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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0426500 |
Transcript ID | LotjaGi4g1v0426500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Early nodulin 93; TAIR: AT5G25940.1 early nodulin-like protein; Swiss-Prot: sp|Q02921|NO93_SOYBN Early nodulin-93; TrEMBL-Plants: tr|I3S6T4|I3S6T4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0426500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80109954..80111997) extracted from Lotus japonicus Gifu genome v1.2.
CACATGCCCAGGGTCCTTGCCAATTTTTTTTTTACTTGGGCCGCAGGCCCTTTTTGAGAAAATAAAAGATCAATGACAGC GTGAGTGAGTACAGCCCTTACACACACGTTTTTGTTTTCCTCTCACGCACGCACGCACACATTCTGAATCGCACATCGTC TTCTTCCTCTTTCCCTGATTCCCTCCGACTCCGAGCTTGAGCTGCTTCTTCCTCTCTCTCGTTCTCTACACTGAAACTGA AACTTTGTATCAGGTATGTTGATTCTGCTGATTGCCTTCATCTGATTTAGTGTGTTTCATTGGTATTTGGTGATGCTGTT TTTTTTGTTTTGTTGATCTATCCAATTTCAATATACTATGTTCCTATTGCAATAGTGGCAATTGTTGAGCATGTCAATTT TGAGCTAATTTAATTGTCAAACACTGAGAGAGATTCATTTGAAGATAGCAGTGGAGGGGAATCTGATTTATATAGCCAGT ATGTGAATTGATTGCTATAGCACTGCCGGGAAACTGATTTTTTTTTGTTTTATATAGCCAGTATGTGAATTGATTGATTA GTATAGATGAAGAAGATCAAGTCAGGAAAGAAAAAGCCAGGTTTATCCTGATAAAATTGATCCACATTCCACACTCAAAT TGATTGTTAGGGAAAGGTGATGAATGAATATTCATGTATAGATGAAGATAAGTTTTGCTACTGCTCTAATCCCAGCAGCT CTAGTGTCACTTATAGAGGAAGGAAATGATTATATTGATGTATTCATGAAGATAAAGTTTTGCAATATATGTAGAAAATT TCCAAATGTTGTAATTAAGCATTGGAGTTGTTTAGCGTGTCATAGTTTGTGCAATTTATATGTTAACTTAGCAAATAAAT AGTGAAAAGTCTATTTCTATTTACATGTCACTTCTTTATAGGTTTGCGCGTTTGGGACTTTGCCCAGGCTCCTCCACTGA ATATATAAATCAGAGAGACAATTTATTTCCCATGCATTGCTTTGCTTGACCAACATGTTTTCCATGTATTGCCTGACAAA CTTCTTTTTGCTTGAATGTAGGCTTGTACTTTTTGCAAACTATTTCTACTAGGTGAGATATAACTAGGAAGGAGGAATTC GAAGAATGGGTATCCCGTCGGAATTGAGGGATATGTGGGTCTCCAAAAGTAAAACACCTTTCCTTATTGCTTCTCCCGCC GAGGAGAGCAAGCTTTTGAGGTCTAAGCAATGTACTAATGAGGGTGTGCGTGCTGGATTCAAAGCTGCTACTATTGCATG TGTTTCCAGCGCTGTGCCGACGTTGGCTGCAGTTCGCATTATTCCATGGGCGAAGGCAAACCTCAATTATACTGCTCAGG CACTCATCATATCTGCTGCATCCATTGCCTCATACTTCATCGCTGCTGATAAAACTATCTTGGAATGTGCAAGAAAGAAT GCCCGGCTTCAAGACTCTCTGAGGCATGATAATAAAGTTGCATCTTAGAAACTGCAGTACCCATAGTTGGTCAAGTGCAT AATGGTGCTACTTGTAATACAATCAGTGGGCCTAGGCCTAGTGCAGATGGTTTTGAGGGGGTTATGCACTTCAAATAAGA TATTTTGTATTGTGTGACAATCATTTGAAATTGCCTTTCCCCACGGCTTCAGAATTCGTAAGACATTCTATGCAGGGGTG TATTTGTTTTTCTAGCATGAGTTGTCATTTCTACTTGTCAACATAAAAAGAACAGTTGCAAATTTCCATGAGCAGCAGTT TAAAGAAAGAAAAAAAAGAGGGAGGAATTCTTACTGTTGATTCTGAATAGGATTTCTTTGATTTTACAATAATATCGTAT GTTTCTTTGATTTCATAGAATATTAACCGTTAGCCATCATTATATCTATTAAAAGCCATTTTTTTAATCATCTTTTTTTG AAATAGTAATAAAGTAACAGAGAGGAATATATCTCGTTTAAAATAAGAGCTATGCTATATAGCTTGAAAGAAATATACGT CGTTTCAAATTTCGTTTGGTAATCTTAAGCAATTTCTTTGAAGA
CDS sequence (LotjaGi4g1v0426500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTATCCCGTCGGAATTGAGGGATATGTGGGTCTCCAAAAGTAAAACACCTTTCCTTATTGCTTCTCCCGCCGAGGA GAGCAAGCTTTTGAGGTCTAAGCAATGTACTAATGAGGGTGTGCGTGCTGGATTCAAAGCTGCTACTATTGCATGTGTTT CCAGCGCTGTGCCGACGTTGGCTGCAGTTCGCATTATTCCATGGGCGAAGGCAAACCTCAATTATACTGCTCAGGCACTC ATCATATCTGCTGCATCCATTGCCTCATACTTCATCGCTGCTGATAAAACTATCTTGGAATGTGCAAGAAAGAATGCCCG GCTTCAAGACTCTCTGAGGCATGATAATAAAGTTGCATCTTAG
Protein sequence (LotjaGi4g1v0426500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGIPSELRDMWVSKSKTPFLIASPAEESKLLRSKQCTNEGVRAGFKAATIACVSSAVPTLAAVRIIPWAKANLNYTAQAL IISAASIASYFIAADKTILECARKNARLQDSLRHDNKVAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 46 | 46 | - | – | |
PANTHER | 15 | 109 | 95 | 1.6E-47 | ||
PANTHER | 15 | 109 | 95 | 1.6E-47 | – | |
Pfam | 29 | 105 | 77 | 5.0E-39 | ||
TMHMM | 43 | 65 | 23 | - | – | |
Phobius | 47 | 69 | 23 | - | – | |
Phobius | 70 | 74 | 5 | - | – | |
TMHMM | 75 | 94 | 20 | - | – | |
Phobius | 75 | 94 | 20 | - | – | |
Phobius | 95 | 120 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0426500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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