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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0422100 |
| Transcript ID | LotjaGi4g1v0422100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trihelix transcription factor GT-4-like protein; TAIR: AT2G33550.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8VZ20|ASR3_ARATH Trihelix transcription factor ASR3; TrEMBL-Plants: tr|G7LIU0|G7LIU0_MEDTR Myb/SANT-like DNA-binding domain protein; Found in the gene: LotjaGi4g1v0422100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79719287..79722440) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGTGTGTCTCATTCTTATCTTCATTTCTCTCAAACTTCATCAGCAATGTCTCAGCAACCTTCTGATCAGGTCATCAT GGCGGCACCACAAAATTCTGAGACAGAAAATGGTCCTTCTTCTGCTGTTGTTGTTGCTGCTGCTCCTGCTCCTGCTGCTG AATCTCCTCCAGTTGAGAGGATCAAAGCCACAAGACACCCTCGTTGGACAAGGCAAGAAACACTTGTCCTCATAGAGTCC AAGAAATTGGTTGAAAATGGCGAACATGGTGGTTACCACCGATTCAGATCACCAGCATCGTCATCTGGGTTGGTTTCTCC TCATCACGGTGATCACAAATGGGATTTGGTGTCATCACTGTGTCAGCAACATGGTGTGAAGAGAGGTGCTGTGCAGTGTA GGAAGAGATGGGGGAACCTTCTCACTGATTTCAGGAAGATCAAGAAATGGGAAACGAGCATCAAGGAGGAGACGGAGTCG TTTTGGATCATGAGGAATGATCTGAGGAAGGAGAAGAAGCTTCCTGGGTTCTTTGATGCTGTGGTGTACAATGTGCTTGA TGGTGGGGTTTGCACTGTTGGTGCATTTCCTCTGACTCTGGTCAAAATGAGTGAGGGAAAAACAGAGAAAACAGGGCATG GTGTTGAAGGAGTGGGGGCAGAGCAAGGTGAGGAGGAGGAAGGGGAGGAGGGAGAGGAGGAAGAGGATGAGGCTATTGTT GACAGTGAGAAAATGGGGTGGAGCACTGAGGAGGAAAACTTTGAGACAAATTCAAATGGAGTTAGGGTGAGTGGTCAAGT GAAAACACCAATTCCTAGGAGGACAAGGATGAGGGGGGGTCTCCAATTCACACCCACATTCACTTTGCCTAATTCAGGTA TGAAATTTCAGTGCCATCTCTCTAATTTATGTTATCATATTACAGTCTATTTGCTTGCATTGCTAAAGAATTGTAATTTA TGTGACATTTTGCATGATAAAATACGCATATCTTTCTCTTACTTTCACATCAATATTTTTCTATTCACCCTTACTTTTGT TGTTGTGTATACCAATTATCGGTGTTTGTTAAAATAATATAAACATTTATATTTACGAAGTGAACCTAACTACGTGAGAT TGAGAGACAAGCTAAAAATCAATATATAATTTAAAATAGTCATTTTTTATATAAAAGTAATCATGTCAAAACACGAATCA CCCTTATATACATCAAAAGTCAAAACCCTAGTCAAATGCACTCTGACCCCTCATGACGTGTCAAGTGGGGAGGTCATACG CATCTGACGTATTCAAATACAAAACATCTCTATAGCTTCTTCTTGTTTGAATGAAAGCGAATTTCAAAAAAAAAATCTTA AGTCCAATTGAACTCGTCAACTTGGTGAAGTGAGTCTATCACCCCGTCCAACCACATTGTCTTTGTCAAATGATTTTACC CGCATTGAAAACGTTCCTCACTTTAAGAGAATAAGCCTAAATTGTTTACTCTGGTCTTGGTCGCCTATTTCATTTCAATT CTATTTTTTCATTTTATTTTAGGCTTAAGGTAATCTCTCAAAAAAAAAGATGCTTGAAAAGAGTTGAAAAAAATCTTTTT GAGTAGTTTTTTATTGATTTTCAGTGTATATTTAAATATAAGCACGGACAAAACCTGTTTGGTTGAGTTTCACTAAGGCT ATAGAGATATTATCACCTACCTTTTTTTCTTATTGATAAATTATTTTCTTGTTGCTTTACATTGAAAAGTAGAGAGGCAG CAACAACCATCTTGCGAAGGGAATAGTGATCCTGGTAAATCAACTCACTACTGCTATTTACTAGTTCCAGTGACACTTCT ATTCATCTTTTGATAGAGAAAGTAAGGAAGTAGGATTTAATATAAAATGATTTTGACACATTCCCACTCTTATTTTCGTT TGTCCAATTTTCACATTTTCTCTTTTTATTTCTTTTTCTTTATCACATCAATTTTCTTAAATTTTATTTTTCTCTCCTTT AATCTCCTCTCACTTTTGAGTGTCCTTAAAGTGTTGATGAAAATTTTCAGATATATAATCCTACATTACCTATCATATAT TTTTATTTTTCTATTTTTCTCTTTTCTAGTTCTATTTCTCCTTGTGTAAGTGTAAGAGGTGAAAATTGATAGTAAGAGTA AGGGTGTGGAAAAATAATAAGGGAGCATTTGATTTTAGCAAGGTTTACATTGGCGTATGCATTCATTAGAGGTGCATTTT TTCTGAACCTTTTTATTGTAGCTTTTTTATTTACCCACATTCAAAACAAATTAGTCGCGGTTTCAAACACACATTAAATA CCTGATTGGAATTGCGTCGCGTACACAATTCAATGTGTATACAGTGAGAAGCTACGTCTACCACCTAAGAGTTCACTAGA TCTTTTCCAAATACACTATAGGGCTTACGTTTTTAGCTAGAAGTGATTTTCTAATACTTAAATGTCTAACCAAACATACC ATGACTTAAGAAAAATTAAGCTCATTGCATGCATCTATTGCTTAAAACTCTCACTTGTCAAATTGCCAACTGGTCTTCAT TAGCAAGCCAATGCAACATCTATTGTTCATTTGACAATCAAAAGCACTACTCATTGATATTATCTAGACTTAGTATCTTT ATTTTAAGCATTATTCCCTCTTATGTTTTAGCAATCTGAATAGAAGTGTGTATTGGTTTCAGGCTATCATGGAGAACCTG TCCAAGAGGGACCAAAGAGAAGGAGAATATCACCAGAAAATTCTGAAGATGACATTGTCAAAGTGATGAGGAGGAACAGC GACATACTGAAAGCCCATCTTGGAGCTCAGAACATGAATCAGCAGTTGGCTAGGGAGCAGCAGAAGCAGCAGACAGAGAG CTTAGTTGCAACGCTTGGAAAACTTGCAGATGCTCTCACCAAAATTGCTGACAAGCTGTGAATGAATCAATGAATTCACA AGAAAAACTATTAAAGATTCTTCATACCTCTTTCAGTTGCTGTTAAATTTTCAGTATCATGGAATTTCCCCATTTAAGTA CTTAGAGATTTTGGTTGAACAAAATTTTTTTATTGTCTTTTTAAAAACTCCATTTTTCATCATCATGAAGTTAATGTTGA TGACTTTTATTCGGTACACAATTCTAGATGCAGC
CDS sequence (LotjaGi4g1v0422100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCAGCAACCTTCTGATCAGGTCATCATGGCGGCACCACAAAATTCTGAGACAGAAAATGGTCCTTCTTCTGCTGT TGTTGTTGCTGCTGCTCCTGCTCCTGCTGCTGAATCTCCTCCAGTTGAGAGGATCAAAGCCACAAGACACCCTCGTTGGA CAAGGCAAGAAACACTTGTCCTCATAGAGTCCAAGAAATTGGTTGAAAATGGCGAACATGGTGGTTACCACCGATTCAGA TCACCAGCATCGTCATCTGGGTTGGTTTCTCCTCATCACGGTGATCACAAATGGGATTTGGTGTCATCACTGTGTCAGCA ACATGGTGTGAAGAGAGGTGCTGTGCAGTGTAGGAAGAGATGGGGGAACCTTCTCACTGATTTCAGGAAGATCAAGAAAT GGGAAACGAGCATCAAGGAGGAGACGGAGTCGTTTTGGATCATGAGGAATGATCTGAGGAAGGAGAAGAAGCTTCCTGGG TTCTTTGATGCTGTGGTGTACAATGTGCTTGATGGTGGGGTTTGCACTGTTGGTGCATTTCCTCTGACTCTGGTCAAAAT GAGTGAGGGAAAAACAGAGAAAACAGGGCATGGTGTTGAAGGAGTGGGGGCAGAGCAAGGTGAGGAGGAGGAAGGGGAGG AGGGAGAGGAGGAAGAGGATGAGGCTATTGTTGACAGTGAGAAAATGGGGTGGAGCACTGAGGAGGAAAACTTTGAGACA AATTCAAATGGAGTTAGGGTGAGTGGTCAAGTGAAAACACCAATTCCTAGGAGGACAAGGATGAGGGGGGGTCTCCAATT CACACCCACATTCACTTTGCCTAATTCAGGCTATCATGGAGAACCTGTCCAAGAGGGACCAAAGAGAAGGAGAATATCAC CAGAAAATTCTGAAGATGACATTGTCAAAGTGATGAGGAGGAACAGCGACATACTGAAAGCCCATCTTGGAGCTCAGAAC ATGAATCAGCAGTTGGCTAGGGAGCAGCAGAAGCAGCAGACAGAGAGCTTAGTTGCAACGCTTGGAAAACTTGCAGATGC TCTCACCAAAATTGCTGACAAGCTGTGA
Protein sequence (LotjaGi4g1v0422100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQQPSDQVIMAAPQNSETENGPSSAVVVAAAPAPAAESPPVERIKATRHPRWTRQETLVLIESKKLVENGEHGGYHRFR SPASSSGLVSPHHGDHKWDLVSSLCQQHGVKRGAVQCRKRWGNLLTDFRKIKKWETSIKEETESFWIMRNDLRKEKKLPG FFDAVVYNVLDGGVCTVGAFPLTLVKMSEGKTEKTGHGVEGVGAEQGEEEEGEEGEEEEDEAIVDSEKMGWSTEEENFET NSNGVRVSGQVKTPIPRRTRMRGGLQFTPTFTLPNSGYHGEPVQEGPKRRRISPENSEDDIVKVMRRNSDILKAHLGAQN MNQQLAREQQKQQTESLVATLGKLADALTKIADKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 19 | 355 | 337 | 1.2E-115 | – | |
| PANTHER | 19 | 355 | 337 | 1.2E-115 | – | |
| Pfam | 51 | 148 | 98 | 2.2E-11 | – | |
| ProSiteProfiles | 52 | 125 | 74 | 6.168 | ||
| Gene3D | 53 | 131 | 79 | 6.7E-6 | – | |
| MobiDBLite | 72 | 91 | 20 | - | – | |
| SUPERFAMILY | 92 | 133 | 42 | 7.18E-5 | ||
| MobiDBLite | 191 | 224 | 34 | - | – | |
| MobiDBLite | 205 | 224 | 20 | - | – | |
| MobiDBLite | 274 | 294 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0422100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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