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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0417200 |
| Transcript ID | LotjaGi4g1v0417200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial carrier-like protein; TAIR: AT5G51050.1 Mitochondrial substrate carrier family protein; Swiss-Prot: sp|Q5XH95|SCMC2_XENTR Calcium-binding mitochondrial carrier protein SCaMC-2; TrEMBL-Plants: tr|K7KRB9|K7KRB9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0417200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79281339..79284362) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTGGTGCAGGCCAAGCCATGGACCATGTGGGGTTTCCCAAGGCGAAATCCACGGCGGCGCCGACGGCGGCTCAGGG CAAGAAAACCGGTCCGGTTTCGATGGATCATGTTCTTCTGGCTTTGCGTGAGACCAAGGAAGAGAGGGATCTTAGAATTC GGAGTCTCTTCAATTTCTTCGACTCTGCTAACAAAGGCTACTTGGACTATGCTCACATTGAAACGGGTTTATCTGCACTG CAGATACCCCCTGAGTATAAGTATGCTAAGGAACTCTTCAAGGTTTGTGATGCTGATAGGGATGGCAGGGTAGATTACCA TGATTTCAGGCGCTATATGGATGACAAGGAGCTTGAGCTTTACCGCATTTTTCAAGCTATTGATGTGGAGCACAGTGGCT GCATTCTCCCTGAAGAGCTTTGGGATGCACTTGTCAAGGCTGGTATTCCTTTAGCCCCTTTCATGCAACTCACTTTGATT GATAATTGTGCTGTTTCATCACTTATGCCTTGTACTTGTGATTATTGCCTGGGGTTTAGTTATATGTTTATTCATGTTGT TGACATTGTTGTTGTTTGATCTATCTTCATCATCCTTTTATGCTTAGTGTGCAGAATCCTTGAACACTTAAACTTGGTTT GCTTAAACAATTATTGAATAAGCTCTTTAAACTCACATATTATAAGTAATTACTGAATTAGGGTCGGTTTGTTTCCGCGT TTGAAGGGAAGAAAAAATACGGGTGTTTTTTTTATAATGGTCTCATTGGTGGATTATAAAAATGTGTGTGACGAAACGCG CGTGTTCAAACATACACATAGTATTTAATTAAGTTGTTTACCAAATGCACCCTTATTCCTTTATGGTGTCATAATTATGT TGTTTGGCTGTTGCTTGCCATTTTTCTTCACCATTAGTGGGCTGTGGGGCTAGACATGTTGGCATTTGATGTTACTAGTA CTACTTAAACTTTCATTGCCTGTGGTTGTGGCCGTAGGGTAAGCTTCCTTGTAGATTCTATAATGGTGGCAGAACTATTC TGAAGAGATTGAGTTCCACCAATATGCAAGCTATAATGGTGCTATTTAAGAAGCTTTTTGTTTTTTAATAGGACATCCGT AGCCAGAGCTGTAGCAATTATGCGTGAAAAATTGTTGAGAGACTGCAGAGATTTTATATTAATTCCAGTGTTGTCCAATA GTGGATATTGCGGCGATATTGCGCTTTAGCGTAGCGCTCTGAGGACTCGCCGCTATCCGTTATTTTCCGCTCTCCGAGGG CTCGCCATAGCAGATTTTTGGCTTTCCGCTATTTTCCAGGATCTGCGATTAACAGCATTGATCATTCATATACCAAAGCT TTGGCGAACCCTTGTGAGAATGTTTTCCTTTTGAGCATGTGCGTCTGTCTTGTTTATTGGACTTCCTTTAAAAGAAATTT GGGAATAGATCTATGGATTTGCATGTTGCTTGGGAGTTGGGACTTGTGAAGCTTGGTTCAATTTCAATCTTCGATGGTGG ATTCTAGTGCATGTTTGTTACTTAGCTTTCTGCTTTGTGTACTATGATCTGTTCAGTGCTCAGTTATTATGATTTGCTGA GGTTTTTGAGATGGCAGTCCTTAATGCTTATGTGGAAGTTTGTTCCATTCTCTTGTTCCATTTTGTTTACCATGGTACTT GTCAATCTGCAGGGATTGAAATTGATGAGGAGGAGCTTGCTCGCTTTGTGGAGCATGTTGATAAGGATAATAATGGAATT ATCACTTTTGAAGAATGGAGAGATTTTCTTCTGCTTTATCCTCATGAAGCCACTATTGAAAATATATATCAGCATTGGGA GAGGGTGTGCCTTGTAGACATCGGAGAACAAGCTGTCATTCCTGAAGGCATCAGCAAGCATGTGCACAGGAGCAGATATT TTATTGCAGGAGGGGTAGCAGGAGCTGCTTCTCGCACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGATCTTACAAGTT CAGACCGGAAATGCTTCTATTATGCCAGCAGTGATGAAGATATGGCAACGAGATGGTTTGTTAGGGTTTTTCCGAGGTAA TGGATTGAATGTTGTGAAGGTTGCTCCAGAGAGTGCCATCAAGTTTTATGCTTATGAAATGATTAAAAATGTAATCGGAG ATGGTCAAGGGAACAAGTCAGATATCGGTACTGCTGGAAGACTTTTTGCAGGTGGTATGGCTGGTGCTATTGCACAGATT GCTATCTATCCACTGGATCTTGTCAAAACTAGGTTACAGACTTGTGTTCCTGAAGGTGGAAGGGTTCCTAAGTTGCGCAC ACTTACAAGGGATATATGGGTCCATGAGGGACCTCGGGCTTTCTATAGAGGGCTTGTTCCATCTCTTCTTGGTATGATTC CTTATGCAGGCATTGATCTCACTGCCTATGACACCTTGAAAGATATATCCAAAACATATATTCTTTATGACCGCGGTATG ATATTACTGCAACTACATTATCTCTTGAACTTGCTGATTTTATTTTGTTCTAACAGCTTATGCTTTTTACACTGATAGAG TATTCAACATTTGAAATTTAAACTTTCCATTATTTTTCTCCTTCATAGAAGAACCTGGTGCTCTGATACAACTCGGATGT GGGACAATTTCAGGAGCTCTTGGAGCTACATGTGTCTATCCACTGCAGGTTATTCGTACAAGGTATAATGTTGTGCCAGA AGTGATGTTTTTCTCTGCACTCCTTGAGTTGGGGATGGTATCAGTTTTGTTCTTCTTAGCTAGTTTTCTAATTGATATTC TATGCTGACGTTACATTATCATGTTTCTCAGACTTCAGGCTCAACCTACGAACACATCTAGTGGTGACAGAGGAATGTCT GATGTTTTTTGGAAAACTCTCAAGACTGAAGGCTTTGGAGGTTTCTACAAGGGACTCATTCCAAATCTCCTCAAAGTTGT GCCAGCTGCAAGCATTACCTATATGGTTTATGAAAGTATGAAGAAGAAACTAGATCTTAAGTAG
CDS sequence (LotjaGi4g1v0417200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGGTGCAGGCCAAGCCATGGACCATGTGGGGTTTCCCAAGGCGAAATCCACGGCGGCGCCGACGGCGGCTCAGGG CAAGAAAACCGGTCCGGTTTCGATGGATCATGTTCTTCTGGCTTTGCGTGAGACCAAGGAAGAGAGGGATCTTAGAATTC GGAGTCTCTTCAATTTCTTCGACTCTGCTAACAAAGGCTACTTGGACTATGCTCACATTGAAACGGGTTTATCTGCACTG CAGATACCCCCTGAGTATAAGTATGCTAAGGAACTCTTCAAGGTTTGTGATGCTGATAGGGATGGCAGGGTAGATTACCA TGATTTCAGGCGCTATATGGATGACAAGGAGCTTGAGCTTTACCGCATTTTTCAAGCTATTGATGTGGAGCACAGTGGCT GCATTCTCCCTGAAGAGCTTTGGGATGCACTTGTCAAGGCTGGGATTGAAATTGATGAGGAGGAGCTTGCTCGCTTTGTG GAGCATGTTGATAAGGATAATAATGGAATTATCACTTTTGAAGAATGGAGAGATTTTCTTCTGCTTTATCCTCATGAAGC CACTATTGAAAATATATATCAGCATTGGGAGAGGGTGTGCCTTGTAGACATCGGAGAACAAGCTGTCATTCCTGAAGGCA TCAGCAAGCATGTGCACAGGAGCAGATATTTTATTGCAGGAGGGGTAGCAGGAGCTGCTTCTCGCACAGCAACTGCTCCT CTTGATCGTCTAAAGGTGATCTTACAAGTTCAGACCGGAAATGCTTCTATTATGCCAGCAGTGATGAAGATATGGCAACG AGATGGTTTGTTAGGGTTTTTCCGAGGTAATGGATTGAATGTTGTGAAGGTTGCTCCAGAGAGTGCCATCAAGTTTTATG CTTATGAAATGATTAAAAATGTAATCGGAGATGGTCAAGGGAACAAGTCAGATATCGGTACTGCTGGAAGACTTTTTGCA GGTGGTATGGCTGGTGCTATTGCACAGATTGCTATCTATCCACTGGATCTTGTCAAAACTAGGTTACAGACTTGTGTTCC TGAAGGTGGAAGGGTTCCTAAGTTGCGCACACTTACAAGGGATATATGGGTCCATGAGGGACCTCGGGCTTTCTATAGAG GGCTTGTTCCATCTCTTCTTGGTATGATTCCTTATGCAGGCATTGATCTCACTGCCTATGACACCTTGAAAGATATATCC AAAACATATATTCTTTATGACCGCGAACCTGGTGCTCTGATACAACTCGGATGTGGGACAATTTCAGGAGCTCTTGGAGC TACATGTGTCTATCCACTGCAGGTTATTCGTACAAGACTTCAGGCTCAACCTACGAACACATCTAGTGGTGACAGAGGAA TGTCTGATGTTTTTTGGAAAACTCTCAAGACTGAAGGCTTTGGAGGTTTCTACAAGGGACTCATTCCAAATCTCCTCAAA GTTGTGCCAGCTGCAAGCATTACCTATATGGTTTATGAAAGTATGAAGAAGAAACTAGATCTTAAGTAG
Protein sequence (LotjaGi4g1v0417200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGAGQAMDHVGFPKAKSTAAPTAAQGKKTGPVSMDHVLLALRETKEERDLRIRSLFNFFDSANKGYLDYAHIETGLSAL QIPPEYKYAKELFKVCDADRDGRVDYHDFRRYMDDKELELYRIFQAIDVEHSGCILPEELWDALVKAGIEIDEEELARFV EHVDKDNNGIITFEEWRDFLLLYPHEATIENIYQHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGVAGAASRTATAP LDRLKVILQVQTGNASIMPAVMKIWQRDGLLGFFRGNGLNVVKVAPESAIKFYAYEMIKNVIGDGQGNKSDIGTAGRLFA GGMAGAIAQIAIYPLDLVKTRLQTCVPEGGRVPKLRTLTRDIWVHEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDIS KTYILYDREPGALIQLGCGTISGALGATCVYPLQVIRTRLQAQPTNTSSGDRGMSDVFWKTLKTEGFGGFYKGLIPNLLK VVPAASITYMVYESMKKKLDLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 119 | 114 | 3.3E-14 | – | |
| PANTHER | 34 | 501 | 468 | 4.0E-248 | – | |
| PANTHER | 34 | 501 | 468 | 4.0E-248 | – | |
| SUPERFAMILY | 38 | 217 | 180 | 5.31E-36 | ||
| ProSiteProfiles | 48 | 83 | 36 | 8.627 | ||
| CDD | 52 | 181 | 130 | 6.12563E-14 | – | |
| SMART | 52 | 80 | 29 | 15.0 | ||
| ProSiteProfiles | 84 | 119 | 36 | 12.17 | ||
| SMART | 88 | 116 | 29 | 0.0045 | ||
| Pfam | 90 | 115 | 26 | 0.019 | – | |
| ProSitePatterns | 97 | 109 | 13 | - | ||
| SMART | 119 | 147 | 29 | 9.3 | ||
| Pfam | 119 | 177 | 59 | 3.9E-8 | ||
| ProSiteProfiles | 120 | 150 | 31 | 8.404 | ||
| Gene3D | 131 | 206 | 76 | 1.5E-16 | – | |
| ProSiteProfiles | 151 | 186 | 36 | 13.174 | ||
| SMART | 155 | 183 | 29 | 0.94 | ||
| ProSitePatterns | 164 | 176 | 13 | - | ||
| Gene3D | 215 | 501 | 287 | 4.3E-90 | ||
| SUPERFAMILY | 217 | 493 | 277 | 9.81E-77 | ||
| ProSiteProfiles | 218 | 301 | 84 | 18.995 | ||
| Pfam | 221 | 303 | 83 | 2.4E-22 | ||
| PRINTS | 223 | 236 | 14 | 3.2E-29 | ||
| PRINTS | 236 | 250 | 15 | 3.2E-29 | ||
| PRINTS | 276 | 296 | 21 | 3.2E-29 | ||
| Pfam | 311 | 399 | 89 | 5.6E-22 | ||
| ProSiteProfiles | 312 | 399 | 88 | 20.754 | ||
| PRINTS | 327 | 345 | 19 | 3.2E-29 | ||
| PRINTS | 372 | 390 | 19 | 3.2E-29 | ||
| ProSiteProfiles | 410 | 498 | 89 | 24.251 | ||
| Pfam | 413 | 499 | 87 | 1.1E-24 | ||
| PRINTS | 419 | 441 | 23 | 3.2E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP transmembrane transporter activity | Enables the transfer of ATP, adenosine triphosphate, from one side of a membrane to the other. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0417200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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