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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0423700 |
| Transcript ID | LotjaGi4g1v0423700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Stress responsive alpha-beta barrel domain protein; TAIR: AT2G32500.2 Stress responsive alpha-beta barrel domain protein; Swiss-Prot: sp|Q1MND5|TRPA_RHIL3 Tryptophan synthase alpha chain; TrEMBL-Plants: tr|A0A151TEY5|A0A151TEY5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0423700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79867418..79870527) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTATTTTCTACCTTTGTTTTCGTGACACACCTTTATATCTCTCTCCTTCATCACAGAGCAAAAGAAAATCAACAGA AAATTTCAGATTCTGCTGAATCTGAAATGACCATGGGGTTTGGTTTTGCAATGCAATGCTCCTCAAGCTATGGTGGCTAC TCTACCTGTGTCTCTCCACAACCTCATCGATCTTTTCACGGTTAGTTACTAAGTTAGTTACTTCAACTCTCAACTCATCT TCCTCAATCAATTTGATTTAGGTTTTGTTTGGTTCAACGGAAAATCAACGTTTCTTCGCAATAGGTCACTACTGGAACGG ATTCACGAGCTCACGGAAGAATCAGAGGGTGGTTCTTCGTGTTGCGGACGAGCGAAGCTCCAACTCCAACTCCAATCTCA GTTCTCAGAAGAAAAGGTTTTCTTCGTTTCTTCGTTACTATCATAGTTAGCTTCAAATTCCCCAAATTTCTGTGATCATA AATGTGGATATTGTTTCAATTTCATGTAGAAAAGTTGTGGAACATGTTTGTCTGCTGAAAGCGAAAGGGGATTTATCTGA ACAGGAAGAGAGTGACATGCTTGATCATTTGTACACAACACAGTATCAAATGGGTGGCATTGTTGCAATTTCATTAGGTA TTGCATTTGCATTCATAGGTGTTAGCTACATACATACATTGCATTTCTATTATACGCAGAATCGATGAGCGATGCTTGTT TGTTAATATGATGATGATGATGATGTTGTTGTTGCTTGCTTCGTTAGGTCGCATTTCTGCTGCGAATCCTGAGAACTATA CGCATGCTTTGTATATGCGGTTTCAGGGGAAGGAATATCTTGAAAAGTTCTATCACAATCCTTTTTACTTGAAGGTTCTC GATGACCACGTAATGACTTACTGCCATGTATGCACCAACATGTAAACACCGATTCTCTGTTCCTTTATTTTATTTTTTAC TTCTTTTTCTTGTTGAGTGAGACTCCTTGGTTTTAACTTTGCCCTCAAGCTAAACTGATTTCTGTTCCAGGGATTGATTA ATGTGGACTTTGAATCCCAAGTGGATGATGACATGCTTTCTATATTTCGCAAAGGAGAGGTTGGAACTCACTTAACTTCC TCTTTAGGATATATATTGAAGGGTTGTCATTAAATGGACATAATTGCACCTTGGTTCTTTGTATTTGATTTTATGCAGTC TCCGTTTTTCTTATTCCAACAATGATTTTTTTGGGGTTGGGGGGGTGCTTTAAATGAATTTTGTGGTTAGGAGTTCAACC ATGGAGTAGAGTTTGTGCTTTTGATATCATTCAATGAGGATGCATTGGGTACCCTGGTGGAAGATGCATTGGCCTCTCTG GCATCATTGATGTTGGATGCTCCATCCTTGATTGTCCAATTTACTCAAGGTATGTTTCCAGTTCAACAAACTCTTAGAGC ATGTTTGGTTTATTGAAAGTACCTCCACTTTGCTTTGGAAAGTGGGATCCCATATTCCCAAGCACAAAACGTGCAAGCAA GAATTTTGAAGGGTTGGAGCTTGGAGTTGAATGTGGTTGGATGTTAAAGCAAACATTAGTTGTTTTATTGAACTTGGTTT GTTGGCTCATCCAAAGTTTAATTTTTTTCTAAATTACATGAGGATTGTATGGAGAAAATCCTTGTGTCTAAGACTCTTAA GTTTTCGTATTCTACATGGGTAATTCCTATTTAATTGCCAGGTTTGAATTTTAGTCCAAGCTCTAAGGAGTATACTCATG GAGTAGTGATACGATTTCGATCAGGTAATCTCAGTCTCAAGCTCTGTAACCGTGTTACGTCTGATTTTCTTTCACTTGGA CATGTTGACTGGTTTTGGTGCATGATGGCATGTTTTGCAGTTGAAGCATTTGAGATATTTATACGCAGCAAAGAGTATAA AGATGTAAGGACCCAACATATTGTTCCATACACATTTTGACAACTTCCCTTGGGTAGTTATTTGTTATACACCTTTTGGT CTGAACTCTGAAGTACCATACATTTAAGAGACAGATGATATCTTCACTTTCATGCCACTTCTAAATGTTTCCCTTTTCAG TAAACAATATAATATAGAAAATTTGTTTGGGATCATACTATCAATTTCGTCATTTTGTCCTCGAAAATGACAACAATCTA GTTTGTTGGCTGACACTCTCATTTTTACTTGGACATTTGTCATTTTGATTATATTAAATTATGAACTTATAATGAGCAGA ACTGAAATATAATTTCTTAAAGATAAATATGTTTTAGAAAACTTAACTAGTACACCGTTGGTGACAATATCTCAAGGAGA ACAAGCATATCAAGAATGTAAATTATATTTGGATTTGGAAAACAGGTTTGGAGATCTAAGTTCCAGACAATTGTCCAGAA ATCATTATCTCTTCATTTCTCTGTTGATCCAGTGGGAACTGAGATTATGTAGTGAGGATGATTCATGGTAATTTTTTGCT ATTTACCTACTTGGCATATATGGAAGTGACATACATATTTCTCATATTTTGTTCCAAATGCTTGCAGGTTTTCAACAAAA GATGCGGCTTGGTTTCCTCTTCTTTTCAGGAACAGGGATGAAGGTTATTTCCTGCTTTCTATTTCAACTCATGTTCTTTT GCTATGAACTATAACTATAGTATTGGTGTCCACTTTATTTTCTGCAACATTCTGAAACTTAAATTCCATATGTAATTTTT TTTTTCAATTACCAATTTATCCCGATAGCCATGAGACTAATTCTCTGAGACTCCGAGATCACATTAAGTAGGTAAACCTC ATATGAAGTTTTTGTTGCTTATTTATATGTATTTTCTTAATACTCAACGCGTCTGGACCTACTATCTGCATAATGCTTCG CTTCGATTTTGCTATGCTAATGTCAAAATTAAGCCTATGAGTTGCTCTTTGTATTCTCCCTAAAGATTTTTGTATTAAAT GTAATAAAATAGATTTTATGGACTTATGCTAAACTCATAGTAGGGGTGGCAAATAGATGGATTTGAATATGGATTGTAAT GGATGAGTCAAGAACAATTGATCTCTTTGTATTCTCCCTAAAGATTTTTGTATTAAATGTAATAAAATAG
CDS sequence (LotjaGi4g1v0423700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCATGGGGTTTGGTTTTGCAATGCAATGCTCCTCAAGCTATGGTGGCTACTCTACCTGTGTCTCTCCACAACCTCA TCGATCTTTTCACGGTCACTACTGGAACGGATTCACGAGCTCACGGAAGAATCAGAGGGTGGTTCTTCGTGTTGCGGACG AGCGAAGCTCCAACTCCAACTCCAATCTCAGTTCTCAGAAGAAAAGAAAAGTTGTGGAACATGTTTGTCTGCTGAAAGCG AAAGGGGATTTATCTGAACAGGAAGAGAGTGACATGCTTGATCATTTGTACACAACACAGTATCAAATGGGTGGCATTGT TGCAATTTCATTAGGTCGCATTTCTGCTGCGAATCCTGAGAACTATACGCATGCTTTGTATATGCGGTTTCAGGGGAAGG AATATCTTGAAAAGTTCTATCACAATCCTTTTTACTTGAAGGTTCTCGATGACCACGTAATGACTTACTGCCATGGATTG ATTAATGTGGACTTTGAATCCCAAGTGGATGATGACATGCTTTCTATATTTCGCAAAGGAGAGGAGTTCAACCATGGAGT AGAGTTTGTGCTTTTGATATCATTCAATGAGGATGCATTGGGTACCCTGGTGGAAGATGCATTGGCCTCTCTGGCATCAT TGATGTTGGATGCTCCATCCTTGATTGTCCAATTTACTCAAGGTTTGAATTTTAGTCCAAGCTCTAAGGAGTATACTCAT GGAGTAGTGATACGATTTCGATCAGTTGAAGCATTTGAGATATTTATACGCAGCAAAGAGTATAAAGATGTTTGGAGATC TAAGTTCCAGACAATTGTCCAGAAATCATTATCTCTTCATTTCTCTGTTGATCCAGTGGGAACTGAGATTATGTAG
Protein sequence (LotjaGi4g1v0423700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMGFGFAMQCSSSYGGYSTCVSPQPHRSFHGHYWNGFTSSRKNQRVVLRVADERSSNSNSNLSSQKKRKVVEHVCLLKA KGDLSEQEESDMLDHLYTTQYQMGGIVAISLGRISAANPENYTHALYMRFQGKEYLEKFYHNPFYLKVLDDHVMTYCHGL INVDFESQVDDDMLSIFRKGEEFNHGVEFVLLISFNEDALGTLVEDALASLASLMLDAPSLIVQFTQGLNFSPSSKEYTH GVVIRFRSVEAFEIFIRSKEYKDVWRSKFQTIVQKSLSLHFSVDPVGTEIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 290 | 268 | 1.2E-119 | – | |
| PANTHER | 23 | 290 | 268 | 1.2E-119 | – | |
| Gene3D | 64 | 167 | 104 | 1.6E-11 | – | |
| SUPERFAMILY | 70 | 173 | 104 | 8.72E-15 | ||
| Pfam | 72 | 166 | 95 | 1.4E-7 | ||
| SMART | 72 | 167 | 96 | 5.8E-12 | ||
| ProSiteProfiles | 72 | 165 | 94 | 18.961 | ||
| Gene3D | 184 | 287 | 104 | 4.5E-7 | – | |
| SUPERFAMILY | 187 | 286 | 100 | 1.41E-10 | ||
| ProSiteProfiles | 187 | 281 | 95 | 17.004 | ||
| SMART | 187 | 283 | 97 | 6.2E-5 | ||
| Pfam | 191 | 281 | 91 | 8.5E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0423700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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