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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0433600 |
| Transcript ID | LotjaGi4g1v0433600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT4G11070.1 WRKY family transcription factor; Swiss-Prot: sp|Q8H0Y8|WRK41_ARATH Probable WRKY transcription factor 41; TrEMBL-Plants: tr|A0A151SV62|A0A151SV62_CAJCA Putative WRKY transcription factor 41; Found in the gene: LotjaGi4g1v0433600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80771086..80775053) extracted from Lotus japonicus Gifu genome v1.2.
TTAATATGTTTATGTAGTGGGAGATACATTTTGTAACATGTTTATTTTTTTCTTGTCTTTCATGGATGTCGTCATCTGTT TGAGAAACAATTGCATGTTTATCCCAATAATGACTTTCTCGGATAACATTATATTTTAAGCATAAGTGATTTTAAAAGCA TGTGTTTAAAGAGCTTGTACAGAATATGATTTATACACGAAGAATGCAGAATAGCGAGTAGAGTAGATTGACGATAGTGA GAGTATATATTTTATATCGACTACCATGAAGAAGAGTGAGGCAAAGAGAAGAATCAGGGTAGATGGCAACAACCATAAGT CACGTAAGCAAGTCTCTTATATTTTCCCTCATTCTTTTCAGTAATCGAAAGTAATGATAGTAAAGGGGCCAAACCAAACA AACCACGCGGAATGAGATTTGAATATTCTCCGGTCCCATCTTCTCTTCATAGGAACTCTAGAAGTTTTAATCTTCAATCA AATCATTGCTTGGAAGAACAGAGACCCTACTATCATTAAGACATTAACCAATAATAACTTCACAAAGTGAAGTGGACTTG GTCAGCATTCTACTGGTTAATGGTCTCAGCTGAAAAACTCGTTTTCTTAGTCAAACTTGGACTTTCAACTCTCCAATACT GACTCTTTTCCATTGCTTTCTTTGTTTGCTACTCATAACAACAAAGGATGTAACCCTTTAAATACAAGGCCTCCAATTCC TTCATTCAGCAAACAAAAACCTCAGCTCACCTCAGCTCACCAATCATTACTCATATAGCAGCTACCTAGATTCTGCAGTT TCCAACTTTGCAGAAGAGTGAGAAACTATTGGTTCTAGATAAGAGTGCATTTTCAGAGTAAAGTGAGGCATGCGATAGAT ATCAAGCACCATCATACTCAATCATTATTAAGGTGATAGACAATGCAAAAAATGGAGAATGAGTGGAGCTGGGAGCAGAA CACTCTCATCAATGAGCTCATTCAGGGGATGGAGGTAGCAAGAAGGTTGAAGGAAGACTTGAAGACACCATATTCTGTTA ACACAAGGGATTTGCAGGTGCAGAGGATATTATCTTCTTACGAAAAGGCTCTACAGATTCTAAGATGGAATGAATCAACT TCCAAGTTGCAGACCACGAATGGAGCAACAACTTTGTTATCAGAGTCTCCTCCATTGTCTGCCAATGGAAGTCCTATGAG GGAAGAGATTGATTGGGCTATCCAAGATCACCAGGAGGCTAAACGTGATTCAAAGAAAAGGTGAATTTTACTAGACAGAC TTAGTGCATGTTTAGAACTCCTTATACAATTGATTATAAAGCCAGAATCAATTCCGGGAGAAGCTTATGTAAGTAGCTTC TGCGTTTCAGAATTGATTCTGAGAAATTAAAAGCTAATCCAAACATGCTATTAGTAGCAATTTTCTGCCACAGAAACACT AACAATGTGTATTTTTAAAATTGGTTTCAGAAAGACTATGCCCAAATGGATAGATCAAATCAGAGTGGTCTCTGAGAATG GCCTCGAAGGACCTCATGATGATGGTTACAACTGGAGAAAATATGGTCAAAAAGACATCCTTGGTGCCAAATATCCAAGG TGAGAAAGGACTTCCCCTTATCCTGATCTAGAAAAGAATCACAGGAGTTCTTAAAAATTGCACTTACCTGCATGGGCATC TCATTAACAATCCATTGTGACATTTGCAGAAGTTACTATAGGTGCACCTTCCGCAACACACAGAACTGCTGGGCCACGAA GCAAGTGCAGAGATCGGATGAAGATCCCACAATATTTGACATAACATACAGAGGAAAGCATACCTGTTCTCAGGGAAACG AGGCCGTTCAGCCACACAACTCACCAGAAAAACAACAGAAACTAAACAGTCATAATAATGATAGTCACCATGCAAAGCAA ACAAATGAAAGCCTTACAAAGTTGAGAAACACCTTGACTGTCAGAACAGATCATTTGGGAAATCAAGAAATGTCATGTCC TTTCACTTTCCCTTCCACTTCCTTTGGATGCATGGCACAAGAAAACTACAGCTTGATTCCTTCGGCCTTAGAGAACGATT CCTTCCTGAGCAGCCTTTACCAGACACAACTATTATCTACGACAGGAGCAGAATCAAACTATTTCTCATCTCCAACTTTC CAGCTGAACGAGTTTGACGGGGTCTACAACCAGCCACGTTCTGAATCTGATATTACTGAGATCATTTCCACCAACACATC AGCCACCAATTCTCCAATTCTGGATTTCAATTTCTCACTTGATCAAGTGGAACTTGATCCGAATTTCCCCTTCAACACTC CAGGGTTTTTCTCATAATTGTACTCTAGAATAAAAGGAATATTATGAACAATAACCAAACCCTATTCCCCACTAGATAAG ACTAAGTAAAGCAATACCATAATGTCTTATCATGTATCATTCTGAATAATATAAGTTGGACTAAAATAGGACAACTTCAG ACACAGTAGCAGAACTGCAGGACAATGTATCGGCCATGGTAGGACTTACAAATGTCCTTCTAGTTAATATTAGAATTACA ATTTTGGCAAAGCTTAGCACTATTTACTTTCAAATGCTCTAAATTTCCATAGCACAACCTATAACCCACATGTTTAGTAG AAGAGAATAGCAGCCATAAAAATCATAGCAATTCACTAGGGCCAATTAAGATACATGATTATTTATATCATATCAAAGAG AGAGACACAGAGAGAGGTTTTAGAACATTCTTAAAAGTGCAAGCCATTAACCATGCAGCATGAAAGGGAACAGATGAAAT TTGGCAGTGCTGACCAAAGCTTTGTTAGAATTTCATTCCAATTAAGGACATAATTACACAAAATCTAGAATTTCATTCCA TTTTATCTACAAAATAGCTCCAATGCTACAAGGATAGTGAGAGATTTAAGCAGAAGATAACAATTACCAGCTGAAATTCA ATAGGACATCTAAGCCGATAGAGCAAATGCCAACACTGCAGCTAAAATTCAATATATCAAACCTTCTCCTCCTCCTCCTT CAAACTCGACTTAGTACCTGAATTTCCAGATTTCCTGAGACCCTCTCTGAGACCCAAAACTATAAACAAGTTAGTGAGGG TGAGAAGCGACTCAGCCCCACCATGTAACCAGTCTACATTCGACAAAGACGTTCCATAATGCACCTTCGCTGTCAATTCA TGCAACCAAACAAAAATTCAGATACCCTAATCTACCCATTTGGGGTTACACTACACCTATGTGATTGAACTTGACTCACC GTAGATTCCAGCTGGTACTGCTCAAATCAAAGGTGTGGCGTGATAAAATCAATAGCAAAATTAGTATGAAGAAAGGTAAA CGAAATGAAGTGAAAGAAGTAGAGAGAAACTGACTTGTGGCGCCAACAAAGGCGAGCAAGAAGTAGAAACCGAAGAGGGT GAGTTTGGGAGCAGTTTTGGACTTGGTGATGAAGTAGAGGAAAGCGATGTAGGGAAACAAGGAAAACGCGAATAGCTGAG GAGCGATGCTCTGGGAATCAATGACAGGTGCCCATGGATCAACGCCCAATGGCAACGCGCACACGATCTCTCCTCTTCTT CTTCCTCTTCTCTGACTGTGACTGTGACTGTGACTCTTCAATTCTTCCCTGACGCAACATGCATGATAATCGCATTGCAA GAAGCTTGTTGAAGAAGGGTTGACAAATTTGGAGGATGTAGATTGCAAAAGGGGAAAGTTAATAGAAATAGCAGTAGCAG CTACTGCCATTTTCGGAAATGTCTCAAGTTTCTTCTATCTCTGTGTATCTTGAAGATGTTAACATGGGATGAGATGAGAA CCGTTCAATTTCTGAACCGGTTCGCTAAACGGGCTCTGATGGGCCGCTTGAGCCCATGTTGAGAACAGCTTCTTTATGCT TGTATCATTGTGAGTCAGGCCCACTTGAAATGCAATGACATTTGTCCA
CDS sequence (LotjaGi4g1v0433600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAAAAATGGAGAATGAGTGGAGCTGGGAGCAGAACACTCTCATCAATGAGCTCATTCAGGGGATGGAGGTAGCAAG AAGGTTGAAGGAAGACTTGAAGACACCATATTCTGTTAACACAAGGGATTTGCAGGTGCAGAGGATATTATCTTCTTACG AAAAGGCTCTACAGATTCTAAGATGGAATGAATCAACTTCCAAGTTGCAGACCACGAATGGAGCAACAACTTTGTTATCA GAGTCTCCTCCATTGTCTGCCAATGGAAGTCCTATGAGGGAAGAGATTGATTGGGCTATCCAAGATCACCAGGAGGCTAA ACGTGATTCAAAGAAAAGAAAGACTATGCCCAAATGGATAGATCAAATCAGAGTGGTCTCTGAGAATGGCCTCGAAGGAC CTCATGATGATGGTTACAACTGGAGAAAATATGGTCAAAAAGACATCCTTGGTGCCAAATATCCAAGAAGTTACTATAGG TGCACCTTCCGCAACACACAGAACTGCTGGGCCACGAAGCAAGTGCAGAGATCGGATGAAGATCCCACAATATTTGACAT AACATACAGAGGAAAGCATACCTGTTCTCAGGGAAACGAGGCCGTTCAGCCACACAACTCACCAGAAAAACAACAGAAAC TAAACAGTCATAATAATGATAGTCACCATGCAAAGCAAACAAATGAAAGCCTTACAAAGTTGAGAAACACCTTGACTGTC AGAACAGATCATTTGGGAAATCAAGAAATGTCATGTCCTTTCACTTTCCCTTCCACTTCCTTTGGATGCATGGCACAAGA AAACTACAGCTTGATTCCTTCGGCCTTAGAGAACGATTCCTTCCTGAGCAGCCTTTACCAGACACAACTATTATCTACGA CAGGAGCAGAATCAAACTATTTCTCATCTCCAACTTTCCAGCTGAACGAGTTTGACGGGGTCTACAACCAGCCACGTTCT GAATCTGATATTACTGAGATCATTTCCACCAACACATCAGCCACCAATTCTCCAATTCTGGATTTCAATTTCTCACTTGA TCAAGTGGAACTTGATCCGAATTTCCCCTTCAACACTCCAGGGTTTTTCTCATAA
Protein sequence (LotjaGi4g1v0433600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKMENEWSWEQNTLINELIQGMEVARRLKEDLKTPYSVNTRDLQVQRILSSYEKALQILRWNESTSKLQTTNGATTLLS ESPPLSANGSPMREEIDWAIQDHQEAKRDSKKRKTMPKWIDQIRVVSENGLEGPHDDGYNWRKYGQKDILGAKYPRSYYR CTFRNTQNCWATKQVQRSDEDPTIFDITYRGKHTCSQGNEAVQPHNSPEKQQKLNSHNNDSHHAKQTNESLTKLRNTLTV RTDHLGNQEMSCPFTFPSTSFGCMAQENYSLIPSALENDSFLSSLYQTQLLSTTGAESNYFSSPTFQLNEFDGVYNQPRS ESDITEIISTNTSATNSPILDFNFSLDQVELDPNFPFNTPGFFS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 363 | 360 | 2.4E-103 | – | |
| PANTHER | 4 | 363 | 360 | 2.4E-103 | – | |
| Gene3D | 122 | 198 | 77 | 1.2E-28 | ||
| ProSiteProfiles | 130 | 193 | 64 | 22.435 | ||
| SUPERFAMILY | 134 | 197 | 64 | 6.02E-26 | ||
| SMART | 135 | 197 | 63 | 3.2E-41 | ||
| Pfam | 136 | 195 | 60 | 5.8E-27 | ||
| MobiDBLite | 196 | 233 | 38 | - | – | |
| MobiDBLite | 196 | 214 | 19 | - | – | |
| MobiDBLite | 215 | 229 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0433600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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