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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0418900 |
| Transcript ID | LotjaGi4g1v0418900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RecQ-mediated genome instability protein 1; TAIR: AT5G63540.1 recQ-mediated instability protein (DUF1767); Swiss-Prot: sp|Q7XRV0|RMI1_ORYSJ RecQ-mediated genome instability protein 1; TrEMBL-Plants: tr|I1KP59|I1KP59_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0418900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79441537..79446632) extracted from Lotus japonicus Gifu genome v1.2.
GAAGGAAGGAGGGAAACACACACAATCACATTTTCGAAAATGCACATCCGCCGTCTCCAGCTCGACTTCGACTCCGACGA AGAGCAAGCCGATGTTCCGCCTCAGCCACACAAACCCACTCATCAAGCTCCGAACCCTACCAATTCCCCCCCGGAACCAG TTATAATCTCCGATGAGGACTTCGTCGACGTCTCCGATGACCCATCGCCGCCATCCCCACCACCTGCGCCGGTTCCCCAA CCTCACGCTCCCGGCTGTCCCGTCAGCTATTTTCTCCGCCGCCTTGGATTGGGCCTGAAGCGAGAGTGGCTGGCTGATTG TCTTCGCGCGCTCCAAGGCTCCGTGAGGGGATTCGAAGGGCTCGATGTGGCCGCACATGCCAAGCTTTGTTTCGAGCAGT TTCTGTTTGCTGATATGAACTTCTGTGGTGGCGGCGTGCTTCCTGCGAATGTGGATTCCATGCATCTCGATGTTCTCCCT GGTCCCTATGTATTGCAGGTAAATTGGCTATATTGTTCAGATTATCTGCATCTTAGAAATGTAGTGTAGCCCCATTATTG TGATAAAATGTTCAATTTAAGCACAGGTTAGATGTTTTGCCTAATTGAGCTTCAGTTTTGGAAGTTCTAGTACTATGTCA TTGATCAATTATCCCCAAAAATTTACACATGAATGTTTTTATAGTATATTTCTATTGTTGCGCTTCTCGGATTTTCAATA GTTTGGGCTCGACGTTTGCTGCGATAACCGGATTGGAATTTAGTGTTAATGTGTTTTAGTAACAACATAGTTTCAATTGA ATTTGAGCCTACCTTTGATGCTTTCTCAGAAAGAGCATATAGCATCTTAGCTGTCCCCGATGGTTAGCTCAAGTGGTAAG AGCTAGGGAACATAAGGGTTGGGTGGGATGAAGGGTGAAGGGTCCATGGTTCGAACCCTGAGGAGGGACTAGCTTACTAA CATTACTAACAACTAACAACTAACATTTGCCTTATGAAAAAAAATATAGCATCTTAGGTTGCGACTGCTAGGGTCTAAAT TATGCTCTTGGATCTGCTAAAAACATGGTTTTGAGGATACTCAACTTAAAACCAGATGGGCACTTGAATGATGGAATGCG GGTCAAGCATTTTTGCTTAGATGGTTGCTGACATAGCATGTATTCTGTGCTGATAGCTTATTGCGATCAATTTCATTTGT GGAACCTGTTAATATCCTACCCATGTATTTTCATCAGGATATTCAAATAACTGTGGATTCATGGGGTTGCATTGACAGGT TGATGAAATACTCAATATGAGTTGTCCTCTACGAGGCAGATATCAGAAAGCCAATCCTGGAGTTAAAAGGTGCCTGAAGT TGTCAATGACTGATGGTGTTCAGAGAGTCTTTGGAATGGAATACAGGCCTATTCAAGCTCTTGACGTTTGTGCCCCTTCT GGTTTAAAGGTTTCTTTGGTTGCTCGAGCATCCTTTTCCTTTCTATTAATTTGAATACACATGCTGACATACATGGTGCA CTTCAGTAGAACACTTATTCATATAACCCTTGAAAGTGTTGCTGTTATTGTATAGTATCGATGTTTATGACTGTGATTTA GCAAAAAAAAAAAGGTATTTTTAATCCTTGGATTGCACACACCATTCCCAAAGTACACCTTAAAATTGTGGCCTTATGAA ATCAGTCAGTTTCTACATTTACTTCTAACCTTGCTCTCACTTGATTGCCTTGGCATATATTTCATTTAAACAGAGATGCA GTTAAATAATTCATAAACTGTACTGATTTAGATGTAATACTTCAAGTGGATTTAATGCTTTTAGCATCAAATGCTCAATC AATTACGTGGAAATCCATTCTTAATTATGCAATTTTCTTGTGGCCTTACTCTTTGTTTATCACCCATATGCTATTTATAT GAAATTTACAACTTATTTGCTTTGCTTATATTCCCTGTTCGTAAGTTTGAATTTGAGGTATCTATTTGATACCTGTAGGT TTCTATCTCTAATGTAAAGGTACGTCGTGGACTTTTGATGCTGGACCCTGAAACCGTTCAAATTAAAATTTTGGGGGGAT TAGTTGAGCAGCTGGATGCAGCACGACAGCGGTTGGTTAAGGAATTAAATAAGCCACCTAGGGGGACAAGGTACAAGTTA TTGCAATAGGATCATTCAGACTTGTATGTGCAATGGAAAGCTATATCTTAATATGGAAGCTAAATTAGTGCATAGTTTCC TGTTGTTTCTATGTTTCTTGCTCTCTTCTTCTATTATAATTTGTAAGTTTACTGTATCTATATATATACCTTGATTGGAT AGCCTTAATTATTTTCTCACGCAGAACCAAAAATGGAGTGCTTCCTCCTTTGTCTACTAGAGCAACTCTTGCTGCATGGC CTTCAAGTAGAGTTGATGATCCTGGGCACACTGCCCCGATGTTGCACAGTACCGATTCTGTCCACACAAACAACCAAGGT ACATCCTTATGTTGTAGATAAAAGTACATGCATGTTTGCATTCATGGGGCTGTATACCTATGGCATAACTAATCTCTTAG TTTTCTTGATTTTGTTCTCATCTGTTCTTCATGTAGCAACAGGTGCTGGCCTGAGCATGCCTCACACTGGTCACCGCTTA ACATCTGAAGATACTCTGCCCATGGGTGAACAAAATGCTGCTTCCAATTCAATACCTCACACGGTTTCAAATGCTGAGGC CAGGAATATGGATGTGCATAGGGGTACCTATCCTGTGTCCAGTGATAATTCTATGGGTAACCAGTTTCCTTCTAGTTTTG CAAGGGCTGAGGTGCATGTAGATACTCCTTATATCACTAGGCAAAATTCTGTTGGCAACCAGTCTTCTCATGCACACTCA AATGTTGCTGCGACACATGGAGATACTATTCATGTAACAAGAGAAAGTTCTGTGGCTACTATGTGCTCTCCTATTGCTGA AAATGTTGAGACTGACAAGTATAGAAACAGAATTCCTGTAACCACAATAACTGATAGTACTCCTCTGAGAGGATCCTCCT CTACTGTTTCAACAACTGATGATATCCTGATGGGTGATGCCAGTGACCATCCACTCATACTGTCCCCAGAACCTGGTAAT ATCATCAGGGAAAGTTCTGTTGGCAACCAATCTTCACACGTGCATTCAAATGTTGCAGTCGCAGACAAAGATAATGTTCA TGTAACATGGGAAAGTTCTGTGGCTACTAAGTGCTCCCCCATTGCTGAAAATGTTGTGACAAACCATGATAAAATTCCTG TAATTACAATTTCAGACAATGTTCCTCTAAGAGGATCCTCCGCTGTTTCAAACACTGACGATGTCCTGATGGTTGATGCT GCCAGTGACCATCCACTCATGATGTCTGGTGATCGAGAAGTTCCTTTTACATACTTAGCTAGTTTATCAGCCAAATGGGC TGCAATGAAAGAGAAATCTCGTCTGGTTCAGGGTAAAATTAAGGTAAAAAGATAAACCTATCTATTGCTCTCTCTCTTTG CGCATATATTAGTATCTGTATTCGAATTGCATTTATTGGCTCTTCAGTCAAAATGAGTGGTTGGAATAGCTAACTATAAA GTTCCTGGAGCAGAATCCACATATTGCTGTCACTCCTCTTCATATTAAGCTTCATATTGTTTTAGATTTGAGAATAAGGC ATTGATTGCTATGTCTATAGGGATATCGGTTCTTGAATAAAACTTACTTTCGAGCATGTCATAATTCTGCTACTGATATC TTGATAGTTTTGCAATCTTATACTTTTCATGAGTATAAAATATAAATGCATAATTCTTTTGCAGTGCTTTTTGACCGGTG TAAAAGGATTCCAGTATAAGAAAAGGACGACATATGAGCTTCAGGCATATGTAGATGATGGTAGCCTTATTTCTGAAATT ATCATTGATCATGATGTGAGTTTTCCCTAGAATTGAAGGTTTTATAATGTTGGATTTATCTTTTTACCATTCTATATTGA TCAACGGGAGAATTTTTTAGGTTGTACAAAAAGGAATTGGTTATTCTCCTCAGGAGGTCACTGCGGCTCTTTCTTCTACT GACATGAAAACAGTCCAAAACATGAAGGAGACAATGCGTAAATTCCAAGCTTTTTTGGCAAACTTTGAGGTAATAAAAAT ATTTCTTCTACTGCAAGTCAAATGCAGTTGTTAACTATGAGTGGTTGGCAACAAATTAATAGTTGTTTCATCATTCTTTT AGTTTACATCTTGTTTTTTTTTTTCTCTCTAGGGAATAATTCGAGTAGAATTCAATAGGAAATCTCCCATTCCACTTGCC CTAGAGATGAATCAAGGCTGTCCTCAATCTGATGCATGGTTACTCATGAGAAGGCTGAAGTCTCTTGACCCTGCACAAGT TCAAAATCATTCTCCTTTGGATCCAATTTATTTATCCCCGTAATTATCAGTTACCTGAACGGCTAAAATTTCATAATTTG GCTTAACAGAGTTGGGCTCAAAATTGCTACACCAACCAAACATAATTGAATGTCAGTATCTATTGCAGCCGTTGTATATT CAATTTGAGAATAAAACTATTGTCCACACTTCACCAAAAGCTCTTGCCACAAGATCCTTGCAGAACTAAGATGAGCTTAG AAATGTTGCTCTATGAGATGGCCTGATGTGAAGGTTCCAAGTTGAGCTTTGGCTGTCAAGAAAGCCATTTTGGTGTTCAG GTTCATCAAAACAAGGAATGATCTTCCCTTTAATCCAAGTTCAATGGAAGAAACATCGTGATTGATTGACCTTAAATGCC ACCATTACAGGATTAGCATGTGATAATTGTTGTCTGGGTTGTGCACTTCAGTATATCATGAATTATCAGCCTTTCATATT TTTTATGGTCATTTGTGTGACCATTTGAGGGTTATTTATAAGATGAGATATCTGTTTCTTCTGCTAGGATTGCTTGTACT TCAAGAATGCCTATAACAATTATTTGGCGATTTAATTTGAAATGTAAATTTTGGTGGTGATTTTAGCTTTGCTCAGATTT GTAGATTTTGATGTTACATTTTTGTAATACCTACCCAATCCAAGTTAATACCATTG
CDS sequence (LotjaGi4g1v0418900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACATCCGCCGTCTCCAGCTCGACTTCGACTCCGACGAAGAGCAAGCCGATGTTCCGCCTCAGCCACACAAACCCAC TCATCAAGCTCCGAACCCTACCAATTCCCCCCCGGAACCAGTTATAATCTCCGATGAGGACTTCGTCGACGTCTCCGATG ACCCATCGCCGCCATCCCCACCACCTGCGCCGGTTCCCCAACCTCACGCTCCCGGCTGTCCCGTCAGCTATTTTCTCCGC CGCCTTGGATTGGGCCTGAAGCGAGAGTGGCTGGCTGATTGTCTTCGCGCGCTCCAAGGCTCCGTGAGGGGATTCGAAGG GCTCGATGTGGCCGCACATGCCAAGCTTTGTTTCGAGCAGTTTCTGTTTGCTGATATGAACTTCTGTGGTGGCGGCGTGC TTCCTGCGAATGTGGATTCCATGCATCTCGATGTTCTCCCTGGTCCCTATGTATTGCAGGTTGATGAAATACTCAATATG AGTTGTCCTCTACGAGGCAGATATCAGAAAGCCAATCCTGGAGTTAAAAGGTGCCTGAAGTTGTCAATGACTGATGGTGT TCAGAGAGTCTTTGGAATGGAATACAGGCCTATTCAAGCTCTTGACGTTTGTGCCCCTTCTGGTTTAAAGGTTTCTATCT CTAATGTAAAGGTACGTCGTGGACTTTTGATGCTGGACCCTGAAACCGTTCAAATTAAAATTTTGGGGGGATTAGTTGAG CAGCTGGATGCAGCACGACAGCGGTTGGTTAAGGAATTAAATAAGCCACCTAGGGGGACAAGAACCAAAAATGGAGTGCT TCCTCCTTTGTCTACTAGAGCAACTCTTGCTGCATGGCCTTCAAGTAGAGTTGATGATCCTGGGCACACTGCCCCGATGT TGCACAGTACCGATTCTGTCCACACAAACAACCAAGCAACAGGTGCTGGCCTGAGCATGCCTCACACTGGTCACCGCTTA ACATCTGAAGATACTCTGCCCATGGGTGAACAAAATGCTGCTTCCAATTCAATACCTCACACGGTTTCAAATGCTGAGGC CAGGAATATGGATGTGCATAGGGGTACCTATCCTGTGTCCAGTGATAATTCTATGGGTAACCAGTTTCCTTCTAGTTTTG CAAGGGCTGAGGTGCATGTAGATACTCCTTATATCACTAGGCAAAATTCTGTTGGCAACCAGTCTTCTCATGCACACTCA AATGTTGCTGCGACACATGGAGATACTATTCATGTAACAAGAGAAAGTTCTGTGGCTACTATGTGCTCTCCTATTGCTGA AAATGTTGAGACTGACAAGTATAGAAACAGAATTCCTGTAACCACAATAACTGATAGTACTCCTCTGAGAGGATCCTCCT CTACTGTTTCAACAACTGATGATATCCTGATGGGTGATGCCAGTGACCATCCACTCATACTGTCCCCAGAACCTGGTAAT ATCATCAGGGAAAGTTCTGTTGGCAACCAATCTTCACACGTGCATTCAAATGTTGCAGTCGCAGACAAAGATAATGTTCA TGTAACATGGGAAAGTTCTGTGGCTACTAAGTGCTCCCCCATTGCTGAAAATGTTGTGACAAACCATGATAAAATTCCTG TAATTACAATTTCAGACAATGTTCCTCTAAGAGGATCCTCCGCTGTTTCAAACACTGACGATGTCCTGATGGTTGATGCT GCCAGTGACCATCCACTCATGATGTCTGGTGATCGAGAAGTTCCTTTTACATACTTAGCTAGTTTATCAGCCAAATGGGC TGCAATGAAAGAGAAATCTCGTCTGGTTCAGGGTAAAATTAAGTGCTTTTTGACCGGTGTAAAAGGATTCCAGTATAAGA AAAGGACGACATATGAGCTTCAGGCATATGTAGATGATGGTAGCCTTATTTCTGAAATTATCATTGATCATGATGTTGTA CAAAAAGGAATTGGTTATTCTCCTCAGGAGGTCACTGCGGCTCTTTCTTCTACTGACATGAAAACAGTCCAAAACATGAA GGAGACAATGCGTAAATTCCAAGCTTTTTTGGCAAACTTTGAGGGAATAATTCGAGTAGAATTCAATAGGAAATCTCCCA TTCCACTTGCCCTAGAGATGAATCAAGGCTGTCCTCAATCTGATGCATGGTTACTCATGAGAAGGCTGAAGTCTCTTGAC CCTGCACAAGTTCAAAATCATTCTCCTTTGGATCCAATTTATTTATCCCCGTAA
Protein sequence (LotjaGi4g1v0418900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHIRRLQLDFDSDEEQADVPPQPHKPTHQAPNPTNSPPEPVIISDEDFVDVSDDPSPPSPPPAPVPQPHAPGCPVSYFLR RLGLGLKREWLADCLRALQGSVRGFEGLDVAAHAKLCFEQFLFADMNFCGGGVLPANVDSMHLDVLPGPYVLQVDEILNM SCPLRGRYQKANPGVKRCLKLSMTDGVQRVFGMEYRPIQALDVCAPSGLKVSISNVKVRRGLLMLDPETVQIKILGGLVE QLDAARQRLVKELNKPPRGTRTKNGVLPPLSTRATLAAWPSSRVDDPGHTAPMLHSTDSVHTNNQATGAGLSMPHTGHRL TSEDTLPMGEQNAASNSIPHTVSNAEARNMDVHRGTYPVSSDNSMGNQFPSSFARAEVHVDTPYITRQNSVGNQSSHAHS NVAATHGDTIHVTRESSVATMCSPIAENVETDKYRNRIPVTTITDSTPLRGSSSTVSTTDDILMGDASDHPLILSPEPGN IIRESSVGNQSSHVHSNVAVADKDNVHVTWESSVATKCSPIAENVVTNHDKIPVITISDNVPLRGSSAVSNTDDVLMVDA ASDHPLMMSGDREVPFTYLASLSAKWAAMKEKSRLVQGKIKCFLTGVKGFQYKKRTTYELQAYVDDGSLISEIIIDHDVV QKGIGYSPQEVTAALSSTDMKTVQNMKETMRKFQAFLANFEGIIRVEFNRKSPIPLALEMNQGCPQSDAWLLMRRLKSLD PAQVQNHSPLDPIYLSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| MobiDBLite | 1 | 69 | 69 | - | – | |
| MobiDBLite | 24 | 38 | 15 | - | – | |
| MobiDBLite | 54 | 69 | 16 | - | – | |
| PANTHER | 72 | 733 | 662 | 3.7E-180 | – | |
| PANTHER | 72 | 733 | 662 | 3.7E-180 | ||
| SMART | 76 | 169 | 94 | 1.1E-24 | ||
| Pfam | 82 | 247 | 166 | 2.0E-32 | ||
| Gene3D | 165 | 255 | 91 | 7.9E-20 | ||
| Pfam | 575 | 716 | 142 | 2.2E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Cellular component | RecQ helicase-Topo III complex | A complex containing a RecQ family helicase and a topoisomerase III homologue; may also include one or more additional proteins; conserved from E. coli to human. |
Expression pattern of LotjaGi4g1v0418900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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