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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0436900 |
| Transcript ID | LotjaGi4g1v0436900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TSA: Wollemia nobilis Ref_Wollemi_Transcript_1629_832 transcribed RNA sequence; TAIR: AT3G61920.1 UvrABC system protein C; Swiss-Prot: sp|Q2YBI1|FPG_NITMU Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|I3S125|I3S125_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0436900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80993183..80998885) extracted from Lotus japonicus Gifu genome v1.2.
GAAAAAAATCACTTTCTATTCAATCTTATGTTGAACCAAATCTATTCATATTTTCCATTTTTTCTCACCACATCACTAAT CACTCTTCTATTAGCCTTATACTCACAAGTATACGAATATGATTCTCACACTTAATTTCTACATCAACCAAGGTATTGGA GATAAGGGAAGACTATGATGGAGGCAAGAGTGATGAGTGAATAATCCATAATCCTTAATTAAATACAATTTCAGGACCTT ATTATACAGAAGTAGATAATAAACAACTATGAGTTCATATTACAATTTTTTTAACAAAAAAGCACTATACTATGGTCTAT GGAGATGTAACACACAATTTGATTGATTGAAATATCAAACTTAAGCACAAGCAGGGCAATGCACTAACCCATTCTCATTA CACTTAGGACACCTCTCAATCTGATTCACATCACTCAACACCAACTTGCAACTTCCACCACAATCCAAACAAGGCACAAA CCTGGCCCCACCACACCCATCACAACCATATCTCCCTACCCCTCTCTCCACACGTGTCGCATTCAAGATCCGACCCAACC GACCCGACTCATTCAGCTCCACCAACTCCTCCAACCCGCCCAAATACCTCCCCTTCACAAACACCCTCGGCAGCGGCGCC ACCGCCACCACCACCTCCTCCGCCAGCAGCTCCTTCACCTCTTTCAGAAACCCGGAGTGGAGCGCCACGTCACGCTCGTC CACCACCACTCTATGCCCCTCCAGCACCTCCCTCGCCCGGTTGCAATCCTCGAACGTCTTCCTCACTCCACGCAACGACG TCGTGTAAATCACCACCGCGTCGGCGCCTCCCGGCGGGGATTTCTCCGGGAACTGGCTCAGCGGGTCCCGCCGAAGCCTC TCGTAAACCGATTCGCTCTCTTCCTTCTTCCGCTCTTCCATGTCTCTCTTTATGAAGATGTTGTCCTTCAATTTGCTCGA GGTTTTGATCAATTTGATTCGATTCTCTTCTTCAACCTCACTGTTCTTCTTGCTTGTCTCAATTGGTGATTTCTTCAACT CTGGTTTAGCGTTCGGGGTTGATTTCGCGTCTAACTCTTCCAGTGTGTGGAAGGAGGCATTCTTGCGTAAGGGTTGAGAT TGGTTCTGTGGTGGTGGTGTGGAGGGTGGTTGTGGTTGCGATTGCGGTGGTTGTGGTGGTTGTTCAACGATGGGTTTGAG GTCATGGAGGACCTTGCTAACTTCGTCCCAGGATTGAGGGGCTTCGGTGGCTTTTTCCAGGAGGTGGAGGATAGGGGCAG GGAGTGAGGGTTGTTTTGTGTCTTGGGTGTGAAGTGGGTCGGTGGCGGTGTTGTTGAGGTGTTTCAGCCATGGCTCCTCG ATGGAGTTGATGTCGAACACCGCGAAGCTCGTCGGAGGTGGGCGGTACACCGCTGCTGTGGCGTCGATACCCTTGGAGGA GGCACACCCCATTTTTCGAATGCTAAGGTTAGTTGCTTATCTTATCTTATAGAACAGTTTGAAGAAATGCATGCATGTTT GTTCTATTATATGGGCTGAAAATAAGATTAGAAATTAAGAATGATGTGTAGATATAACTAATTGTTGTGGCCAGGGAACA TTTGTCTAGTCACTGATATTTATCATGCTATGTTTAATTTTAGACATATTTAGCATACTAGTTAGTTAAAGATGTAATCC AGGGACAACCATGCATGTGCATGTGGTAGGATAGGAGCAAGCAAGCTAATTTGATGATTTTTGTGTGTGCGCACTAAGCA TTTCATAGTCGGCAATCATAACATTAATTCGCTTGAGATTTCGAAATTACATTAAATCAATTTGTTTATCTCAATAAATC ATTTTCTATCCATAGTTCCATACTATTCAGAGATTAAAAAAAGAGATTACATTTTCAATTAAATACTTAAATAACTGAGT TATATCTACTAAATGTAGTTTGACTTGTTGGCAAGGTAATTTAATGATGATGATAGTTCTAATGCAATACGTAAGAATGC GTGGTGCTTGTTTGATAGAGAATATTTATGTGGCATTGGTAAAGGGATTAGATTATCCATCTGGATTAATTTGTATTGGA GTGAGGGTGGGAGAGGTGGAGGCCTTAAAATGAATGGCTGGCGCTTGTGTTGTTTACGTGGACCAGCAAGGCTTTGCCAC CTCGAGTGATTAGTGAATGAAATTTTGTTAAGTTAGGTCCTACACAGACACAGACAGTGTGTCAATTCTTATTCTTGTGT TCTTGGAAATGGTTGTCTGCCTCTGCTACTGCTAGTGACATTCGTGGTTATGCGGGAACCTTTGGATGCTTGTCATTTTG GGCCAAGACATTTAGGTTCACTCGAGTCTCTCATTTTTAAATATATCCCAATATATCTATATTTGTTTTTCTTTACGCAA ATACTAGGAGATCAAGTTAGAATATGAACACTGTTCTTCCAGATGAGCTCATTGGTGTAGGAAGAAATAACTACATTAGG GGAAAATATATGTAAAAGACACTCTAATAATTAAGTTTGTTCAAAATTAGAGAGAGTTTCAATCTAAAAGAGCAGTAAGA GAGTAAAATGAGTTGTGGCTAACTTACAATGTGATCAAACTTGTATAAGTTGCTCATTTGATCAATGGTATAAGCGGTTA ACCGTTTGCAAACATGTTTTTTACCAAAGAATTCTAAAATTAAAAAGTATCTTTCTCAATCGGACCTAGGCAGTTAGAGA TTCGTTTTTTGGATTGTCAAAAATACTTACTAAATAAGCAGAAGAAAAGAGTAATCCCCTAAAGAAATAGGAAGAAGGAC AGTGGGAATGATTCTATCAGTCTTTCTAAAAGTAGCAATCATCAAATCAGTCAACGGCGGAGAAGGAGTAGCGACAGTAG GCCTTAGATAGCACATGTTCTGCCTTCAAAGGAGTTGAAAAAAACAGTATATCTTCTTTTATTCAAGCAGCAATAGTTAT AGCTGAGACGCTGAGTCACATTCTGTTCATTCTTACCCCTAACTACCGGACTCCATTGGTTAAGTTGGGGCAGGAACTAC TATCGAACTACAATGACATGCCGGGCCGACCCTCCTTCTAGAACCTTATTGCTTTCCCAAACACATTTTATAAATAGAGT TACTCATATCTCATCATTTTTTACACAATAGGTGACAATATTGAGTTTTTTATTTCTTAAGTTTCTCGTTTATTGAGACT TTTATATCTCTATTCACTCCAATTATTTAGAGTTTCTTAAGTTTCTCGTTTAGTGAAAGCAATGATAATGATGGTTCGGT GAAAATCCTTTCCGTACATCTCCATCATCATGGCCTAATCATCATAGGAATTCCGAGCAGGCTATAAATATCTATCATTC TTCTCTTTAAATTGTAGAAAACCTTCCATTTATTTTTTCCAAGTTTGATTCTCTACAGAACTTGTCCGAAGACGTTTGGA TAGAGACTGAAGATTTTTGTAAAAGGTATATGTGATATTTTCTTAGGTCGGAGGACCTTCTAATAATGTTTCTAATTTGA ACCTTGTAGGTTCAACCTCTATGGGTAATTTGAAAGATGTCTACCTCATTATCTCAGCCTCTTTTTTTTGGTCAATATTA TTTCAGCCTCCTTTTTTTTTTGGTCATTACCTCTTCAACCATTGAGTTGGTCCTCACTTGAACGACTCCCGGGTTAAATG GGCCAGTCACGGCCCACATCCATATATACACATGACTCTGCTTGCAACCCAACTCAAAACCCATAGATATTCTGACAAAA AAAACCCATAGATATAAAAATGCACTTGAAATTACTTATCGTGATTTTATTTTGGCACTTTCGTCCCGTGACATATTTGT TTCAATAAATGAAAGCTATGGTTGAATTAATCTTCTTGTACTCACATGCATTTATCACACCCATAAATTTAAGAGGTACC ATCTCCATATATGGAATTTTCGGATAAACCATTGATTCCAATACCTATTATCATCCCTAAACACTATCCTTTAGCTCAGG GGTCCATGCTTGCATTTTCCCCTTTCGTTTCAAAGTGTTATGACCCCACTGCCATTAACATGGTTGAAAATTCATGCATA TTGGACATGGAGAGAGATTGGGAGAGTCACGGATTAGATGCTTTTATTTGAAATATGTACAACGACCAACTGAGAGTAGG TGGAAGTAGTTTACCTCACATGAAACTAATGAAAGGTTAATTCAAGTGGTACATGTATATCTTTAAAAAAATTTACGGTT CGAGTCTGGGAAAAAAATTCTTGTTCGGAGACTCATACTTGGATATAAGTGTTCAGTGACTCGAACAATATTGTCTCCCG TGAAGATAATTGACACGGATATTTGAAACCCTGCCTGCTTCTACAATGTTTGTTTCTGAATATTAAATCTGAGAATCTAC CTCTTATTCTGTTTTATTCTGTTGTTTTCACTCAGGATCACTCCTCCTCACAGTTCCAACAAAACAATTCCCCAACGGTC CAATTTCACATGGGCGCCGCTAGGATAAAAAACATGGATACAAATAAACAAACTAGTCCAAGTAGGAGACAGTAACGTGC CATGACACACAATGAGGACAAATTTTTGGTAAGCACAAGGGATTTCAAACTTGAAATATCAAATATATAAAGCTTGGAAC CAGAGCTCTCAATTGAAAACATTGAAGTGAAGTGAACCATCATTGAAAAATGGGGAATTGCTCTATCAAGGGTGGTACCA CTGGAGAATGTCACCACTCTATCCGAGTTCTCAGTGACAGTGGTGTCATTCTACAATTCAAAGATCCTAAAACAGTTGGC CAAGTGCTCCAACAGTACCCTGGTTATGGTGTTTTCCTCCAGGGTCATGCCTCATCACCTTTGCTGGAGCATGAGAGCTT AAGCTATGGTCTTCTCTACTATCTTCTTCCACTGAAGAAGGTGCAGGTGGAACAAAAAAGTAGCTGCAGTGATGGAGTTT CAGTGTCTGATTATGTTGAGAATTTGTCAAATGGTTCAGCTCTTGAAGTGCTTCCATCAGCTCAGAATGGGGTGTGGAGA GTGAAGTTGGTGATTGATACAAGGCAACTTGAGGAGATTTTGTCAGAGCAGGTGAATACTGAAGCTTTGATTGAGAAGAT GAGAATGGCTGCAACTACATGCTCTGCTACTAGCCCTGCCAGGAGCAGCAGAACCATGAGCATTTGGAAAGTGGGGTGGA AGCCAACACTCTTCAATGGAAAATCTTGTAAGAGCATTACTGCTGCAGGATCAAATTTGGATTTGGGTTCTTGTTAAGGA GAGTGTTTCTACCTATGGAGAATGACTCGATGACCATGAGTATGTTAGGTTTCCCTAGCAACATGGTGTATGAACTTGAC TGTTATCAAATATTGTTTAGGAATTCTAGATACATCTAAGCTAACTGCTACTACTTTAGGCTTTCATCTGTGAATATGTT TGGACGACTAGTCTAAATATCAATATATGCTCTGGATGTAATGTAAGGATTAGTAAACACTTTTCAAGTGTTGGTGGTAT TTCTAGATTTTATTTTCTGTTTCTTATTTGCCATAGGAAGAGTTCATAAGAATAAACTATAATGACTAATTATCAACACT TTGAAAGTTTACAAGAGAAATGAATTCAGGCTTTGATTGTGTGAGACTGAGTCGATCTAAAGTTGATGATTAGGGTAAAG GTGCAACGAGAATACAAACATGC
CDS sequence (LotjaGi4g1v0436900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAATTGCTCTATCAAGGGTGGTACCACTGGAGAATGTCACCACTCTATCCGAGTTCTCAGTGACAGTGGTGTCAT TCTACAATTCAAAGATCCTAAAACAGTTGGCCAAGTGCTCCAACAGTACCCTGGTTATGGTGTTTTCCTCCAGGGTCATG CCTCATCACCTTTGCTGGAGCATGAGAGCTTAAGCTATGGTCTTCTCTACTATCTTCTTCCACTGAAGAAGGTGCAGGTG GAACAAAAAAGTAGCTGCAGTGATGGAGTTTCAGTGTCTGATTATGTTGAGAATTTGTCAAATGGTTCAGCTCTTGAAGT GCTTCCATCAGCTCAGAATGGGGTGTGGAGAGTGAAGTTGGTGATTGATACAAGGCAACTTGAGGAGATTTTGTCAGAGC AGGTGAATACTGAAGCTTTGATTGAGAAGATGAGAATGGCTGCAACTACATGCTCTGCTACTAGCCCTGCCAGGAGCAGC AGAACCATGAGCATTTGGAAAGTGGGGTGGAAGCCAACACTCTTCAATGGAAAATCTTGTAAGAGCATTACTGCTGCAGG ATCAAATTTGGATTTGGGTTCTTGTTAA
Protein sequence (LotjaGi4g1v0436900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNCSIKGGTTGECHHSIRVLSDSGVILQFKDPKTVGQVLQQYPGYGVFLQGHASSPLLEHESLSYGLLYYLLPLKKVQV EQKSSCSDGVSVSDYVENLSNGSALEVLPSAQNGVWRVKLVIDTRQLEEILSEQVNTEALIEKMRMAATTCSATSPARSS RTMSIWKVGWKPTLFNGKSCKSITAAGSNLDLGSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 176 | 176 | 4.6E-62 | – | |
| PANTHER | 1 | 176 | 176 | 4.6E-62 | – | |
| Pfam | 1 | 174 | 174 | 3.3E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0436900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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