Transcript — View — Lotus Base

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LotjaGi4g1v0425000.3

Overview

Field	Value
Gene ID	LotjaGi4g1v0425000
Transcript ID	LotjaGi4g1v0425000.3
Related isoforms 2	LotjaGi4g1v0425000.1 LotjaGi4g1v0425000.2
Lotus japonicus genome version	Gifu v1.2
Description	Threonine dehydratase; TAIR: AT4G11640.1 serine racemase; Swiss-Prot: sp\|Q2PGG3\|SRR_ARATH Serine racemase; TrEMBL-Plants: tr\|A0A1J7FZS3\|A0A1J7FZS3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425000
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:79981543..79983761) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAAGAGGATAGCCAAATAACAAAGGGAAAGTATGCTGCTGATATTTCCTCCATTAAGGAAGCCCATGATCGAATAAA ATCGCAGGTTCTAATAACTCCAGTTCTCTCCTCCGCCTCTCTGAATGCTATATCAGGAAGGCAGCTGTACTTAAAGTGTG AATGTTTCCAAAAAGGGTGAGAAATGAATTTGCCATGAATTGTTACTTTTCATTTTTTTATTGGTGTACTTTACATTCCA TCACACTCTTGTAATACACTTCCTTCTGTATTCTATGGCTTTCAGTGGAGCTTTTAAATTTAGAGGTGCCTGCAATGCTG TTTTCTCTCTCAACGACGAAGATGCTTCCAAAGGGGTTATTACACACAGCAGGTATGCTATGTGAAGTAATTCTAGAAGT TTGTTGTTTTAATCAGATTCTGTAAATTTGAAGCTCTCCTGATTGTGTCCTACAAAACCAGTGGAAACCATGCTGCAGCG TTGGCTTTGGCAGCAAAACTACGCGGTATCCCTGCATATATAGTTATTCCAAAAAATGCTCCAACTTGCAAAGTTGAGAA TGTAAAGCGGTACGGTGGTCAGGTTATCTGGTCTGATGCCTCTATGCAATCAAGGGAGGATACTGCAAAGAAAGTGTTGC AAGAAACTGGTGCTATCCTTATACATCCATATAATGATGGACGCATATTGAGGTCCAATGTTGAATACTTTATCATTGTT TAATTTGTTTCTGACTTAAATGCCCTGTCATTAAACAGTTTTAGGGGATGATAATCATTTGGTAGACTCATTCTTTTCAT AGCAATTTTACCAATCAGATCATGTAGTGTATAAGTGGTGCTTGAAGCTTACCAATCATACCATGTAGTTGTTCTTCTTA TTCTTCTAACTGATTGCTGAAGTGCAAGATTTATGACACTTCAAACTCAAAAACATGACATATAACATAGGCATATTGTT AGATTTGATCCCTAGCTATAATAGATAGTAATGATAGCCTAGTAGTTATGGTGATTTAAGAGCTAAAAACGAATTTGCTT TATGTATTGGTTATTTTATTGTTACATACTTATGCTCTGCAAGACCTTTCATATGGTCGTTTGCGCATAAAAGTATAAAA GCTCGTAAGCTATTAATAAAACACTTGTAACAGTTTATACAGAAGTTTGTAATTTCCTCTCTTCACTTTAAGTCTGTTGC TTGCTTTTTCTGCATTTAATCTATTTTCTTAACACATACTATAGGAATTGGTGACTTGCACACAGTTGCACTGACACATG TGATTGTTCTTGCAGTGGCCAGGGTACCATATCATTGGAGTTTCTGGAACAAGTCCCACATATCGATACGCTAGTGGTAC CTATAAGTGGTTTGTTCACCTTTTTCTGTCAAGCTGTGTCAGCCAAAATGTTCAAAAGAGTGCATTTGTTTCAGTATCGG CTTCTTGATTTTCCAACAAATGAAAACTGCAGGTGGTGGTTTGATATCAGGAGTAGCATTGGCTGCCAAGTCCATCAACC CGGCTATTCGGATTTTGGCTGCTGAACCTAAAGGGGCTGATGATGCAGCACAATCTAAGGCAGCTGGGAGGATAATAACA TTGCCTGAGACCAATACTATAGCTGATGGGCTCAGAGCATTTCTTGGAGATTTCACATGGTAAAAACAAATCTTTAGTAA TCAAGATTATGAACTAAAAATAAAGTTGCTGCTCTCCCTTTTGTTCTCTTGGTTTTGTTATACTGTGTTAATGAATACAT ACTTTCTTTTTTCCCTTTTTATCATTCCCTTGTTCAACAAAATCTGGTTTTTTTTCGAGTACAACGACGTCAGGTGATCC ACGTAGCCGACCTCATTTACTGGATAAGACTTTTGTTGTTGTTGTTTAACATTCCCTTGTCTCATTGATTTTTACGCATC TGTTAATTTGTTGAATTTTCTTACACGCCATGTCATAATGGAGCAGGCCTGTGGTCCGAGATCTTGTTGAGGACATAATA ACTGTAGACGACAGTGAAATCATAAAAGCCATGAAACTGTGTTTTGAAATTCTTAAGGTTGTTGTGGAACCAAGTGGAGC AATTGGCCTTGCTGCTGTTCTATCCGATACCTTCCAGAAAAATCCTGCATGGAAGGATTGCAACCATATTGGAATTGTAG TTTCAGGAGGCAATGTTGATCTGGCCGTGCTTTGGGATTCTTTTAACAAAGCAAAATGA

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0425000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGAGGATAGCCAAATAACAAAGGGAAAGTATGCTGCTGATATTTCCTCCATTAAGGAAGCCCATGATCGAATAAA ATCGCAGGTTCTAATAACTCCAGTTCTCTCCTCCGCCTCTCTGAATGCTATATCAGGAAGGCAGCTGTACTTAAAGTGTG AATGTTTCCAAAAAGGATTCCATCACACTCTTGTAATACACTTCCTTCTGTATTCTATGGCTTTCAGTGGAGCTTTTAAA TTTAGAGGTGCCTGCAATGCTGTTTTCTCTCTCAACGACGAAGATGCTTCCAAAGGGGTTATTACACACAGCAGTGGAAA CCATGCTGCAGCGTTGGCTTTGGCAGCAAAACTACGCGGTATCCCTGCATATATAGTTATTCCAAAAAATGCTCCAACTT GCAAAGTTGAGAATGTAAAGCGGTACGGTGGTCAGGTTATCTGGTCTGATGCCTCTATGCAATCAAGGGAGGATACTGCA AAGAAAGTGTTGCAAGAAACTGGTGCTATCCTTATACATCCATATAATGATGGACGCATATTGAGGTCCAATGGTACCAT ATCATTGGAGTTTCTGGAACAAGTCCCACATATCGATACGCTAGTGGTACCTATAAGTGGTGGTGGTTTGATATCAGGAG TAGCATTGGCTGCCAAGTCCATCAACCCGGCTATTCGGATTTTGGCTGCTGAACCTAAAGGGGCTGATGATGCAGCACAA TCTAAGGCAGCTGGGAGGATAATAACATTGCCTGAGACCAATACTATAGCTGATGGGCTCAGAGCATTTCTTGGAGATTT CACATGGCCTGTGGTCCGAGATCTTGTTGAGGACATAATAACTGTAGACGACAGTGAAATCATAAAAGCCATGAAACTGT GTTTTGAAATTCTTAAGGTTGTTGTGGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGATACCTTCCAGAAA AATCCTGCATGGAAGGATTGCAACCATATTGGAATTGTAGTTTCAGGAGGCAATGTTGATCTGGCCGTGCTTTGGGATTC TTTTAACAAAGCAAAATGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0425000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEEDSQITKGKYAADISSIKEAHDRIKSQVLITPVLSSASLNAISGRQLYLKCECFQKGFHHTLVIHFLLYSMAFSGAFK FRGACNAVFSLNDEDASKGVITHSSGNHAAALALAAKLRGIPAYIVIPKNAPTCKVENVKRYGGQVIWSDASMQSREDTA KKVLQETGAILIHPYNDGRILRSNGTISLEFLEQVPHIDTLVVPISGGGLISGVALAAKSINPAIRILAAEPKGADDAAQ SKAAGRIITLPETNTIADGLRAFLGDFTWPVVRDLVEDIITVDDSEIIKAMKLCFEILKVVVEPSGAIGLAAVLSDTFQK NPAWKDCNHIGIVVSGGNVDLAVLWDSFNKAK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR43050 View details on PTHR43050 Search for proteins/transripts with this domain View external data on PTHR43050	9	348	340	6.2E-150	–
CDD	cd01562 View details on cd01562 Search for proteins/transripts with this domain View external data on cd01562	16	340	325	1.17452E-127	–
SUPERFAMILY	SSF53686 View details on SSF53686 Search for proteins/transripts with this domain View external data on SSF53686	16	343	328	2.88E-81	IPR036052 Show description in modal box View details on IPR036052 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1100 View details on G3DSA:3.40.50.1100 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1100	19	59	41	5.6E-6	IPR036052 Show description in modal box View details on IPR036052 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF00291 View details on PF00291 Search for proteins/transripts with this domain View external data on PF00291	31	320	290	1.9E-65	IPR001926 Show description in modal box View details on IPR001926 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1100 View details on G3DSA:3.40.50.1100 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1100	75	340	266	4.5E-103	IPR036052 Show description in modal box View details on IPR036052 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1100 View details on G3DSA:3.40.50.1100 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1100	79	175	97	4.5E-103	IPR036052 Show description in modal box View details on IPR036052 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0425000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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