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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016039
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 263 results. Now displaying 1 of 6 with 50 rows per page. This search has taken 5.710s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0065089.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max] gi|356535335|ref|XP_003536202.1| chr0 22620129 22623120 -
3 domain predictions
1 GO term
Lj0g3v0075349.1
n.a. beta-ketoacyl-ACP synthetase I [Glycine max] gi|351724925|ref|NP_001238610.1| chr0 28549642 28555155 +
3 domain predictions
1 GO term
Lj0g3v0078429.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 7-like [Glycine max] gi|356557495|ref|XP_003547051.1| chr0 30186893 30187987 +
3 domain predictions
1 GO term
Lj0g3v0088069.1
n.a. PREDICTED: 3-oxoacyl-[acyl]-carrier-protein] gi|502086144|ref|XP_004488123.1| chr0 35920951 35923454 -
3 domain predictions
1 GO term
Lj0g3v0092509.1
n.a. PREDICTED: 3-oxoacyl-[acyl]-carrier-protein] gi|502114770|ref|XP_004495046.1| chr0 38532436 38537083 +
3 domain predictions
1 GO term
Lj0g3v0092509.2
n.a. PREDICTED: 3-oxoacyl-[acyl]-carrier-protein] gi|502114770|ref|XP_004495046.1| chr0 38532436 38537083 +
3 domain predictions
1 GO term
Lj0g3v0107259.1
n.a. Chalcone synthase [Medicago truncatula] gi|357450737|ref|XP_003595645.1| chr0 46244202 46246188 +
3 domain predictions
1 GO term
Lj0g3v0129319.1
n.a. RecName: Full=Chalcone synthase; AltName: Full=Naringenin-chalcone synthasegi|19593|emb|CAA48227.1| naregenin-chalcone synthase [Medicago sativa] gi|1705839|sp|P51080.1|CHS7_MEDSA chr0 58519706 58519939 -
3 domain predictions
1 GO term
Lj0g3v0129329.1
n.a. n.a. chr0 58520172 58521064 +
3 domain predictions
1 GO term
Lj0g3v0129339.1
n.a. chalcone synthase 4 [Astragalus mongholicus] gi|118772026|gb|ABL14038.1| chr0 58520172 58521064 -
3 domain predictions
1 GO term
Lj0g3v0190609.1
n.a. PREDICTED: 3-oxoacyl-[acyl]-carrier-protein] gi|502086144|ref|XP_004488123.1| chr0 93187345 93189885 +
3 domain predictions
1 GO term
Lj0g3v0190609.2
n.a. PREDICTED: 3-oxoacyl-[acyl]-carrier-protein] gi|502086144|ref|XP_004488123.1| chr0 93187345 93193412 +
3 domain predictions
1 GO term
Lj0g3v0197249.1
n.a. PREDICTED: 3-ketoacyl-CoA thiolase 2, peroxisomal-like [Glycine max] gi|356575164|ref|XP_003555712.1| chr0 96189682 96191792 +
3 domain predictions
1 GO term
Lj0g3v0197249.2
n.a. PREDICTED: 3-ketoacyl-CoA thiolase 2, peroxisomal-like [Glycine max] gi|356575164|ref|XP_003555712.1| chr0 96189751 96191792 +
3 domain predictions
1 GO term
Lj0g3v0203389.1
n.a. chalcone synthase [Pueraria montana var]. lobata] gi|968896|dbj|BAA09918.1| chr0 100818811 100819107 -
3 domain predictions
1 GO term
Lj0g3v0216389.1
n.a. 3-ketoacyl-CoA synthase [Medicago truncatula] gi|357472603|ref|XP_003606586.1| chr0 109893009 109895188 +
3 domain predictions
1 GO term
Lj0g3v0220359.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 12-like [Glycine max] gi|356550239|ref|XP_003543495.1| chr0 112806946 112809060 -
3 domain predictions
1 GO term
Lj0g3v0241719.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 5-like [Glycine max] gi|356574442|ref|XP_003555356.1| chr0 125448578 125449989 -
3 domain predictions
1 GO term
Lj0g3v0246159.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 4-like [Cicer arietinum] gi|502149248|ref|XP_004507452.1| chr0 127501504 127503203 +
3 domain predictions
1 GO term
Lj0g3v0259119.1
n.a. PREDICTED: 3-ketoacyl-CoA thiolase 2, peroxisomal-like [Cicer arietinum] gi|502146749|ref|XP_004506590.1| chr0 134611772 134615912 -
3 domain predictions
1 GO term
Lj0g3v0292159.1
n.a. PREDICTED: 3-oxoacyl-[acyl]-carrier-protein] gi|356523620|ref|XP_003530435.1| chr0 151636675 151646204 +
3 domain predictions
1 GO term
Lj0g3v0324009.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 4-like [Vitis vinifera] gi|359475340|ref|XP_003631663.1| chr0 169299962 169302625 +
3 domain predictions
1 GO term
Lj0g3v0348239.1
n.a. PREDICTED: chalcone synthase-like [Glycine max] gi|356495881|ref|XP_003516799.1| chr0 182758148 182758996 +
3 domain predictions
1 GO term
Lj0g3v0348249.1
n.a. PREDICTED: chalcone synthase-like [Glycine max] gi|356495881|ref|XP_003516799.1| chr0 182759237 182759657 +
3 domain predictions
1 GO term
Lj1g3v0116610.1
n.a. chalcone synthase [Pueraria montana var]. lobata] gi|968896|dbj|BAA09918.1| chr1 1421644 1421886 -
3 domain predictions
1 GO term
Lj1g3v0116620.1
n.a. RecName: Full=Chalcone synthase; AltName: Full=Naringenin-chalcone synthasegi|19593|emb|CAA48227.1| naregenin-chalcone synthase [Medicago sativa] gi|1705839|sp|P51080.1|CHS7_MEDSA chr1 1424473 1424796 -
3 domain predictions
1 GO term
Lj1g3v0116650.2
n.a. PREDICTED: chalcone synthase [Glycine max] gi|356538729|ref|XP_003537853.1| chr1 1429923 1431682 -
3 domain predictions
1 GO term
Lj1g3v0128900.1
n.a. RecName: Full=Chalcone synthase; AltName: Full=Naringenin-chalcone synthasegi|218013|dbj|BAA01075.1| chalcone synthase [Pueraria montana var]. lobata] gi|116396|sp|P23569.1|CHSY_PUELO chr1 1570466 1570832 -
3 domain predictions
1 GO term
Lj1g3v0129000.1
n.a. chalcone synthase 4 [Astragalus mongholicus] gi|118772026|gb|ABL14038.1| chr1 1571613 1572153 -
3 domain predictions
1 GO term
Lj1g3v0129290.1
n.a. RecName: Full=Chalcone synthase 4; AltName: Full=Naringenin-chalcone synthase 4gi|609612|gb|AAA73938.1| chalcone synthase, partial [Trifolium subterraneum] gi|1705834|sp|P51086.1|CHS4_TRISU chr1 1586339 1592181 -
3 domain predictions
1 GO term
Lj1g3v0129310.1
n.a. root-specific chalcone synthase [Senna alata] gi|19880035|gb|AAM00231.1|AF358431_1 chr1 1586557 1586676 -
3 domain predictions
1 GO term
Lj1g3v0129320.1
n.a. n.a. chr1 1586864 1592885 -
3 domain predictions
1 GO term
Lj1g3v0898770.1
n.a. chalcone synthase [Vitis rotundifolia] gi|223953610|gb|ACN30003.1| chr1 11394597 11395589 +
3 domain predictions
1 GO term
Lj1g3v0898850.1
n.a. PREDICTED: chalcone synthase 2-like [Glycine max] gi|356515949|ref|XP_003526659.1| chr1 11450570 11452641 +
3 domain predictions
1 GO term
Lj1g3v1798580.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 10-like [Glycine max] gi|356507127|ref|XP_003522322.1| chr1 21648839 21652690 +
3 domain predictions
1 GO term
Lj1g3v1798600.1
n.a. beta-ketoacyl-CoA synthase [Arabidopsis thaliana] gi|62318951|dbj|BAD94049.1| chr1 21652791 21653054 +
3 domain predictions
1 GO term
Lj1g3v1914960.1
n.a. beta-ketoacyl-coa synthase family protein [Populus trichocarpa] gi|224089128|ref|XP_002308642.1| chr1 22788959 22791028 -
3 domain predictions
1 GO term
Lj1g3v2626180.1
n.a. chalcone synthase 1 [Astragalus membranaceus] gi|325911190|gb|ADZ45299.1| chr1 30506726 30508521 -
3 domain predictions
1 GO term
Lj1g3v2626190.1
n.a. chalcone synthase 1 [Astragalus membranaceus] gi|325911190|gb|ADZ45299.1| chr1 30506865 30508521 -
3 domain predictions
1 GO term
Lj1g3v2626200.1
n.a. chalcone synthase 1 [Astragalus membranaceus] gi|325911190|gb|ADZ45299.1| chr1 30510792 30512374 +
3 domain predictions
1 GO term
Lj1g3v2626210.1
n.a. chalcone synthase 1 [Astragalus membranaceus] gi|325911190|gb|ADZ45299.1| chr1 30510792 30512844 +
3 domain predictions
1 GO term
Lj1g3v3716640.1
n.a. RecName: Full=Chalcone synthase 2; AltName: Full=Naregenin-chalcone synthase 2gi|20826|emb|CAA44934.1| naregenin-chalcone synthase [Pisum sativum] gi|231784|sp|Q01287.1|CHS2_PEA chr1 42788444 42788780 +
3 domain predictions
1 GO term
Lj1g3v3716810.1
n.a. chalcone synthase 1 [Astragalus membranaceus] gi|325911190|gb|ADZ45299.1| chr1 42804092 42804415 +
3 domain predictions
1 GO term
Lj1g3v3918040.1
n.a. Chalcone synthase [Medicago truncatula] gi|357508471|ref|XP_003624524.1| chr1 45721334 45723528 -
3 domain predictions
1 GO term
Lj1g3v3918050.1
n.a. Chalcone synthase [Medicago truncatula] gi|357508471|ref|XP_003624524.1| chr1 45721533 45723528 -
3 domain predictions
1 GO term
Lj1g3v4667830.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 5-like [Glycine max] gi|356574442|ref|XP_003555356.1| chr1 55296511 55298940 +
3 domain predictions
1 GO term
Lj1g3v5060470.1
n.a. 3-ketoacyl-CoA synthase [Medicago truncatula] gi|357512625|ref|XP_003626601.1| chr1 61818763 61820797 +
3 domain predictions
1 GO term
Lj2g3v0461500.1
n.a. Hydroxymethylglutaryl-CoA synthase [Medicago truncatula] gi|357500885|ref|XP_003620731.1| chr2 6543004 6549367 +
3 domain predictions
1 GO term
Lj2g3v0856560.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 10-like [Glycine max] gi|356507127|ref|XP_003522322.1| chr2 13307903 13311754 -
3 domain predictions
1 GO term
Lj2g3v1154110.1
n.a. 3-ketoacyl-CoA synthase [Arachis hypogaea] gi|269854053|gb|ACZ51240.1| chr2 18155943 18157976 -
3 domain predictions
1 GO term