Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0417000 |
Transcript ID | LotjaGi4g1v0417000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Hemoglobin subunit alpha-1; TAIR: AT5G07330.1 NFU1 iron-sulfur cluster protein; Swiss-Prot: sp|Q9SFU0|SC24A_ARATH Protein transport protein Sec24-like At3g07100; TrEMBL-Plants: tr|C6SWY9|C6SWY9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0417000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79270480..79271819) extracted from Lotus japonicus Gifu genome v1.2.
CCCAAGCACATCTAATCCATCAAACTATATAATCAAGGTAACCGCAAAAATCAATGACAGAAACAGCATCAAGCAACGAA CATAAACTGTTCCTATAACTGTACACTTCTACAATTATCTAGTTTCATCGCTCCAATTCGATTTGCACTCATGGCTTTCA GGCCTACGGTACAATTTTGTTTATTCTATGTTTTCTCTGAATATGTCAAATTAGTCTCAGTTTAATTTTCGTTAAACTCA ACATGAAGATCGAAGTCTGTCTAAAAACTGCATCTCTGATCCATATACAGTGAAATCACGTTTGTGTTGGCTTTAACGTG AAATAAAATTGCTTAGTATGTTATGTAATAATGGTTTTGGTTTGATATGTTATGGTGCAGATGAGTACTTGGATAGCAAT GTTGAATGGTTTCCGTGGAGGCAAAGCTGCATACACAACCTCAACAGTGCCAAAGATGAAGGCTTATGCTCCTACGACGG ATTACCACCACCACCGTCAACCTGGGAAGTCATCAGGGAAAAAGGACTTCGTGCCCGTCTATGTGGCGGTTGGATTGATA GCCATGGCCTCAGCGTTCGGCCTCCACACGGCGTGGCAGCAACTGAGGAACTCGCCCGGTGTGCGGGTGAAGAAGCAGAG GAGGGAGACTCTGCCGGAGGTGGTGGAGCCGGATCACGTGGCCGGGGAAGCTGACAAGTTTCTCAAGCAATCGTTCTTCA GGAAAATTGCTCACGTGCAGGAGCGTAGCTACCCTGATCATAACCAGATGCCTGATCCAACTCGCAAAGATGCCTACGCC TATGAACCTCGTGTTGAGACTCTCAAGTCCGTTGGGGTTGACCCATCGCACGTGTGATGATGTGGAGATTGGAGATTATG TTGTGTTTACTGGTGTAATCATTCTCATTGATTGTGATGCACTTAACTGGTGTTCACAGTCACACACTAAATAATTAGTG AAGTTTTTAAGTGTTGTAATTCCTTTTAATCATGAGGGCAGGCTGTAAATAGAACTCTAAGGTGACTTTAATTATAGCAT TGTAGTTTCATGTTTTAATGATATGACTTTAATTATTTGAAGGCTCCTTGCTATCACATTGCTGATATCGTATCTTTGCT TGGATGTGGATACTTGTCTTTAAACACTGTGGGTTGCTCCTTGGAAATTTCACTTTGATTTAAATTTTAGTGAGTTAGTA CTCTTTTTCCTTCAATAGGTTTTTCCAAGGGATTTTTTCCTAGTAAGGTTTTAATGAGGCTTTCTCGCTAAATCCTATTT CTAAGGAGTTCGGGGGGTTTTTGTGGGTGTTTGTAGGATCATTGTAACTGTAACTGTGAT
CDS sequence (LotjaGi4g1v0417000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCAGGCCTACGATGAGTACTTGGATAGCAATGTTGAATGGTTTCCGTGGAGGCAAAGCTGCATACACAACCTC AACAGTGCCAAAGATGAAGGCTTATGCTCCTACGACGGATTACCACCACCACCGTCAACCTGGGAAGTCATCAGGGAAAA AGGACTTCGTGCCCGTCTATGTGGCGGTTGGATTGATAGCCATGGCCTCAGCGTTCGGCCTCCACACGGCGTGGCAGCAA CTGAGGAACTCGCCCGGTGTGCGGGTGAAGAAGCAGAGGAGGGAGACTCTGCCGGAGGTGGTGGAGCCGGATCACGTGGC CGGGGAAGCTGACAAGTTTCTCAAGCAATCGTTCTTCAGGAAAATTGCTCACGTGCAGGAGCGTAGCTACCCTGATCATA ACCAGATGCCTGATCCAACTCGCAAAGATGCCTACGCCTATGAACCTCGTGTTGAGACTCTCAAGTCCGTTGGGGTTGAC CCATCGCACGTGTGA
Protein sequence (LotjaGi4g1v0417000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFRPTMSTWIAMLNGFRGGKAAYTTSTVPKMKAYAPTTDYHHHRQPGKSSGKKDFVPVYVAVGLIAMASAFGLHTAWQQ LRNSPGVRVKKQRRETLPEVVEPDHVAGEADKFLKQSFFRKIAHVQERSYPDHNQMPDPTRKDAYAYEPRVETLKSVGVD PSHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 56 | 56 | - | – | |
PANTHER | 3 | 162 | 160 | 3.4E-62 | – | |
PANTHER | 3 | 162 | 160 | 3.4E-62 | – | |
TMHMM | 56 | 78 | 23 | - | – | |
Phobius | 57 | 78 | 22 | - | – | |
Phobius | 79 | 164 | 86 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0417000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…