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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0434600 |
| Transcript ID | LotjaGi4g1v0434600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-responsive transcription factor; TAIR: AT1G64380.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9C7W2|ERF61_ARATH Ethylene-responsive transcription factor ERF061; TrEMBL-Plants: tr|I1JAC9|I1JAC9_SOYBN AP2-EREBP transcription factor; Found in the gene: LotjaGi4g1v0434600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80813306..80814766) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATTTCATTTTTCAACCTGCAATAAAGCTAGCCACATCTTCTCCTTCCAAAATATATATGCTCCCCCTTTCTTTACC TCTCGATCATGACATTTCTTCACATAACACACATCTTTCCTTGATCACATGCATCTTCTGTTAATTAGAGATTTACTTCT TGCCTTCCTGCATATTTTACAGCATTCATCATTTTACTTCTCAACTTGAGGGACAAAGTTTTTTCTGTCAAAAACATGGA AGGAGTGCAAGAAAGAAACACAGAGGTTGAACTCCATGATGGTGTTAACATTGGATCATGTTTATCAAATCTCATACTAT CAAGCGGAACAAACACCCTCGACTCGATTTTCTCTCATTGCGAGCCACGGCCACCAAACGCAACTACCATCACTAAGTTG GGACCTATAACCTCTTTGGGATCCTCAGTGTACCATCGCCAAAGAGATATTCTGCAAAAATTCTACGAAGAAACTCGGTT GAACCGGTCCTCTGTTTCCTCTGCTTCCCCTGTTTTCTCTGTTTTCAGTTCCTGGAAGAAAACATACCGGGGAGTGAGAC AGAGGCACTGGGGAAAATGGGTCGCTGAGATTAGACTCCCTCAGAATAGGATGAGGGTGTGGTTGGGAACCTATGATACT CCTGAAGCTGCTGCTTATGCTTATGATTGTGCTGCTTACAAGCTCCGAGGCGAATACGCGCGTTTGAATTTCCAAGACAT GATGATGAACCCAACAAACTTAGATTCTGAGAGATTGAATGCTTTGAAAGTTTCCGTGGATGCTAAAATTCAAGCCATAT GTGAAAAGATGAAGAAGAGGGACAAGCCCAAGAACAAGAAGCGTGCTTCCAAGAAAGTGAACAGTGAGAATCAGAAGAAG ATAAAGTCATTGCCTTGTTGTTCTCCATCTTCGTTGCTCTGTTCTGGTGTTTCAGGGGATGGAATTTGCAATGCTACATG CTCTGTTTCAGAGGAGTGTCCAATAATGGTAATAGAGGATCACTCGGATTTTCAGGATTGTTCATTGGAAAGGGTACCGT CTTTTGATCCTGAGTTGATTTGGGAGGTTTTGACTAATTAATTTGGAAGAATGGTCCCGATATTTGAACTCTGACGAGAT TGATTCAATCAACATGCGTGTTTTGACGGTTTTTTACCGCTAGAACATGCATGTGTAGATTGAATGTCACGGGTTCAAAA ATCACTCATGTTAGGAGGAAACATGTTGCATGTTACTTCTGACTGAATGTAGCAGAAGTTAGAAATAGAATCTGAGTTAT ATTTATTTAAGGTTACCCCAACGAACATATAATAATAGAGATGGTGAAGACGCCAATGTAAATGGAAATTTAATGTTGTA CTATTGTGCTTAGCTGGGGCTTGTTCACGGTGTTTCAGATTGGGTGAACCAGAACAGTGTAAGCCTGCAGATGCAGCCCC ATTACAGTTACTCCTTCAAAT
CDS sequence (LotjaGi4g1v0434600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAGTGCAAGAAAGAAACACAGAGGTTGAACTCCATGATGGTGTTAACATTGGATCATGTTTATCAAATCTCAT ACTATCAAGCGGAACAAACACCCTCGACTCGATTTTCTCTCATTGCGAGCCACGGCCACCAAACGCAACTACCATCACTA AGTTGGGACCTATAACCTCTTTGGGATCCTCAGTGTACCATCGCCAAAGAGATATTCTGCAAAAATTCTACGAAGAAACT CGGTTGAACCGGTCCTCTGTTTCCTCTGCTTCCCCTGTTTTCTCTGTTTTCAGTTCCTGGAAGAAAACATACCGGGGAGT GAGACAGAGGCACTGGGGAAAATGGGTCGCTGAGATTAGACTCCCTCAGAATAGGATGAGGGTGTGGTTGGGAACCTATG ATACTCCTGAAGCTGCTGCTTATGCTTATGATTGTGCTGCTTACAAGCTCCGAGGCGAATACGCGCGTTTGAATTTCCAA GACATGATGATGAACCCAACAAACTTAGATTCTGAGAGATTGAATGCTTTGAAAGTTTCCGTGGATGCTAAAATTCAAGC CATATGTGAAAAGATGAAGAAGAGGGACAAGCCCAAGAACAAGAAGCGTGCTTCCAAGAAAGTGAACAGTGAGAATCAGA AGAAGATAAAGTCATTGCCTTGTTGTTCTCCATCTTCGTTGCTCTGTTCTGGTGTTTCAGGGGATGGAATTTGCAATGCT ACATGCTCTGTTTCAGAGGAGTGTCCAATAATGGTAATAGAGGATCACTCGGATTTTCAGGATTGTTCATTGGAAAGGGT ACCGTCTTTTGATCCTGAGTTGATTTGGGAGGTTTTGACTAATTAA
Protein sequence (LotjaGi4g1v0434600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGVQERNTEVELHDGVNIGSCLSNLILSSGTNTLDSIFSHCEPRPPNATTITKLGPITSLGSSVYHRQRDILQKFYEET RLNRSSVSSASPVFSVFSSWKKTYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTPEAAAYAYDCAAYKLRGEYARLNFQ DMMMNPTNLDSERLNALKVSVDAKIQAICEKMKKRDKPKNKKRASKKVNSENQKKIKSLPCCSPSSLLCSGVSGDGICNA TCSVSEECPIMVIEDHSDFQDCSLERVPSFDPELIWEVLTN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 281 | 281 | 1.5E-101 | – | |
| PANTHER | 1 | 281 | 281 | 1.5E-101 | – | |
| Gene3D | 102 | 162 | 61 | 2.2E-28 | ||
| SMART | 103 | 166 | 64 | 2.2E-31 | ||
| SUPERFAMILY | 103 | 161 | 59 | 2.16E-22 | ||
| ProSiteProfiles | 103 | 160 | 58 | 22.748 | ||
| PRINTS | 104 | 115 | 12 | 9.4E-10 | ||
| CDD | 104 | 161 | 58 | 6.32033E-22 | ||
| Pfam | 104 | 153 | 50 | 5.7E-13 | ||
| PRINTS | 126 | 142 | 17 | 9.4E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0434600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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