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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0418300 |
| Transcript ID | LotjaGi4g1v0418300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (Reverse transcriptase); Polynucleotidyl transferase, Ribonuclease H fold; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|F4NCI4|F4NCI4_BETVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0418300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79376265..79378815) extracted from Lotus japonicus Gifu genome v1.2.
CACACCCCTTGCCCCTTTACAAAGAAAATAAGATTCCTTCCTCTTATTAGGCTCTAATTATAAGACAACCAACATCAAAC ACCCTAAGATTAGGATCTTACCATACCCACTATAACGAAACACAACGACTAGACCTCACATCACCCACCTTCTAACACAT AAAACCACCAAATCAATATAATAAGTTGGCTTGAATATTTTGCACCAGTCCTGGATTTACCTCCTCATTAAAACCATCAT AGGCCATTAATCTTAATCCCTCTCCCCAAGAGGCCAAGACTCATGCTAAGTTTGATTTTTTATTTATTGTTGCATGTGTA CTAGGTAGAAGATTGACTGAAGTTCTATCAACAAAAGAGATTTTACTTAATTTTTTAGGGAGAAAGTATTTGAGGAATGC ATTTAAAAAGAAAAGAAAAGAGAGATTGAAATAAAAGAGTAAGAAATAAGAGTTATGATGAGTAATGTGATGAAAAAGAA AAAGAGAAAAGAATCAATTTTGACAAATCTGAACTCTCCCTAAGCCGAAATGTGCCTAGTACCTGTATTATCGAGTTAGA ACAACTCCTTGGTGTTAAGGCGGTGGAGAGACATGAGAAGTACTTGGGCCTCCCGACAATTGTAGGGAGATAAAAAACAC AAGTATTCAACTTTGTTCGAGATAGAATCTGGAAAAAGCTCAAAGGATGGAAGGAAAAGACCTTGTCAAGAGCGGGAAGA GGCGTTCTAATCAAATCTGTGGCTCAAGCTATCCCCTCTTATGTTATGGGACTATTCCTACTCCCCTCTACACTATGTGC CCAAATTGAGAGGATGATAAATAGCTTCTATTGGGGAGGCAGTTCTGAAAAGAGGAAAATGAACTGGATCAAGTGGGATT CCCTAGCAACACCGAGAAGCTTGGGAGGGCTAGGCTTCAAATCTTTCCATGCGTTCAACAAAGCAATGTTGGGCAAACAA TGGTTGAGATTAATGAAAAGGGGAGACTCCCTTATGGCAAGAGTGCTAAAGGCCCGCTACTACCCGAGAGATGAGCTAGA GAATGCGAGAAGAGGGACCAACTCAAGCTTCTTGTGGAAAAGCATCTTTGCAGCCAAAGACATGATAAAAGATGGGAGCA TGTGGAAGGTTGGTGATGGGACCAAAATTAACATCTGGTCTGATGCTTGGATACCAAGTACACACAGGGGAAAAGTCATG ACAACAAAGCCAAATGGATGCACAACCTTGAGGGTAAGCCAACTTATGGAGAACACGGGCAGGAGCTGGAACCAGCAGCT GATCAGAGAAACTTTCCTCCCCATAGACGTGGATAGAATCCTACAAATCCCTCTGAACCCTGAGAATAGCAGCGACAAAG TCATCTGGAAGGAAAGTATCAATGGCGAATACAAGGTCAAAGAGGGATACAAACTCCTGAAGGAGAGGCGACAGGGAAGG AATGAAGCTGAACCATCAAACTCAAGAGAAAACCAGCTATGGAAAAAAATCTGGGCTATAGAAGTGGTACCAAGCTGTAA AGAATTCGCCTGGAGAGCGTGCAAGGAGGTGCTACCTGTGTATGAAAATCTGAAACGCAGAGGTATTGATCTAGATACAA CATGCCCATGCTGTGGTGAAGCTGAGGAAACTACGACTCACACCCTCCTAACTTGTAGTGGGACATGTAGAATCTGGTTC AGCTCCCATCTTGGCATCCAAATTTCTCAAGACATGGACAACAATTTCAAGGGATGGCTTGAGAGAATTCTCGAGCACCC CTGTCCTGAGATCATGGCTGATGTGCTCAATCTTATTTGGACAATATGGAAAAGAAGGAACACATGGGTCTTTGAGAAGC AGCTGTGGGACATCGAGCAAACCCTGGCAAAGGCAGCAAGGAGCTGCATCAGACAAGTGGAAAAGCAAGACGATTTGCTC CAAGAGTCATCCCCCTCAACTTGGATCCCACCTGAAGGAGAGAAGTATAAACTGAATGTGGACGCAGCAAATAATCCCTC TGGCTCGGGCTTTGGTGCAATCATAAGAAATGGAAAAGGGGAGACTTTAGCAGCTGCAACCCGAATCTGGTGTGCCCAAG AAGACCCTACAATGGCTGAAGCTTTAGCTGCAAAATGGGCACTTGGCTGGGCAAAGGAGATAGGCTTCAGACAACTATCC ATCGAAACAGATTCTCTAATACTAGTGCAGCAATGGAAAAACACTAGCTTAGGGGATTCATATTTGCATGATGTTATTAG AAATTGTAAGTCTTTAGCTTTGTTTTTTAATTCTTTCTCTGTTTCACATGTCAAGAGGTCAGGCAACCGGGTTGCTGATT TCCTTGCACATCTTGCTTTCAGTTTTCATGATCAATGTTGGATTGAGGAAGACCCTCCAGGGGCCTCAAATTTGATCACT AGTGATGTATCTCCAGCAGTTTCATCTGCTTCTTCTTGAATGAGAAACAGAAGTTGAACTTCAAAAAAAAGAAGGAGCAC CGTTGACTCCAATTCATACCACATGTTTAGATAGTCTAATTTGATTACATAGGATGTAGATGAAAATTTTC
CDS sequence (LotjaGi4g1v0418300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACTATTCCTACTCCCCTCTACACTATGTGCCCAAATTGAGAGGATGATAAATAGCTTCTATTGGGGAGGCAGTTC TGAAAAGAGGAAAATGAACTGGATCAAGTGGGATTCCCTAGCAACACCGAGAAGCTTGGGAGGGCTAGGCTTCAAATCTT TCCATGCGTTCAACAAAGCAATGTTGGGCAAACAATGGTTGAGATTAATGAAAAGGGGAGACTCCCTTATGGCAAGAGTG CTAAAGGCCCGCTACTACCCGAGAGATGAGCTAGAGAATGCGAGAAGAGGGACCAACTCAAGCTTCTTGTGGAAAAGCAT CTTTGCAGCCAAAGACATGATAAAAGATGGGAGCATGTGGAAGGTTGGTGATGGGACCAAAATTAACATCTGGTCTGATG CTTGGATACCAAGTACACACAGGGGAAAAGTCATGACAACAAAGCCAAATGGATGCACAACCTTGAGGGTAAGCCAACTT ATGGAGAACACGGGCAGGAGCTGGAACCAGCAGCTGATCAGAGAAACTTTCCTCCCCATAGACGTGGATAGAATCCTACA AATCCCTCTGAACCCTGAGAATAGCAGCGACAAAGTCATCTGGAAGGAAAGTATCAATGGCGAATACAAGGTCAAAGAGG GATACAAACTCCTGAAGGAGAGGCGACAGGGAAGGAATGAAGCTGAACCATCAAACTCAAGAGAAAACCAGCTATGGAAA AAAATCTGGGCTATAGAAGTGGTACCAAGCTGTAAAGAATTCGCCTGGAGAGCGTGCAAGGAGGTGCTACCTGTGTATGA AAATCTGAAACGCAGAGGTATTGATCTAGATACAACATGCCCATGCTGTGGTGAAGCTGAGGAAACTACGACTCACACCC TCCTAACTTGTAGTGGGACATGTAGAATCTGGTTCAGCTCCCATCTTGGCATCCAAATTTCTCAAGACATGGACAACAAT TTCAAGGGATGGCTTGAGAGAATTCTCGAGCACCCCTGTCCTGAGATCATGGCTGATGTGCTCAATCTTATTTGGACAAT ATGGAAAAGAAGGAACACATGGGTCTTTGAGAAGCAGCTGTGGGACATCGAGCAAACCCTGGCAAAGGCAGCAAGGAGCT GCATCAGACAAGTGGAAAAGCAAGACGATTTGCTCCAAGAGTCATCCCCCTCAACTTGGATCCCACCTGAAGGAGAGAAG TATAAACTGAATGTGGACGCAGCAAATAATCCCTCTGGCTCGGGCTTTGGTGCAATCATAAGAAATGGAAAAGGGGAGAC TTTAGCAGCTGCAACCCGAATCTGGTGTGCCCAAGAAGACCCTACAATGGCTGAAGCTTTAGCTGCAAAATGGGCACTTG GCTGGGCAAAGGAGATAGGCTTCAGACAACTATCCATCGAAACAGATTCTCTAATACTAGTGCAGCAATGGAAAAACACT AGCTTAGGGGATTCATATTTGCATGATGTTATTAGAAATTGTAAGTCTTTAGCTTTGTTTTTTAATTCTTTCTCTGTTTC ACATGTCAAGAGGTCAGGCAACCGGGTTGCTGATTTCCTTGCACATCTTGCTTTCAGTTTTCATGATCAATGTTGGATTG AGGAAGACCCTCCAGGGGCCTCAAATTTGATCACTAGTGATGTATCTCCAGCAGTTTCATCTGCTTCTTCTTGA
Protein sequence (LotjaGi4g1v0418300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLFLLPSTLCAQIERMINSFYWGGSSEKRKMNWIKWDSLATPRSLGGLGFKSFHAFNKAMLGKQWLRLMKRGDSLMARV LKARYYPRDELENARRGTNSSFLWKSIFAAKDMIKDGSMWKVGDGTKINIWSDAWIPSTHRGKVMTTKPNGCTTLRVSQL MENTGRSWNQQLIRETFLPIDVDRILQIPLNPENSSDKVIWKESINGEYKVKEGYKLLKERRQGRNEAEPSNSRENQLWK KIWAIEVVPSCKEFAWRACKEVLPVYENLKRRGIDLDTTCPCCGEAEETTTHTLLTCSGTCRIWFSSHLGIQISQDMDNN FKGWLERILEHPCPEIMADVLNLIWTIWKRRNTWVFEKQLWDIEQTLAKAARSCIRQVEKQDDLLQESSPSTWIPPEGEK YKLNVDAANNPSGSGFGAIIRNGKGETLAAATRIWCAQEDPTMAEALAAKWALGWAKEIGFRQLSIETDSLILVQQWKNT SLGDSYLHDVIRNCKSLALFFNSFSVSHVKRSGNRVADFLAHLAFSFHDQCWIEEDPPGASNLITSDVSPAVSSASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 551 | 551 | 2.7E-132 | – | |
| Pfam | 209 | 304 | 96 | 2.9E-19 | ||
| ProSiteProfiles | 397 | 526 | 130 | 8.655 | ||
| Gene3D | 399 | 529 | 131 | 6.5E-19 | ||
| SUPERFAMILY | 401 | 527 | 127 | 5.44E-15 | ||
| CDD | 403 | 522 | 120 | 1.4339E-24 | – | |
| Pfam | 404 | 524 | 121 | 6.0E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi4g1v0418300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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