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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0418400 |
| Transcript ID | LotjaGi4g1v0418400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal-associated protein; TAIR: AT5G50740.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q9C5D3|HIP7_ARATH Heavy metal-associated isoprenylated plant protein 7; TrEMBL-Plants: tr|A0A072TUA8|A0A072TUA8_MEDTR Heavy metal-associated domain protein; Found in the gene: LotjaGi4g1v0418400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79392818..79394785) extracted from Lotus japonicus Gifu genome v1.2.
GTAACAATGTACCTACATTGCACGCACACACTACTGCACAAATATTTACGGCAAAAGCATTCAGCCACAGCAGCAGCCAT AGCAGTAGCAGCTGCAGCATTACCAACCAAGCTTATCTCTCTCTCAGCAAAGCCAATGGGAGAGGTATCCATCACTTCTT CTTCTTCTTCTTTTTTCTTCCATGGTTGTCATCTTTATTCATTTGGGTTTTGATGTTTTGCTTTCATTTTTTCTGATTAG GAGGAGAAGAAACCAGAGGAGAAAAAACCAGAGGAACAACCCAACAAGGGAGAAGAGAAGAAGGAGGAAAAACCGGCGGA GGAGAAGAAACCGGAGGAACCAAGCAAGGATCAAGCTCCACCGCCAGAAATTGTGCTGAGAGTGTTCATGCATTGCGAGG GTTGTGCCCGGAAGGTTCGCCGCTCTCTCAAGGGATTCCCAGGTGAGTTTTTTGTTTCCCCTGTTTTTGTTTTTTGTTTG ATTCTGTTTATTTTTTGTGTGTCTGAATTTGTTTGATTTCGTTTCAGGGGTTGAAGATGTGATCACTGATTGCAAGTCTC ACAAGGTGGTTGTGAAAGGAGAGAAAGCGGATCCGGTGAAGGTTCTGGAGAGAGTGCAGAGGAAGAGCCACAGACAGGTT GAGCTTCTCTCTCCGATCCCAAAGCCACCGGCAGAGGAGGAGAAAAAGCCAGAGGAGCCTGAAAAGCCTAAGCCAGAGGA GAAGAAAGAAGAGGTTCTTTTCAATTTCATCTCTTTTTCCTCTTGATTTTCTCTGAATCTGTTGATCTCATTGGCCTGAC CAGTTTTTTGTTTTTCATGGTGCAGCCTCAGATCACAATAGCAGTTCTGAAAGTTCACATGCATTGTGAAGCTTGTTCAC AGGAAATCAAGAGACGCATAGAGAGAATCAAAGGTTTGTTTTTCAATTCAGGATCTGTGGGTTTTATTCTGAAAGTGTGA TTCACTTGATTAGAATAATGAAGTTTCATTTTCATGTCAAAATCAGCTTTGCACTTTGATTCCCTTATAAGTGATTCTTA ATTCCATTCCTTCTAATTCAACTCATTAAAATAATTGAAGTCCTTGGATTCCAGTGTAAGTGGTCCTGTTCAGGTCAAAT TTTGTATCTTAAAGCCATTTTAAAATTGGGTTTAGTATCAATTATAAAACCAATCATGCCCTGTTATGATTGTGTTAATT GCTGAGTGATTTTGGTTCTAACTTTGAGTGTCTTATGCAGGAGTGGAATCAGCTGAGCCAGATCTTAAGAACTCACTGGT GAGTGTGAAGGGAGTGTTTGAGACAGAGAAGCTAGTGGAGTATGTGTACAAGAGGACTGGGAAGCAGGCAGTGATAGTGA AGAGTGAGCCAGAGAAGAAGGAGGAAGCAAAAGAGGCCAAAGAGGAGAAGAAAGGTGATGAGGAAAAGAAGGGTGATGAT GCTGCTGGTGGTGGGGGTGCAGAAGAGAACAAAGAGAAGAAAGAAGGGGAAGGAGAGGCCAAAACAGGAGAAGGGGAAAC TACTACAGAAGAAACAAAAGTGGTGGAGATGAAGAAGAGTGAGTACTATTTCAACCCACCAAGGTATGGAATGGAGTTCT ATGCAGGAGGAGGAGGATATCCTGGGCCAGCATACCCACCCCCACCCCAGATCTTCAGTGATGAGAACCCCAATGCCTGC TCTGTCATGTAAAAATTCAGGAATGTCAGGGGTAATATTGGAATTTGGGAGGACTGTCAAATTTGAGTGATTTCCATATC CTGGGTTTCATGATGATGGGCAGTCACTCACTCTGTACTTTCTTTTCCTGCAGTATAAAAAAAGTATAAATCTACAGATA AGCTGTAGAGTTTTGTAATGCTTGTACTTTTTTAAGAAAAACAAAAATTAATTGTCATATATGAACATGTATAATATAAG TAATTACAGTTTTGTTTAAATTCACTTTCTATTGCTATTGCTGTTTAA
CDS sequence (LotjaGi4g1v0418400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACCTACATTGCACGCACACACTACTGCACAAATATTTACGGCAAAAGCATTCAGCCACAGCAGCAGCCATAGCAGT AGCAGCTGCAGCATTACCAACCAAGCTTATCTCTCTCTCAGCAAAGCCAATGGGAGAGGAGGAGAAGAAACCAGAGGAGA AAAAACCAGAGGAACAACCCAACAAGGGAGAAGAGAAGAAGGAGGAAAAACCGGCGGAGGAGAAGAAACCGGAGGAACCA AGCAAGGATCAAGCTCCACCGCCAGAAATTGTGCTGAGAGTGTTCATGCATTGCGAGGGTTGTGCCCGGAAGGTTCGCCG CTCTCTCAAGGGATTCCCAGGGGTTGAAGATGTGATCACTGATTGCAAGTCTCACAAGGTGGTTGTGAAAGGAGAGAAAG CGGATCCGGTGAAGGTTCTGGAGAGAGTGCAGAGGAAGAGCCACAGACAGGTTGAGCTTCTCTCTCCGATCCCAAAGCCA CCGGCAGAGGAGGAGAAAAAGCCAGAGGAGCCTGAAAAGCCTAAGCCAGAGGAGAAGAAAGAAGAGCCTCAGATCACAAT AGCAGTTCTGAAAGTTCACATGCATTGTGAAGCTTGTTCACAGGAAATCAAGAGACGCATAGAGAGAATCAAAGGAGTGG AATCAGCTGAGCCAGATCTTAAGAACTCACTGGTGAGTGTGAAGGGAGTGTTTGAGACAGAGAAGCTAGTGGAGTATGTG TACAAGAGGACTGGGAAGCAGGCAGTGATAGTGAAGAGTGAGCCAGAGAAGAAGGAGGAAGCAAAAGAGGCCAAAGAGGA GAAGAAAGGTGATGAGGAAAAGAAGGGTGATGATGCTGCTGGTGGTGGGGGTGCAGAAGAGAACAAAGAGAAGAAAGAAG GGGAAGGAGAGGCCAAAACAGGAGAAGGGGAAACTACTACAGAAGAAACAAAAGTGGTGGAGATGAAGAAGAGTGAGTAC TATTTCAACCCACCAAGGTATGGAATGGAGTTCTATGCAGGAGGAGGAGGATATCCTGGGCCAGCATACCCACCCCCACC CCAGATCTTCAGTGATGAGAACCCCAATGCCTGCTCTGTCATGTAA
Protein sequence (LotjaGi4g1v0418400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLHCTHTLLHKYLRQKHSATAAAIAVAAAALPTKLISLSAKPMGEEEKKPEEKKPEEQPNKGEEKKEEKPAEEKKPEEP SKDQAPPPEIVLRVFMHCEGCARKVRRSLKGFPGVEDVITDCKSHKVVVKGEKADPVKVLERVQRKSHRQVELLSPIPKP PAEEEKKPEEPEKPKPEEKKEEPQITIAVLKVHMHCEACSQEIKRRIERIKGVESAEPDLKNSLVSVKGVFETEKLVEYV YKRTGKQAVIVKSEPEKKEEAKEAKEEKKGDEEKKGDDAAGGGGAEENKEKKEGEGEAKTGEGETTTEETKVVEMKKSEY YFNPPRYGMEFYAGGGGYPGPAYPPPPQIFSDENPNACSVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| MobiDBLite | 41 | 88 | 48 | - | – | |
| MobiDBLite | 42 | 83 | 42 | - | – | |
| PANTHER | 44 | 361 | 318 | 1.4E-125 | – | |
| PANTHER | 44 | 361 | 318 | 1.4E-125 | – | |
| Gene3D | 87 | 155 | 69 | 1.8E-16 | – | |
| Pfam | 91 | 145 | 55 | 6.8E-13 | ||
| SUPERFAMILY | 92 | 146 | 55 | 1.44E-11 | ||
| CDD | 96 | 152 | 57 | 4.10934E-12 | ||
| ProSiteProfiles | 96 | 152 | 57 | 9.315 | ||
| MobiDBLite | 140 | 184 | 45 | - | – | |
| MobiDBLite | 159 | 184 | 26 | - | – | |
| Gene3D | 184 | 251 | 68 | 1.7E-15 | – | |
| SUPERFAMILY | 185 | 250 | 66 | 2.36E-11 | ||
| CDD | 189 | 248 | 60 | 1.4569E-10 | ||
| Pfam | 190 | 245 | 56 | 3.4E-11 | ||
| ProSiteProfiles | 194 | 250 | 57 | 9.921 | ||
| MobiDBLite | 253 | 316 | 64 | - | – | |
| Coils | 254 | 274 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi4g1v0418400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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