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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0437200 |
| Transcript ID | LotjaGi4g1v0437200.3 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-oxoacyl-[acyl]-carrier-protein] synthase; TAIR: AT5G46290.1 3-ketoacyl-acyl carrier protein synthase I; Swiss-Prot: sp|P52410|KASC1_ARATH 3-oxoacyl-[acyl]-carrier-protein] synthase I, chloroplastic; TrEMBL-Plants: tr|V9N3I8|V9N3I8_COCNU Beta-ketoacyl-ACP synthase I; Found in the gene: LotjaGi4g1v0437200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81012620..81013761) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGAGCTTGGAGAGTGCAACAAAAAGAGGAGCCACAATAATAGCAGAATATCTGGGGGGTGCCATAACATGTGATGC TCATCACATGACAAACCCAGGGCCTGATGGACTAGGAGTTTCAATTTGCATATGGAAGAGTTTAGAAAATGCTGGGGTTT CCCCTGAAGAGGTAAGAAATAGAATTCTGTAGTTTTTCACGTCTCTTAGCATAGGTCACTTTAAAATATCTATGTAGCAT TAATCACTTTTTTCTAAGTTTACCCTTAATATTTAACGCTCCATACTCAATAATCTAATGCTTATCACTAAATTCTTTTA GTTTTCTTATAGGAGAGAGTTAAAAAAAATATCATTTTCTTATTTAAGACTAACAAATGTGTACGAATTAGTTACATGTA ACTTATAAATAAGAACAGAGGAAGTAATAACAAGCAACCAGGATCAAAATTGGCACATTCCTCTAAAGCGAGTTCAGATT CTCATGTTCATGTAAAGCTGATGAATCCTGCTTTGTACAGGTGACCTATATCAATGCTCATGCCACATCAACACTAGCAG GTGACCTGGCTGAGGTTAATGCAATCAAACAAGTTTTTAAGGACACATCAGAATTGAAAATGAATGCCACTAAGGTAAGA AATTTGTTTACTTTTTAAATATTTCAGAACCTCAACAGCATCCTCTTTTTTACCTTGAATCTTTTCATGACATTTTCTTC CTGTTTCAGTCAATGATTGGTCATGGTCTTGGGGCTTCTGGTGGCTTGGAAGCTATAGCAACTATCAAAGCAATAACAAC TGGCTGGTTGCACCCAACCATTAACCAAGATGTACTTTCCTCAGCCAGAAACTCATCCTATTAATCAAATACTACGTTTT ATTTATTGATTCCCTTTATCACTTGATTTACTCATTTTTCCTCAGAACTTGGAGGATTATGTTACAATTGACACCGTCCC TAACGTCAAGAAGCAGCATGAAGTTAATGTTGGTATGTACTATATCTCTGTGCAAATTCTGGTAACAATGTAAAAACCAA TTAATGTTTCTGATCTTTGGTGCACTTTCTGCAGCTATCTCCAACTCATTTGGGTTCGGTGGACACAATTCAGTTGTTGT CTTTGCTCCATTCAGGCCCTAA
CDS sequence (LotjaGi4g1v0437200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGCTTGGAGAGTGCAACAAAAAGAGGAGCCACAATAATAGCAGAATATCTGGGGGGTGCCATAACATGTGATGC TCATCACATGACAAACCCAGGGCCTGATGGACTAGGAGTTTCAATTTGCATATGGAAGAGTTTAGAAAATGCTGGGGTTT CCCCTGAAGAGGTGACCTATATCAATGCTCATGCCACATCAACACTAGCAGGTGACCTGGCTGAGGTTAATGCAATCAAA CAAGTTTTTAAGGACACATCAGAATTGAAAATGAATGCCACTAAGTCAATGATTGGTCATGGTCTTGGGGCTTCTGGTGG CTTGGAAGCTATAGCAACTATCAAAGCAATAACAACTGGCTGGTTGCACCCAACCATTAACCAAGATGATTATGTTACAA TTGACACCGTCCCTAACGTCAAGAAGCAGCATGAAGTTAATGTTGCTATCTCCAACTCATTTGGGTTCGGTGGACACAAT TCAGTTGTTGTCTTTGCTCCATTCAGGCCCTAA
Protein sequence (LotjaGi4g1v0437200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESLESATKRGATIIAEYLGGAITCDAHHMTNPGPDGLGVSICIWKSLENAGVSPEEVTYINAHATSTLAGDLAEVNAIK QVFKDTSELKMNATKSMIGHGLGASGGLEAIATIKAITTGWLHPTINQDDYVTIDTVPNVKKQHEVNVAISNSFGFGGHN SVVVFAPFRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 169 | 169 | 4.0E-104 | – | |
| PANTHER | 1 | 169 | 169 | 4.0E-104 | ||
| SUPERFAMILY | 1 | 165 | 165 | 3.29E-44 | ||
| Gene3D | 1 | 169 | 169 | 1.1E-45 | ||
| Pfam | 16 | 128 | 113 | 1.4E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. |
Expression pattern of LotjaGi4g1v0437200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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