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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0419800 |
| Transcript ID | LotjaGi4g1v0419800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein, putative; TAIR: AT5G13180.1 NAC domain containing protein 83; Swiss-Prot: sp|Q9FY93|NAC83_ARATH NAC domain-containing protein 83; TrEMBL-Plants: tr|I1KP45|I1KP45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0419800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79534335..79536582) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGACATTAATGTTTGCTGCTTTTCTCATCTCTCATTCTCAGCCAATATACATATAAATATGAACTTAATATTCATTG ATATGTACCTGTGCTCATCCTAACAATATTGAATTGGTCAAGAGTACTCATATCTTTCTTTTGGTTGTTGAGTACTCATT AAGCAAATTATGGAAAAGCTGAATTTTGTTAAGAATGGAGTGAGCAGATTGCCTCCTGGTTTTCGTTTCCAGCCAACAGA TGAAGAGCTTGTGTTTCAGTACTTGAAATGTAAAGTGTTCTCATTCCCATTGCCTGCTTCCATCATTCCTCAGATCAATG TCTGCAGCTATGATCCTTGGGATTTGCCAGGTATATTTGGAAACTCTTCAACAATTTTGAGACCAATTCTAAAGAGAAGT TCAAGATTTCAAAATTAATTATGATGAAATAAAAGTTGATCAACGATGAACTTATATTCAATGTGTGTGTAGGAAATTGT GATTATGAGCAAGAGAGGTACTTTTTCAGCTCCAAGGAATCTAAGTATCGAAATGGCAATCGAATGAACAGAAAAACCAA TTGTGGCTATTGGAAGGCAACTGGGTCAGACAAAAAGATATCTTCTTCAACAAGTAATGATGGCATTATGGGGATAAGAA AAACCCTGGTTTTTTACCAAGGCAAGTCACCAAATGGCTCCAAAACTGATTGGGTTTTGCATGAATATCGTCTTGTCGGT GTAGAAACTAGTGCTTGCAACTCAACCCAAGTAAGTTCCTTCCAAATAAAAGATGTGTGCATACGATTTCTGATTTCTGG CGGTCATTCAATCGATATATTCTTTAACAGTGATTTTTTACTGCCACAAACATTAACTGTCGTTCAAACCCTCCGCTGAA ATGATATGCTGATTGGATGTTCGTGAAAATTATATGTGCAAGTAACATTTTCATTCAAATAACGATACTACTCCCTCCGT TCCTAAATAACTGACACTTTAAGGTTGTTGAACAAGTATTAAGAAATACTTCCTCCGGTCCTTTTTATAAGAAACACTTT GGAGATTTTTCTTGGTCCTTTTTATAAGAAACATTCTTATAAAATTAAGTCAAATAATTAATACCAATGCAAAGGGACTT ATTCCCAATACAAAAATATGTAGAGAAATTGCAAGCACCCAATAGGTATGATCAACATTTATGGTAATTAGCATGATTGT TCTTGTAAAAAGGAAAAAACATCATTGGAATTAAGCATAGTAGTTAATTTTATAAAAAATATTAGTTTACTTGGTTTGTG TGATTTTGTCCAAGTTTTTCTTATAAAAATGACCGGAGGGAGTAACAATTAATGTTCTTGTTTTATTAAAATTACAATCT AACTTCCTACTATACCATTTATCTCTCATATTAATTCTAACTTTTCTACCACCAATAAATGAAGGGTACAATTGGTAAAG TATAATTAATGCTCTCTTGAACTTTGTAAAGTGGCAGATAATTAAGAACAAAATTTAGTTAGAAATAGTGTCAGTTATTT ATGAACGGAGGGAGTATTAAACAAGTGAAAACTTGATGGCAAAAATAGAAACAACTTATCTATTTTTTTTCTTAATGGCA TTGGTTTTGAATTTGCAGAACTTAAACGAGATAGGAGATTGGGTTCTGTGTCGTGTATTGATGAAGAAAAGAAGTAGAGA AAGTGATGGCGGCACCACTCATAACATGAATATGCAAAATCCAAGATTGTTTGATTTTATGATGGTGAGCAATAGGAGTA ATTCTTCTTCATCCTCATCGTGTTCAAGTTCCAGTAATTATAACTTCATGGAGGTCTCTTCAAATGCACCTGACCAAGAA GGAACAAGTGGCTATGCTGATTTTTAAGAGCAGCATATAATATGTTTGGATCGATTTTTAATTTTTTCATAATCAATTCC GACTCCGAAGTTATTTACAGAAGTTTCTTCTTAGAATTGATTTTGATTCTAGAATTAATTATAGAAGGAGTTCCAAACAT GTATTTATCCACATATATGTATGTGGTATATCAATTAATGAAAATATGCCAGAGGATGCCTACAGTACTGATTTGCACCT TCAAACATAAGGGTCATTGTAATTGATGATGTATGAGAGATGCACGTTCCCTATCAAAATCTGGTATTATGCTTTTTTTA ATTTTCGTACGTGTTTTTAGCAGTAATTAATTTCAGAGAGCAGGAAGGGTTTATTATGTGCAAATTTTAATAACATAACT TTAAATCA
CDS sequence (LotjaGi4g1v0419800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAAGCTGAATTTTGTTAAGAATGGAGTGAGCAGATTGCCTCCTGGTTTTCGTTTCCAGCCAACAGATGAAGAGCT TGTGTTTCAGTACTTGAAATGTAAAGTGTTCTCATTCCCATTGCCTGCTTCCATCATTCCTCAGATCAATGTCTGCAGCT ATGATCCTTGGGATTTGCCAGGAAATTGTGATTATGAGCAAGAGAGGTACTTTTTCAGCTCCAAGGAATCTAAGTATCGA AATGGCAATCGAATGAACAGAAAAACCAATTGTGGCTATTGGAAGGCAACTGGGTCAGACAAAAAGATATCTTCTTCAAC AAGTAATGATGGCATTATGGGGATAAGAAAAACCCTGGTTTTTTACCAAGGCAAGTCACCAAATGGCTCCAAAACTGATT GGGTTTTGCATGAATATCGTCTTGTCGGTGTAGAAACTAGTGCTTGCAACTCAACCCAAAACTTAAACGAGATAGGAGAT TGGGTTCTGTGTCGTGTATTGATGAAGAAAAGAAGTAGAGAAAGTGATGGCGGCACCACTCATAACATGAATATGCAAAA TCCAAGATTGTTTGATTTTATGATGGTGAGCAATAGGAGTAATTCTTCTTCATCCTCATCGTGTTCAAGTTCCAGTAATT ATAACTTCATGGAGGTCTCTTCAAATGCACCTGACCAAGAAGGAACAAGTGGCTATGCTGATTTTTAA
Protein sequence (LotjaGi4g1v0419800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKLNFVKNGVSRLPPGFRFQPTDEELVFQYLKCKVFSFPLPASIIPQINVCSYDPWDLPGNCDYEQERYFFSSKESKYR NGNRMNRKTNCGYWKATGSDKKISSSTSNDGIMGIRKTLVFYQGKSPNGSKTDWVLHEYRLVGVETSACNSTQNLNEIGD WVLCRVLMKKRSRESDGGTTHNMNMQNPRLFDFMMVSNRSNSSSSSSCSSSSNYNFMEVSSNAPDQEGTSGYADF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 229 | 222 | 2.8E-106 | – | |
| PANTHER | 8 | 229 | 222 | 2.8E-106 | – | |
| SUPERFAMILY | 10 | 169 | 160 | 9.68E-55 | ||
| ProSiteProfiles | 14 | 169 | 156 | 53.391 | ||
| Pfam | 15 | 141 | 127 | 3.4E-33 | ||
| Gene3D | 23 | 175 | 153 | 1.8E-53 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0419800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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