Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0420400 |
| Transcript ID | LotjaGi4g1v0420400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT5G50915.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q93W88|BH137_ARATH Transcription factor bHLH137; TrEMBL-Plants: tr|C0JP26|C0JP26_LOTJA Putative basic helix-loop-helix protein BHLH8; Found in the gene: LotjaGi4g1v0420400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79572474..79576113) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGACCGGTCAAATGTACTGTTTCTCTGCATGGGCATGAGTTACATCTTAAAAGATTTCAGCATTTGATGTGCCAAAT ATCTTTATATATAGTTCTGCCCTCTGAGTTTTGTCACAGTCCAACTTTTTCTGATATATCTGGAAGCTTTTGAGTATCAC CACCAGAACCAACCTTTCTCTCCTTCTATCACTATCTTCCATCTTGATAGCTTCGATTTTCAAACCCAGGCCTCTCAAAA AATGGCAGCTTTTTCACACCACCACTACCATCCCTTTCTTGTTGACTCTACATCACGCTTCATAAAGATGTCGTCTTTGG AGGATGAACTTCTTCAACCCCATATAAACACTACTACCCTTCATCAAGAGACTTCATTTTCTGTCACAGAAACTAGCTCT GTTGATCAAAGCTCCAAGATTACCATCAGTGACAGTGAACTTTCTGTGGAGAAAAATCAGAGTCCTGAGACCTCCATGGT GGTGGCTTCTATGGAAAAGAAGAGAAGATCCAGGAATGGAAGCCCCTTATCTAAGGTGAATTTGAGCTGTAAAGTTTTGT ACTCTAGCTGTTAATTTGATGTAGTGTTTGGTTCAAATACTTTGCTATAAATATACCATTTATGTTAACATTAATTGGTT CATCTTATTAATTTCATTACTTTCTGTGCTCATTTTACAAATTGTTAAAGGACCCAAAAGGGGGAAGCAAGAAACAAAAG AAGGGTAATGGTGGGGTGAAAGAAGAGGACATGGCAAAAGAAGAGAAGAAGGATAAGAAAAAGGGCCCTGAAGAGCCCTC AACAGGCTATATCCATGTCAGAGCAAGAAGGGGCCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGGTATACAGTACAA TACTCTTCAACAACTCGAAACTAATAGCATGTTTGAATTAACTTCTCTTTCATTATAATAATCAATTACATATGAAACCC GAAAGCTATTCATAGTGTGTTTTGCACAACTCCAAGACACTTCTGGGTAAAAGCTATAACTTCATGCTTCTAAGAAACAA ACAAAAAGAGAATAGAGGCTTCTTAACGTGATTCCAGATAAGCAATCACAGAAGCTTCCCTAGAACTGATTATGACTTTA GAATCAATTGTCGAAGAATTTCCAAACATGCAGTATCTCTTGGTTTCCTGATACATGACTAGTTGGATACCAGAATTCCT TATATGCCCCAAAAGTTGATGTCTCATTGTGAATGTTGCAATTTCAGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAAC ATGTTGCAGCAACTTGTGCCAGGCTGTGATAAGGTGAGAAGTTCATTTACTTTTAATCTTTATGCTGAGTATTATGTCTT GGTTGAGAATCTTGAGATAGTTAGATGTTTCTATCAGCTCTTTTAACAGCTACATTTGGTTCTGTTCATAACATAGGTAA CAGGGAAGGCCCTTGTGTTGGAGGAAATAATCAATTATGTTCAGTCCCTACAACATCAAGTAGAGGTAGCTCTACAAAAA AATGAGTTTCTTTTTTAGGCTATTCCACCTTATTAAGTACCTACCATGTGTAATAGCATGTTCGGACCAACTTATTTTAC CGTAAAATCTCACAGAAGCTACTCATAGGAACTTCTCACCAGAATTGACTTTTACTTTAGAATCAAATGCTGAAGGATTT CCAAACATGCTATTAAACTGAACCAGCTAGCTTAATTTTTTTTATACCTTATCTTTTGCAGTTTTTGTCAATGAAACTTG CTTCAGTGAATCCCATGCTCTTTGATATGGCCATGGATCTAGACAATCTCTTGGTTAGACCAGAACAGGTGAGGAAATGG AATCCACAAATTTCCATGTGCTGCTTATATATTAGTTGACTCAAATAAATCTAATGATGAAACTTTGTCTCACTGAACTT TCAGAAAGTAAATAGCTTAGCATCACCACCACTAGTACTACCATGTGTACCATTATGCAACCCCAACCCGGGTACAACCT TTGCTGATACATCAACCCTGAACCCTAGCACCAGCTTCCCCACTGCTAATCATGACTATCTTTTGGATTATCCATGTTCA GATTTTCTTCAAGGGCAGCAGAGACCAAATTTCTTATGTGAGGTAAGATTAGATAATCAGGCGTTTCATGAGATGGTTAA AATACTCATGACATGATATCAGATTTTCTACATTACGTCACTTAGAGTTCCATCTTTTTTAGTCATGATTATTCCTCTAA ATAAAAATTAAATATGCACTTTCCTTCAATAACTTCTAACTATTAAATAATTGGTTTATCATAAGGATAAGTGGATGTTT AGTTTCACGATTTACACATAGTTCAGAGGTTAGGATTTATGGCTTCTAACTAGAAGTTTTCTAGAGCATTTCAGTGAATT GCACACAATTCAACACATGTTTACTCAGAAGTTAAATCTTAAACTCATAGCTTCTGAGAAGAAGTGTGTAGAGCATTTAA ATGTGAAATCAGGCCATCTATAAGGACAAATGACAACAAAACAATAAATTTTAATTGAGGGGGTTATCTTCTTTTCCTGA TTTGTTCTGACAAAAACATAATTTTCAGCATACCGGTGGTCCATTTTGGGACGCTGAAGACCAACGGCAAAAGTTTCTTA ATCCATATGGATACGGCAACAATTCATGTTCCTTAAATTAATATCAAATTCACAGACAAGGCTACAAACATGTTGTGAGC TCTCAAATCATGACTTGTTACAAAAACTACACATATTTATTATCATATCTCCTTATCATATATCCTAACCCTTTTGTTTC AATCTCTTTTTGAAGGCTTTATCTTTTCAATTAGGTAGGAAAATTCCAGACAAGTACCAGAATCAGTGAAAAGAAAAATT CCCATGCATGAACACAAATTGATCAACATTTGAATGAAGGGGATTCTAAAGGACTTGGTTCTTCCTAGTCCATTAGATTA AAGTGAATGAGTACCTTTGAAGTTTGAACATGATGATGAATAAAGTGCAGCAAAATTAATGGATGAAGAGTCCCTGAGAC AGAACATGTCGACCAAATATGACCATATCTTTTTTCTAGATCCGTTGTATTATAAATTTTGACTCTGGTGATGCACAAAT TCCAAGAGACTCTGGATCAATCCTACGGATATCAGAGGATTGAAATTTATGTCGTGTGTAAATTATCAAAAAAATTAATG TTTGTTGGTTTGTTCTTGTGGTGGCAGTTATTCTGTTTGATAATACAGTTAATTTCACCACCGTTATTGAGAAATGAAAG GGTTGATGCAACTGGTATCAGGTCTTTGACAAGACAGGGCCATGCTTTTGTTGTTTTAGTTAACTTGATGTACATCTGCA GAATCTTCAGAGTTTTGGCATTATTGTGGTTCTTTCATTTATTGTTATTGTTGTTAATTGTTCTCAGACCTTGGTTTTCC CTCCTACAATGGAGAGAGATCCTTAGGTAGGGGTCTCCTGTATCCTATCCTATGGTTGAGTCATATATAAATCGAGTAAT GTTTTGTATACTCTCCTTTTCCACCTCCACCTCCAAGGATTAAGAAGAGAAAAAATAAAAAAGAGTGATATGATATGTGA TGTGACAGGAAATGCAGAGAGAGATAGAAAGAAAAATGTG
CDS sequence (LotjaGi4g1v0420400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCTTTTTCACACCACCACTACCATCCCTTTCTTGTTGACTCTACATCACGCTTCATAAAGATGTCGTCTTTGGA GGATGAACTTCTTCAACCCCATATAAACACTACTACCCTTCATCAAGAGACTTCATTTTCTGTCACAGAAACTAGCTCTG TTGATCAAAGCTCCAAGATTACCATCAGTGACAGTGAACTTTCTGTGGAGAAAAATCAGAGTCCTGAGACCTCCATGGTG GTGGCTTCTATGGAAAAGAAGAGAAGATCCAGGAATGGAAGCCCCTTATCTAAGGACCCAAAAGGGGGAAGCAAGAAACA AAAGAAGGGTAATGGTGGGGTGAAAGAAGAGGACATGGCAAAAGAAGAGAAGAAGGATAAGAAAAAGGGCCCTGAAGAGC CCTCAACAGGCTATATCCATGTCAGAGCAAGAAGGGGCCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGA GAGAAAATAAGTGAGAGGATGAACATGTTGCAGCAACTTGTGCCAGGCTGTGATAAGGTAACAGGGAAGGCCCTTGTGTT GGAGGAAATAATCAATTATGTTCAGTCCCTACAACATCAAGTAGAGTTTTTGTCAATGAAACTTGCTTCAGTGAATCCCA TGCTCTTTGATATGGCCATGGATCTAGACAATCTCTTGGTTAGACCAGAACAGAAAGTAAATAGCTTAGCATCACCACCA CTAGTACTACCATGTGTACCATTATGCAACCCCAACCCGGGTACAACCTTTGCTGATACATCAACCCTGAACCCTAGCAC CAGCTTCCCCACTGCTAATCATGACTATCTTTTGGATTATCCATGTTCAGATTTTCTTCAAGGGCAGCAGAGACCAAATT TCTTATGTGAGCATACCGGTGGTCCATTTTGGGACGCTGAAGACCAACGGCAAAAGTTTCTTAATCCATATGGATACGGC AACAATTCATGTTCCTTAAATTAA
Protein sequence (LotjaGi4g1v0420400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAFSHHHYHPFLVDSTSRFIKMSSLEDELLQPHINTTTLHQETSFSVTETSSVDQSSKITISDSELSVEKNQSPETSMV VASMEKKRRSRNGSPLSKDPKGGSKKQKKGNGGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRGQATDSHSLAERVRR EKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNPMLFDMAMDLDNLLVRPEQKVNSLASPP LVLPCVPLCNPNPGTTFADTSTLNPSTSFPTANHDYLLDYPCSDFLQGQQRPNFLCEHTGGPFWDAEDQRQKFLNPYGYG NNSCSLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 42 | 80 | 39 | - | – | |
| MobiDBLite | 42 | 154 | 113 | - | – | |
| PANTHER | 46 | 231 | 186 | 6.9E-75 | – | |
| PANTHER | 46 | 231 | 186 | 6.9E-75 | ||
| MobiDBLite | 82 | 154 | 73 | - | – | |
| Gene3D | 144 | 216 | 73 | 2.6E-14 | ||
| CDD | 145 | 202 | 58 | 2.84921E-11 | ||
| SUPERFAMILY | 145 | 213 | 69 | 6.54E-17 | ||
| ProSiteProfiles | 147 | 197 | 51 | 15.58 | ||
| Pfam | 151 | 198 | 48 | 1.4E-7 | ||
| SMART | 153 | 203 | 51 | 3.5E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0420400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…