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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0428000 |
| Transcript ID | LotjaGi4g1v0428000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hydroxyproline-rich glycoprotein family protein; TAIR: AT5G52430.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9SRE5|Y1666_ARATH Uncharacterized protein At1g76660; TrEMBL-Plants: tr|I1K6H3|I1K6H3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0428000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80234661..80238282) extracted from Lotus japonicus Gifu genome v1.2.
CGATAGTATAATTACATTAATCATGATGATAAAATAGAGCATTGAATGAAGGAAACCCCGTCCGTAAAAGCTAAGACTAG CCTAACCGTGTCATTGTCAAATGACACACACACACACACGAGGTGCAAGTCATTGGCGTGTTTGACCTCAACTCACCTCA AACCCAAAAACAAAAACAGCGTTATGTTATACTGTCACACACGACACAAATAACAACACTTCTGTCTTCTGCAACCTCAG ATTTCATTCTCAACTTTTCCTTGTTCTGCAATCTTCCAACTTCTTCTTTATGCTAAATATTTCTCTCCTTGCTCTGCCTC TTTCATCATCCGTACCACGTTTCAGTACCTTCAGAGATGAGAAGAGCTCATGGGAATGATGGCAGAGCTTCTGTCACCAA TACTTTGGACACTATAAACGCTGCTGCTTCTGCCATAGCCTCTGCTCACACCCACAATCGCACTTCTCACCATCCTCTTG AGGTATAAAATCCCATAATAAACTCTGTTATTTTCATTCCTGTTTTGGAAAATAAACAAAAGATGAAGGTGCTTTTTTAC CCAACAAAGTGCTATAGATTTCTACGCTTTGTTTATTTGATCATTTTGATGGTATGAACTTTTTCCCTTTTGGGTTTCTG GGTTTTCTTGCTTTTTTGCTCTGGTTTTTGTGTTGAACGTGGCACTCTGGGGTTGAATATCTATAATAGATCTCTTTTCC TGAAACAATAGATCTTTTGATTTTCTTTTACCCTTTTATGTGTCTGATGATATGAACAAATAAAGTAGTATCAAACTTTT CATCTTCAAAAGACAATTAGTTTGGGGGAAATTAATTAAACAATGTTAGGATTTTCCTGTGCTTAGTCTTCGGTTCGTTA AGGAGAAAGCGTGTCAAGTTGAAAGTCTTAGGTTCTTGCACTGTTTGTTTTTGCTTTTTTTTAGTACCAGTCATTTTCTT GTTAGGTTACTTGTAATAAAACAGAAAATTTAATTTTTTTATTATTTTTATTTTTATGTATGTTATCTCTGTGGAGACAG GTCACTGCAAGGTAGGAAGCAGTTTGAATTATGCATCCAGTTTAGTGAAATTAACAAAAGGAAATTGTCAATTTAGTGGG TTTTTTATAAAAAAAATTAAAAATTGTTCAACTCTCAATTTCTGATAAACAGATTAATTTAGACCCAAACATAGTTAGGA GTAACTACCAAGTGGGAAGATTGCATCAAACATCTCATACTTTGATTTGAATCAAAAATCTAAAGAAGTGATTTCTAATT TTCTATCTGCTGCAGCATCATGTTTGTATCAGCTTCTATTTCTCATGTTCAATTCTTAAGTTGAAAATTAATTGTAGAAT GATTTCCAAACCTGCAATTGTTTGTCCTGATTCATGCTGTGAATGACGATTAATCAACTCAATACGTTTTTCACTCTGCA ACCAATAAGAAACTCTTTCAAGAATGGAAGTTCTGGGAATAACTACTATGTATATTTCTCATTCAATCTGGGGTGGGATC TGTCAATATTAAAATGAAGGTCTAATTTATATTCAATTTGTATACAACTATCAGTAATTGGTACTTCTGAGCATATCAAG GGAACACTTATTACATGATTGGATCAGCTTCTTTTTTCTCGGAATCAATTCTGACATCCATAAAGCAAAGCTTTCTTTGC ATAATTGATTTTGACTTTGGAATTAATTGTAGAATGATTTCTATACATGTACTTAATTATGTCTAAAACTCACGTCAGCT TCTTTGATTTGTAGAAGAAAAGATGGAGAAGCTGGTTGAACATATCCGGGTGTTTTGGATATCACAACAAGAACGCAAGG CGCGTTGGGGACGCTGTCTTTGTTCCAGAAACGACGACTGCCGGAGCAAATCCTTCTGCACCTGTTAGCTCAACTCAAAT AGCACCTAGCATAACACTTCCATTCATTGCACCTCCCTCATCTCCTGCATCTTTCTTTCAATCAGAGCATTCCTCGACTG CACAATCACCAGTTGGCATATTCTCAGTCACTTCGGTGTCCGCCAGCATGTACTCTCCTAGTAACCCTGCCTCAATCTTT GCCATTGGCCCTTATGCCAATGAAACCCAATTGGTTTCACCACCAATTTTCTCAGCATCATCCACTGCTCCTTTCACTCC GCCTCCTGAGTCGGTTCACTTGACCACACCTTCTTCACCTGAAGTGCCATTTGCTCACCTACTTGACCCCAACAACAACA GGAATGGTGGTGAGACTTATCAGAGGTTCCAAATATCTCACTATGACTTCCAATCTTATCAGTTTCATCCCGGAAGCCCG GTCGGTCCACTCATATCGCCGAGATCCGCCATCTCAGCTTCCGGCTCCTCATCTCCTTTCCTTGACTCCGAGTTTCATGC TGGTGACTTTAGAACAACAGAACCAGTCAAGCTTATTAGCTTGGATAAACTCTCATCAGCTTATGAAAAGCAAAACCAAA AGTCAAATCAAGGTTCTGGTTCTCTAACCCCAGATGCTGGTTTTCTTCCAAAACACTGGGTTTCTGAGATCAAAATGTCC CCGCGCCCAAGCAATAATCGCGCGAGTGAGATTAGCTTAAATCACCGAGTCTCATTTGAATTATCTGCACAAAAAGTACT GAGAACTGTGGAAAACAAGCAAGCAGCTTCATCATGGTCTAAAGTTGTGCCAAAATTGAAAAATGATGCAGCAACAGAAG ACAAGGAAGAAAATGCAAGAGAAACTGAGGGGAATGACAAACAAGTTGTTGCTGAAACTCCCAATGGAGATGATGCAAAA GCTCATAAGAGGAATGAGTCCATAACCCTTTCTTCATCATTTGCTAGAGAATTCAACTTTGATAATGCAGAGGGGGGAGA TTCTAATGCTCCCCATATTGTAGTTGCTGACTGGTGGGCTAATGAGAAAGTTGCCGGGAAGGAGGGAGCAGAGTCCTCCA AGAGTTGGTCTTTCTTCCCCATGATTCAATCTGGTGTCAACTAGCTCCCGTTTGAATACAGGCTTATTGGAGCTTATCTA CCGGAAAGAGCACTGAATAAGTTCCAATCGGTGCTGTTTGGAAACAATCCAAACGGATTGCTAACCAAATACTTGCATAT AGTGGCTTCTTGTTCAGAGTTGCAAGAATTTGGCATTGGTTTTTTGATTTTGTGCCATGCTTCTACTTAGCAGAACCTAC CCGCACAAGTTCAAAATTGAATGGTGGTTGATCAAGAATTCAAGATTTCTAAGTCTAATTAACACGTTGATGGGGTTCTT TTTTGAAGTCAATGGCCCCCAAAAAAAATCATGGAGTTTGCAGAATACTATATGTTTAGTAGATTTGTAGTTCTTACTAA GTATGAGTTAGAATAGCTGTACATTTTTAGAATCTGTACTCTGTTGATCTCATATGTACTTCAGTTGACAACAACTTAGT GATGCCAGTTATAATAAGGAAAAAGTTTGATTCACTCTTCCATTTCTTTGTGCCTAGTTTTTGTATTCAATTTTACATGA AACTAAATTTATCTAAAATCAATGACAAATTCTAAAACACACTAAGATATGATTGTGTGTAATACAAGAATGGCAAAATA TGCTATAGTTGACTTGACATAG
CDS sequence (LotjaGi4g1v0428000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGAGCTCATGGGAATGATGGCAGAGCTTCTGTCACCAATACTTTGGACACTATAAACGCTGCTGCTTCTGCCAT AGCCTCTGCTCACACCCACAATCGCACTTCTCACCATCCTCTTGAGAAGAAAAGATGGAGAAGCTGGTTGAACATATCCG GGTGTTTTGGATATCACAACAAGAACGCAAGGCGCGTTGGGGACGCTGTCTTTGTTCCAGAAACGACGACTGCCGGAGCA AATCCTTCTGCACCTGTTAGCTCAACTCAAATAGCACCTAGCATAACACTTCCATTCATTGCACCTCCCTCATCTCCTGC ATCTTTCTTTCAATCAGAGCATTCCTCGACTGCACAATCACCAGTTGGCATATTCTCAGTCACTTCGGTGTCCGCCAGCA TGTACTCTCCTAGTAACCCTGCCTCAATCTTTGCCATTGGCCCTTATGCCAATGAAACCCAATTGGTTTCACCACCAATT TTCTCAGCATCATCCACTGCTCCTTTCACTCCGCCTCCTGAGTCGGTTCACTTGACCACACCTTCTTCACCTGAAGTGCC ATTTGCTCACCTACTTGACCCCAACAACAACAGGAATGGTGGTGAGACTTATCAGAGGTTCCAAATATCTCACTATGACT TCCAATCTTATCAGTTTCATCCCGGAAGCCCGGTCGGTCCACTCATATCGCCGAGATCCGCCATCTCAGCTTCCGGCTCC TCATCTCCTTTCCTTGACTCCGAGTTTCATGCTGGTGACTTTAGAACAACAGAACCAGTCAAGCTTATTAGCTTGGATAA ACTCTCATCAGCTTATGAAAAGCAAAACCAAAAGTCAAATCAAGGTTCTGGTTCTCTAACCCCAGATGCTGGTTTTCTTC CAAAACACTGGGTTTCTGAGATCAAAATGTCCCCGCGCCCAAGCAATAATCGCGCGAGTGAGATTAGCTTAAATCACCGA GTCTCATTTGAATTATCTGCACAAAAAGTACTGAGAACTGTGGAAAACAAGCAAGCAGCTTCATCATGGTCTAAAGTTGT GCCAAAATTGAAAAATGATGCAGCAACAGAAGACAAGGAAGAAAATGCAAGAGAAACTGAGGGGAATGACAAACAAGTTG TTGCTGAAACTCCCAATGGAGATGATGCAAAAGCTCATAAGAGGAATGAGTCCATAACCCTTTCTTCATCATTTGCTAGA GAATTCAACTTTGATAATGCAGAGGGGGGAGATTCTAATGCTCCCCATATTGTAGTTGCTGACTGGTGGGCTAATGAGAA AGTTGCCGGGAAGGAGGGAGCAGAGTCCTCCAAGAGTTGGTCTTTCTTCCCCATGATTCAATCTGGTGTCAACTAG
Protein sequence (LotjaGi4g1v0428000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRAHGNDGRASVTNTLDTINAAASAIASAHTHNRTSHHPLEKKRWRSWLNISGCFGYHNKNARRVGDAVFVPETTTAGA NPSAPVSSTQIAPSITLPFIAPPSSPASFFQSEHSSTAQSPVGIFSVTSVSASMYSPSNPASIFAIGPYANETQLVSPPI FSASSTAPFTPPPESVHLTTPSSPEVPFAHLLDPNNNRNGGETYQRFQISHYDFQSYQFHPGSPVGPLISPRSAISASGS SSPFLDSEFHAGDFRTTEPVKLISLDKLSSAYEKQNQKSNQGSGSLTPDAGFLPKHWVSEIKMSPRPSNNRASEISLNHR VSFELSAQKVLRTVENKQAASSWSKVVPKLKNDAATEDKEENARETEGNDKQVVAETPNGDDAKAHKRNESITLSSSFAR EFNFDNAEGGDSNAPHIVVADWWANEKVAGKEGAESSKSWSFFPMIQSGVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 450 | 441 | 2.4E-151 | – | |
| PANTHER | 10 | 450 | 441 | 2.4E-151 | ||
| MobiDBLite | 350 | 389 | 40 | - | – | |
| MobiDBLite | 351 | 371 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0428000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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