCGTGATGTTTGGAATATTCTGTCTTCCTATGAGACTCTTCCTGAGATAG TTCCAAATTTAGCTATCAGTAAGGTTTTATCAAGAGATAATAATAAAGTCCGCATTCTTCAGGAAGGGTGTAAGGGCCTG CTTTACATGGTGCTTCATGCTCGGGTTGTGTTAGACTTGTGGGAGCACCTTGAACAAGAGATCAGTTTTGAACAGGTTGA AGGGGACTTTGACTCATTCCAGGGAAAATGGATTTTTGAACAACTAGGAAATCATCATACACTGCTGAAGTATTCTGTTG AGTCAAAAATGCGCAAAGATACTTTCCTTTCTGAAGCTATCATGGAAGAGGTCATTTATGAAGATCTCCCATCAAACTTG TGTGCAATAAGAGACTATGTTGAGAACAGGAAAGCGTCAAATTTTTCGGAAGTTTGTGAGCAGAATACAAAGTCAGAGCA ACAAATTAATTCATCTGGCTCTGGAGATGAAGACAGCTGTGGTTCAGCTGACAACCTTTCAGATTGCGGTGGTCAAAGCA GCTCCTGTCAACAAAGGCCAAGAGTTCCAGGCTTACAGAGGGATATTGAAGTCCTAAAATCCGAACTCACGAAATTCATT GCTGAACATGGACAGGAAGGATTTATGCCAATGAGGAAGCAACTTCGTTTGCACAGTCGAGTGGATATTGAAAAGGCTAT AACCCGCATGGGTGGATTCAGGAAGATCGCAACAATAATGGACCTCTCTCTGGCTTACAAACACCGCAAACCCAAAGGTT ACTGGGACAATCTTGAAAATATGCAAGATGAGATAAGTAGATTTCAAAGAAGCTGGGGAATGGACCCTTCTTTTATGCCC AGTAGAAAGTCATTAGAGCGCGCAGGGCGCTTCGATATAGCACGGGCACTGGAAAAGTGGGGTGGACTTCATGAGGTTTC TCGCCTTCTGTCCCTCAAAGTGAGGAGGAAACGAAGCAGACAACACAACCTTGTCAAGGACAAGAAAATTGATCCTATAG CAGAACCTGATGTAGATAGTGAGATCAAGGAACCATCTAGACCTTGTATTTCTCAAGATACACACAAGTGGCATACAAAA CTGAAACAGTTGGACATAAATTGGATAGAGTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0413400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNTTTCCRASSTTNLGLGPHHLVPLRLHSISKPPFLSLTLFFPFHHHKTTPLSSTQFKPRTHFGKEGNFTAPQEEEEEEG DREVHCELHVVSWRERTVKAEISINADIHSVWKALTDYEHLADFIPNLVWSGRIPCPHPGRIWLEQRGFQRAMYWHIEAR VVLDLQEILNSVWDRELRFSMVDGDFKKFEGKWSVKSGTRSSSTILSYEVNVIPRFNFPAIFLERIIRSDLPVNLRALAY RVERNITGNQRLPLQENNLHKNSMANAPPVEKINGTLCESDKLLPGENKEGLASSISGSLPTSSSEVNSNWGVFGKVCRL DRPCVVDEVHLRRFDGLLENGGVHRCVVASITVKAPVRDVWNILSSYETLPEIVPNLAISKVLSRDNNKVRILQEGCKGL LYMVLHARVVLDLWEHLEQEISFEQVEGDFDSFQGKWIFEQLGNHHTLLKYSVESKMRKDTFLSEAIMEEVIYEDLPSNL CAIRDYVENRKASNFSEVCEQNTKSEQQINSSGSGDEDSCGSADNLSDCGGQSSSCQQRPRVPGLQRDIEVLKSELTKFI AEHGQEGFMPMRKQLRLHSRVDIEKAITRMGGFRKIATIMDLSLAYKHRKPKGYWDNLENMQDEISRFQRSWGMDPSFMP SRKSLERAGRFDIARALEKWGGLHEVSRLLSLKVRRKRSRQHNLVKDKKIDPIAEPDVDSEIKEPSRPCISQDTHKWHTK LKQLDINWIE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
50 81 32 - –
PANTHER
PTHR34060
63 730 668 0.0 –
PANTHER
PTHR34060:SF2
63 730 668 0.0 –
Gene3D
G3DSA:3.30.530.20
90 247 158 6.7E-26
IPR023393
SUPERFAMILY
SSF55961
97 244 148 1.26E-17 –
CDD
cd08866
98 244 147 1.76281E-51 –
Pfam
PF03364
104 238 135 3.0E-20
IPR005031
Gene3D
G3DSA:3.30.530.20
345 501 157 1.5E-31
IPR023393
CDD
cd08866
347 488 142 1.84299E-55 –
SUPERFAMILY
SSF55961
348 492 145 4.13E-21 –
Pfam
PF03364
353 484 132 1.4E-20
IPR005031
MobiDBLite
mobidb-lite
503 541 39 - –
MobiDBLite
mobidb-lite
503 542 40 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0413400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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