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LotjaGi4g1v0430300.1

Overview

Field Value
Gene ID LotjaGi4g1v0430300
Transcript ID LotjaGi4g1v0430300.1
Lotus japonicus genome version Gifu v1.2
Description WRKY family transcription factor; TAIR: AT4G23550.1 WRKY family transcription factor; Swiss-Prot: sp|Q9SUS1|WRK29_ARATH Probable WRKY transcription factor 29; TrEMBL-Plants: tr|A0A0L9VPZ7|A0A0L9VPZ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0430300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:80445623..80447933) extracted from Lotus japonicus Gifu genome v1.2.

AATGGACACTATTTTCATGTATTCAGCACCGAATTGCTGAATAAATATCCGTTCCACACTTCCACTTGCACAGATTTTGA CTTTTTTGTTAGTCAGCTCAATTGAAAATGCTATTGCCAGTTTGAAGCTTGAAACTTGAAGAAGCAAACAACACATATTC AAAAAAACCACCCAATAATGGTTACCATTCCATGTTATATAAATATATCCACACATAGGTTGACATTATTAATTCAAAAC TCATCCTTGCAATAATATCTCACTTCCATTGTAATTTTATATAGCCATCTTTGTCTTAATTTTTCACATGATGAATGAGC TTGCTTGCTTAATGGATTGGGATTTGGAAGCAATTGTCAGAGGATGCAACAACGGTGAAGCCTCAGCAACCACCATGATG GACCATCAGGATCATAACTTTTCTCATCATTTCTTCTCTGAACAAGATGAGCTTCTTGGCTTTAATTTTCCTGAATTCTC AGAAGCAACGTGTGTCCTTGATGAATTGGAAGAGCTTTACAAACCTTTCTACCCAGTTTTGCACCCTCTGAATTCATTAC AGAGTACCATAGTCACAAGTTCCCTACCTATCCCAAAAGAAGTCAAAGAACTTAAAGCATCATCATCAGAGAAAGCAGCT TCACAAGATTTGCAAGTTCCCTCAGTATCTAAATATAAAAGAGGGTAAGTTGATTGCTCATCCAATCAAATAAAAACCTT CATACTTCAACGAATTCAAGTTTTTTTTTTTACTTGGTTAAACGTGCAACAAGAATCAAACTAAACTCTCATACCATATT AAGAACAATTATTCAGAAAATTTTAGTTTTTGGATGAAAATACATTTACTATTTAATATTTGACATTATGTAATACTTAT GATTTGCTGAACTGGACCTTGTGGTCTAGATTTACCCCGCAGTGTAGACATAGAAACTTCCTCGCCCTGCAACAAAGTGC TTTACCTTTTGAGGCCCGATCTCAAGATCTACAGGCTAAGTACCAAATATACCTAGTACTAACCCTTCAGGTCTTCGGAT CGAGTCATGCAAGGAAAAGTATTTGCATACGTGTGGGGACGAGGAAGTTTCCTATGTGTAAACTGTAGGGAAAACCTTGA TACTTGTGTGAGCTCAGTTAAAAAGGCAAATCTCAGATGTTACCTAAGTTGTTTCATATATTCCAAGTTATTTGAATTTA TAAAATCTTTTCAAAGATGTGTAAGTCCTGCAAAGCTAATGATGTGTCTGTTGGTTTAATTCTCAGCAAGAAAAACCAGA ACAAGAGTGTGGTGAAGAAACAAGTGAAGGGAGGTGATGGTCTTGCTGATGAGTGGGCTTGGCGTAAATATGGACAGAAA CCAATAAAGGGTTCCCCTTATCCTCGAAGCTACTACAGGTGCAGCAGCACCAAAGGATGCTTGGCAAGGAAACAAGTTGA AAGGAGCCATTTGGATCCTGCAGTTTTTCTAGTTACCTACACAGCAGAACACAATCATTCCCAGCCAGCAAGGAAAAACT CATTAGCAGGAACCACAAGGAATAAGAACATTTCCCAAAACACATGTTCCTCAAATTCCTCATCATCAGCAGTAACTCAC TCTCCAATAAGGACACCCAATTTGGTTGTTGTGGCCTCATCCAACATTAAAGATGAGGTTGGGACAAGAGTGCAACAAAG TGATAAGGGTTTGGAGAAAGAGGAAGATTTTCTTGAGTGGTTAGATGGTGATGCTGGAGGTGCTACATTTGGTGATGGTT GGATCCCAAGCTCAGAGCTTGAGGATCTCATAGGATTTAAGTACCAAGAACTTGTAGATGGCTGTGATTTCACTGATGGT TCTGATGATCGATGACATGTTTGAATCAACTTCTTTTTTATCCAAATCAGTTTTAAAATTAGCATAGGGGCCAGAAGCTT CTTCCCTGATTCTGACTTCAGAGTCAATTCTAAAATAATTTCCAAACATGTACTTAGTTCCTTGGCCACATGCATGTGGA TTATATTTCATTTTCTTGGATTGTATAAAAGTAGAATAGAAAAACATGCATGACATGCATATAGCCATTATTGGTCCTGT GCAAACAATTGTATCAACAAAACCTGTGCTACACTGGTTTTTTAAGCATTGAAAAAGTTGAGTTAAGGATTTATTCTCAC AATGGTTCTTTTGGTTTATACATTTTCAGTAATCATAAGTTCAACAAGTTTGCAATAAAACTGGATCCTAACATAATGAC CATGTGATAACCAATTAAGCAGTGTACTTACAATTTATTTACCAAATGAGCTTCTATTTTATTGTTCCTTG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0430300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGAATGAGCTTGCTTGCTTAATGGATTGGGATTTGGAAGCAATTGTCAGAGGATGCAACAACGGTGAAGCCTCAGC AACCACCATGATGGACCATCAGGATCATAACTTTTCTCATCATTTCTTCTCTGAACAAGATGAGCTTCTTGGCTTTAATT TTCCTGAATTCTCAGAAGCAACGTGTGTCCTTGATGAATTGGAAGAGCTTTACAAACCTTTCTACCCAGTTTTGCACCCT CTGAATTCATTACAGAGTACCATAGTCACAAGTTCCCTACCTATCCCAAAAGAAGTCAAAGAACTTAAAGCATCATCATC AGAGAAAGCAGCTTCACAAGATTTGCAAGTTCCCTCAGTATCTAAATATAAAAGAGGCAAGAAAAACCAGAACAAGAGTG TGGTGAAGAAACAAGTGAAGGGAGGTGATGGTCTTGCTGATGAGTGGGCTTGGCGTAAATATGGACAGAAACCAATAAAG GGTTCCCCTTATCCTCGAAGCTACTACAGGTGCAGCAGCACCAAAGGATGCTTGGCAAGGAAACAAGTTGAAAGGAGCCA TTTGGATCCTGCAGTTTTTCTAGTTACCTACACAGCAGAACACAATCATTCCCAGCCAGCAAGGAAAAACTCATTAGCAG GAACCACAAGGAATAAGAACATTTCCCAAAACACATGTTCCTCAAATTCCTCATCATCAGCAGTAACTCACTCTCCAATA AGGACACCCAATTTGGTTGTTGTGGCCTCATCCAACATTAAAGATGAGGTTGGGACAAGAGTGCAACAAAGTGATAAGGG TTTGGAGAAAGAGGAAGATTTTCTTGAGTGGTTAGATGGTGATGCTGGAGGTGCTACATTTGGTGATGGTTGGATCCCAA GCTCAGAGCTTGAGGATCTCATAGGATTTAAGTACCAAGAACTTGTAGATGGCTGTGATTTCACTGATGGTTCTGATGAT CGATGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0430300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMNELACLMDWDLEAIVRGCNNGEASATTMMDHQDHNFSHHFFSEQDELLGFNFPEFSEATCVLDELEELYKPFYPVLHP LNSLQSTIVTSSLPIPKEVKELKASSSEKAASQDLQVPSVSKYKRGKKNQNKSVVKKQVKGGDGLADEWAWRKYGQKPIK GSPYPRSYYRCSSTKGCLARKQVERSHLDPAVFLVTYTAEHNHSQPARKNSLAGTTRNKNISQNTCSSNSSSSAVTHSPI RTPNLVVVASSNIKDEVGTRVQQSDKGLEKEEDFLEWLDGDAGGATFGDGWIPSSELEDLIGFKYQELVDGCDFTDGSDD R
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR32096:SF87
2 281 280 5.5E-94 –
PANTHER
PTHR32096
2 281 280 5.5E-94 –
Gene3D
G3DSA:2.20.25.80
123 207 85 9.3E-28
IPR036576
ProSiteProfiles
PS50811
140 206 67 31.284
IPR003657
SMART
SM00774
145 205 61 6.4E-37
IPR003657
SUPERFAMILY
SSF118290
145 206 62 1.44E-25
IPR036576
Pfam
PF03106
147 203 57 8.5E-26
IPR003657
MobiDBLite
mobidb-lite
203 238 36 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0430300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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