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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0429700 |
| Transcript ID | LotjaGi4g1v0429700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 40S ribosomal protein S10; TAIR: AT4G25740.1 RNA binding Plectin/S10 domain-containing protein; Swiss-Prot: sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1; TrEMBL-Plants: tr|I3T869|I3T869_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0429700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80388912..80391730) extracted from Lotus japonicus Gifu genome v1.2.
ACCACACAGGCCTATTAGGAATAAAACCAGAGACATGAAAAAAGAAACATATATAAACGAGTTCTTATATAAAACCGATA GCAGTTTTAGGGTTTATAGCAATAGCAATTGCAGTGTGAAGCTCGTCACCTCCATCGCCGGCGCCGCACCTCGCAACCAT GGTACGTTCTCGAATTTCTCCATTGTTTTCGATTTCCGGGATTCATGTGCGTTTTCATTTTGTTCAGATCATTTCGGAGA AGAACCGTAAAGAGATCTGCAAGTACCTCTTTCAAGGTTACGATTCATCATCATTGTGATTGCGTCGTCGTGTTTCATAA TCTCTAGATTTCTGATGTGTTTCGATTTGTGTTGTTTAGAGGGAGTTTGCTTTGCGAAGAAGGACTACAACTTGGCGAAG CACCCAGACATTGATGTGCCGAATCTGCAGGTGATTAAGCTCATGCAGAGCTTCAAGTCTAAGGAGTATGTCAGGGAAAC CTTTGCTTGGATGCACTATTACTGGTTCCTCACCAATGATGGCATTGAGTTTCTCAGAACCTATTTGAATCTCCCATCTG AAATTGTGCCTGCTACCTTGAAGAAACAGGCTAAGCCACCTGGTAGACCATTCGGTGGTCCACAGGGTGATCGCCCTAGG TGATTTTTCATTTCTCTTTTTTCAGATTGTGTTGTGTGTTTTTGTGTGTGTGATTCTGTGGCTGATTGGAATTTGGCTGA TTTGAAACAGGGGTCCACCACGCTTTGAAGGAGAACGTAGGTTCGGTGGTGACCGTGATGGGTACCGTGGAGGTCCCCGA GGTGGTGACCTTGGAGGTGACAAGGGAGGAGCTCCTGCTGACTACAGACCTTCTTTTGGGGTAATCTTACTGCTTCTCTT TGTGTTTCATGTTTACTATAATTGTGTTTGTAAACTGTTTGTGGCCTGGTTTTTGTTATATTTGTTTGCTAGCTTGTGTT AGATTAGGTTCAATTCAATGAGGTTAGAATGTTGTGTGTTTAGAGTATAAAGGAAGCCTAGTTTTCATTATATTTGTTAC TTGTTAGTTAACTTGTGTTAGATTAGAATCAATTAGGTTAGAATGATGTGTGCATATAGTATGAGGGAAGAAATGATTTA TATTTTGTTTACTGGTTTACAATTTGCAGTTCCCAGTTATGGGCGACTTTTATTGATTGTGAAAAGTCTAGTACTAAGCC TAATGTGAGGAAATTATGATATCTATCTCTTAGTTTTGTATCAAACATTATATCCTATCAACTGCTGCTAGTTCTAGGCT TTCCTGCGGATTTGCTCATGGATCATTTGAGTTTTCAGCTTGCAAGTTAACTTGGATTATTTGGACAAGACTAATCCAAT TATGTTCATTTTGATCCTTTAGTTATGTCTAGAACTAGAAGTACCCAATTTGTAAACTTGTTTTTATACTGAGCACAATG GAGTCTTCGATCTTTTTGAAACTGGCTTTTCTTAATAGGAAAAGACTTTTGTTATAATGATCAATGTATCCTAAATGTTC ACTACTATGTTTGCATGTGCTCTATTCAATTTGGTAGGAACTAGTTCCTATCATGTACAAAGTATTGTCCCTTTACTTTA GATCAAGTGCCCCTCCATCTTTTTAAGTTTTCCTAAATTGGTTTGCATTTTGCAGGGTCCTGGTGGAAGGCCTGGCTTTG GCCGTGGATCAGGTGGCTTTGGAGCACCAACCAGCTCAAATGATGCTTAAGCATAATGGTTTCTGCTTTGTTTTGGCCTA GTTTTGTTAACTAGATTGGCTTGTCGTTGTAGTCAATGATAGACTCCCCCGCCAGAAAATTGTTTTATCGAACATGGCAC TTTATATTTTTATTATTAATGAAGATTTTGAATTTTGAATGTTTCTGCTACTCATATTTTTCTGTGTGCAAAATTTGAGC AATTACTTTTGTTCTGATTTCACTTGTTGGAATTGTTGTCGAGCTTGGAATAAAGTGAAGTCGTTAATGCTCAATGATCA TCATAGAAAAAACATGGTTACTCGATAAACCTTTCAAACAGCCATAATGTAGTGTGATAGTGTCTTTTCCATTCAGGAAA AAAGTAATCCTGCCAGGATTATCTCACAATCAGTCTTGCGTTCACAATTCTGCATCAAACACCTCTCTTTTTAGGATAAA GGTTGTATACTTGTATGAAGAGGTAGATTGGATGTTAGAGAACTTGTTTCATTAGTGTTTAAGTTAGAAAGTTTGCTTGC TGCTTTGCATCTAGGACAAATGATGGGGTTTATATATTATTCGGGCTCAAATGATATAAGGAGGATTGTATGATGTTTTT AGTAGTCTTAGTGGGGAGATATGGAGGGTTGTATGTTTTCAGTAGTTTCAGTGGGTGAATTTGGTTTCTTATTGTATTAC ACATCATTTTCTTTTTCATTCCATTTCCACCATTTTTTTCCTAATCATATCTTTTATTTTGTGTGTTTTGCAGCATAAGG ATTTCAATTGGCCTGTTTAACTCTGCAGCTCTATTATCACAATTTTTCTTTACATATAACCAGTTAATTTTTAAATCACT TTTTAGAAGATTCTTCTCTTAAATGCCTTATGATCAATATTCTTTCTCTGGCCTCTTGGTTCAAATTTATTTGTTTTAAT TAAATGAAAAAAATTATTTGTTTTAATTAAATGAAATTGTAAGAACTATATGAATGTAGCAAAAGTATGTCTGTTTGGAG GTTTAATTTTCAAGTTTTGTGAATGAAAAAAACTAACCTACCACATCGCTGGCCTCAGGGAGAAAAATTAATCTCGGACT ATGGAGATAACATGATCAA
CDS sequence (LotjaGi4g1v0429700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCATTTCGGAGAAGAACCGTAAAGAGATCTGCAAGTACCTCTTTCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTA CAACTTGGCGAAGCACCCAGACATTGATGTGCCGAATCTGCAGGTGATTAAGCTCATGCAGAGCTTCAAGTCTAAGGAGT ATGTCAGGGAAACCTTTGCTTGGATGCACTATTACTGGTTCCTCACCAATGATGGCATTGAGTTTCTCAGAACCTATTTG AATCTCCCATCTGAAATTGTGCCTGCTACCTTGAAGAAACAGGCTAAGCCACCTGGTAGACCATTCGGTGGTCCACAGGG TGATCGCCCTAGGGGTCCACCACGCTTTGAAGGAGAACGTAGGTTCGGTGGTGACCGTGATGGGTACCGTGGAGGTCCCC GAGGTGGTGACCTTGGAGGTGACAAGGGAGGAGCTCCTGCTGACTACAGACCTTCTTTTGGGGGTCCTGGTGGAAGGCCT GGCTTTGGCCGTGGATCAGGTGGCTTTGGAGCACCAACCAGCTCAAATGATGCTTAA
Protein sequence (LotjaGi4g1v0429700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIISEKNRKEICKYLFQEGVCFAKKDYNLAKHPDIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNDGIEFLRTYL NLPSEIVPATLKKQAKPPGRPFGGPQGDRPRGPPRFEGERRFGGDRDGYRGGPRGGDLGGDKGGAPADYRPSFGGPGGRP GFGRGSGGFGAPTSSNDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 105 | 105 | 1.0E-46 | ||
| PANTHER | 1 | 170 | 170 | 4.7E-121 | ||
| Pfam | 3 | 94 | 92 | 5.0E-43 | ||
| MobiDBLite | 91 | 178 | 88 | - | – | |
| MobiDBLite | 112 | 132 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0429700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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