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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0437700 |
| Transcript ID | LotjaGi4g1v0437700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Beta-amylase; TAIR: AT4G17090.1 chloroplast beta-amylase; Swiss-Prot: sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic; TrEMBL-Plants: tr|K7L4L5|K7L4L5_SOYBN Beta-amylase; Found in the gene: LotjaGi4g1v0437700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81090963..81094385) extracted from Lotus japonicus Gifu genome v1.2.
ATATCAAAAGTTGCATGTATGAAATCTGATGCAAAAGTATGAAAAGTTGAAACACAAAATCAGAATCATATATATAAAAA GAATACAAAGCTTAAACTCAAAACAACACTATTATAAGATGAGTAAATAAGCATCAAAGATAAGGAACTACATTCATTTT TTTCCCTTTTCCAACAAGAAGAAATCAATAAAAGTCCAAAAGTTTTTATTTTCTTACAAATGATATATAATCTCTCCTCC ACACCCTGGCTCAGTACAGTGTAGTATGCACTCTTCACTGCTCTCACTGTTCGTGACACACTCTCTCTCGCAGTGCAGAA ATTCGAAACCCTAACTTGCAATCAATGGCGATCCCATCACAATCAACCGCGAGTTTCTCACCTTCCTTCATCTCCACTCG GACCGATTTGACTCACCTCACACGCTTCCCATGCCGAGTCACCATGACTCAGTTACGCGGAACCCGAACTCGCCGACTCG CCGTCTCTTCTCGTCTCAACTCGTCCCTATCCTCGTCCGTCTCGCCGGACAACAACGGCGATGTTCCCTACGAGCTCCAC CATGACCTTTCCCCGCAGCGTCGGAGGCGGGAATCGCCGGTGTTCGTGACGCTTCCAGTGAACACCGTCGGTGTAGAGGG CAGGATTTGGAGGCCCAAAGCTATGATGCAGTCCCTCAAGGCGCTCGCCGCCGCGGGTGTGGAAGGCGTGGCTTTGGAGA TTTGGTGGGGGTTGGTGGAGAGGAATGAGCCTAGGGTTTATGATTGGAGAGGGTATCGTGAACTGGTCATGATGGCTAGC ATGTGTGGTCTCAAGGTTCGTGCTGTTCTTGCGTTTCACCAGCATGGAACAGTCCCTGATGATCCCAATTGGTAATCTTC ACTCTGAATTTTCAATTAGATATAGTTATCTTTGTCTATAATCTCTATGATAGATAATTAGATATGATTAGCTTTCAAGT GGTTACTGCAATTATGCTTCGAGAAAAGGTGGTTGGTTTATTAGCTGAGTTTGTGAAAGGCAGGGGATTTTGATTTAATA TGTGTTTAAGTCTATAAGCGGATTAAGCGCTTGTTTTGTTTGCAGTTTAGATCAGCAATGCAATGCTGAATTCAACTGTT TTGATCATGACATGGTACTCATTTTATCCTTTTAGGTGCTGTTTCTTGCAAAATCATTGAACCTATGCTATGGCCCTTGA AATGACATAATAAGTAGGTACCTGAGGCTCACTGTGTTTAAGAAATTAATATGAAAGACGATGTTTGTGTTGGCAGTTGG CAACGGACTCTTCAGCTTTTTCATATATTTTTCCGCTAAATGGCACTGATGGATCCATGTAATTTATCTTACCTAGTAGG ATAAGGCGTGATTGTCATTGTTGTGATTGAGGCTTTAGATACTTGATTATTGGTTGCTTGTCTTTCACATCTCCAGAAAC AAACAGACCTTTTACTAGTATCTTTTGGTAGTTTGTAGGCAAATGATCATTCTGGCTTATAATTTTATCATTTAATATTG TGTGGGCATGTTGCCTTGATATAAGTAGAGTTGATTTAGTTTATGACTTTATGTTGAATAATTAATACTACTTTTTTTTT CTTGTAATAAGCCTCATACTGTAGAAGTTTGTTCCCATCATGTAGGATACCGCTTCCTCTCTGGGTGCTTGATGAGATGA ACAAAGATCCAGACTTAGCATATTCTGACAGATTTGGAAGAAGAAATGCTGAGTACATTTCCCTTGGATGTGATATCCTT CCTGTGCTACGTGGACGGTCTCCTATTCAAGCATATGCAGATTTTATGCGGAGTTTCAGGGATACTTTCAGGCCCTCACT TGGTGTTATCATTATAGTAAGGTTCTTAGGATGATTTTGGGATGTTATAGTCCAATGAAGATTCAAATTCCAAGATGTTA TTATCAGATGTTCATTGTAGTTTGTGTAACACTGTTCATTTTGCAGGGAGTACAGATTGGCATGGGTCCTGGTGGTGAAC TAAGATATCCTTCATTCTCTTTCCAAAAGCCAAATTTGGCTTGGCCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAG GTAGGATGAAAATTCAGTTTTATCTATTAGTTTATAGAGTTGTAGAATTGTTATTGCTTTGTGTTCTGGGAGACCGGTCA CAAACAATTTGCATACTTTATGATGTCCTATGATTCATATCATGTTAAACTTTCTTCTTCTCATGATTGCCACCTGCCAG TATATGCTTGCTTCTCTAAACGCTTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGCACTGG AAGTTTGATGCGAAATCCTGAGCATACTGAATTCTTTAAAAATGGGGATGGTTCTTGGAACACACCATATGGTCAATTTT TCCTTGAATGGTACTCAGATATGCTGCTAATGCATGGCGAGAGAATTTGTAGGGAAGCAGAAACTATATTTAGAGGTACT GAAGTCCATATATCAGCAAAAGTGGCTGCTATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGTTAACAGCAGG CTACTATAACACTTCAAACAGGGATGGGTACTTACCCATTGCTCGCATGTTTAGTAAATATGGATTCTCATTGTGCTGCT CTTGTTTTGAAATGCAAGATGAAGTAATGAAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTAGACAGCTTTTG CTGACTGCTAGGCTCTGTGACATATCACTCGAAGGTCAAAATTTTTCAACTGATTTGGATGATGATGGGTTTTCCCAGGT GCTAAAGATGTCCACATATTACTCGAGCGGGATTGAGAAGCGTCCCTTTTCGTTCAACTTTGTAAGAATGGGCAGAAATA TGTTTGAACCCCGAAATTGGGATCGGTTTACTCGTTTTGTGAGGCAAATGTCTGATAGGAACATTTTTCGAGCCAGATTA AGTTCTGTTGGTCACAAAAGGTTGAAGACCACACAATGGGCTGCAGAGTTAGGACTATTGTACCAGCTCTACCAGCTCTG TTGAAACTAGGTTCGACCTCTGTTGTAGAAGGTATACTTTACTATTATCACCATCGTTGGATGAAAATCTAATGGCCTTC TGTCTAGTGTTGTAAAATGTGCAGTTACTGCTGATTCTTCGCATGATTCTTTTATTGCTTTTCGGCTACTAGTTACCTCT TTGAATTGCCACATTACACTGCCTTCCAGATTTTTTATATGGTTGGCATGTTATCCACTTGTACCTATATTTCAAATAGA CTGAATATTGAAACCAGATAGTACCTTTTTAATCTCTTGCTCTGTTTAGATGCACTCTTTACATGCTGGTTTTATAGCAT TTGGTGGATGTCTTAGAGTAGACTCTATTCAGATTTCAACTGTAGTGTACATTTACTATCGAT
CDS sequence (LotjaGi4g1v0437700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGATCCCATCACAATCAACCGCGAGTTTCTCACCTTCCTTCATCTCCACTCGGACCGATTTGACTCACCTCACACG CTTCCCATGCCGAGTCACCATGACTCAGTTACGCGGAACCCGAACTCGCCGACTCGCCGTCTCTTCTCGTCTCAACTCGT CCCTATCCTCGTCCGTCTCGCCGGACAACAACGGCGATGTTCCCTACGAGCTCCACCATGACCTTTCCCCGCAGCGTCGG AGGCGGGAATCGCCGGTGTTCGTGACGCTTCCAGTGAACACCGTCGGTGTAGAGGGCAGGATTTGGAGGCCCAAAGCTAT GATGCAGTCCCTCAAGGCGCTCGCCGCCGCGGGTGTGGAAGGCGTGGCTTTGGAGATTTGGTGGGGGTTGGTGGAGAGGA ATGAGCCTAGGGTTTATGATTGGAGAGGGTATCGTGAACTGGTCATGATGGCTAGCATGTGTGGTCTCAAGGTTCGTGCT GTTCTTGCGTTTCACCAGCATGGAACAGTCCCTGATGATCCCAATTGGATACCGCTTCCTCTCTGGGTGCTTGATGAGAT GAACAAAGATCCAGACTTAGCATATTCTGACAGATTTGGAAGAAGAAATGCTGAGTACATTTCCCTTGGATGTGATATCC TTCCTGTGCTACGTGGACGGTCTCCTATTCAAGCATATGCAGATTTTATGCGGAGTTTCAGGGATACTTTCAGGCCCTCA CTTGGTGTTATCATTATAGGAGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTTCCAAAA GCCAAATTTGGCTTGGCCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTAAACGCTTCTG CAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGCACTGGAAGTTTGATGCGAAATCCTGAGCATACT GAATTCTTTAAAAATGGGGATGGTTCTTGGAACACACCATATGGTCAATTTTTCCTTGAATGGTACTCAGATATGCTGCT AATGCATGGCGAGAGAATTTGTAGGGAAGCAGAAACTATATTTAGAGGTACTGAAGTCCATATATCAGCAAAAGTGGCTG CTATTCACTGGCACTATGTCACACAATCCCATCCATCAGAGTTAACAGCAGGCTACTATAACACTTCAAACAGGGATGGG TACTTACCCATTGCTCGCATGTTTAGTAAATATGGATTCTCATTGTGCTGCTCTTGTTTTGAAATGCAAGATGAAGTAAT GAAGAAGATCAATCCAGATGGTAGCCCTGAAGGTTTTCTTAGACAGCTTTTGCTGACTGCTAGGCTCTGTGACATATCAC TCGAAGGTCAAAATTTTTCAACTGATTTGGATGATGATGGGTTTTCCCAGGTGCTAAAGATGTCCACATATTACTCGAGC GGGATTGAGAAGCGTCCCTTTTCGTTCAACTTTGTAAGAATGGGCAGAAATATGTTTGAACCCCGAAATTGGGATCGGTT TACTCGTTTTGTGAGGCAAATGTCTGATAGGAACATTTTTCGAGCCAGATTAAGTTCTGTTGGTCACAAAAGGTTGAAGA CCACACAATGGGCTGCAGAGTTAGGACTATTGTACCAGCTCTACCAGCTCTGTTGA
Protein sequence (LotjaGi4g1v0437700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIPSQSTASFSPSFISTRTDLTHLTRFPCRVTMTQLRGTRTRRLAVSSRLNSSLSSSVSPDNNGDVPYELHHDLSPQRR RRESPVFVTLPVNTVGVEGRIWRPKAMMQSLKALAAAGVEGVALEIWWGLVERNEPRVYDWRGYRELVMMASMCGLKVRA VLAFHQHGTVPDDPNWIPLPLWVLDEMNKDPDLAYSDRFGRRNAEYISLGCDILPVLRGRSPIQAYADFMRSFRDTFRPS LGVIIIGVQIGMGPGGELRYPSFSFQKPNLAWPHELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGTGSLMRNPEHT EFFKNGDGSWNTPYGQFFLEWYSDMLLMHGERICREAETIFRGTEVHISAKVAAIHWHYVTQSHPSELTAGYYNTSNRDG YLPIARMFSKYGFSLCCSCFEMQDEVMKKINPDGSPEGFLRQLLLTARLCDISLEGQNFSTDLDDDGFSQVLKMSTYYSS GIEKRPFSFNFVRMGRNMFEPRNWDRFTRFVRQMSDRNIFRARLSSVGHKRLKTTQWAAELGLLYQLYQLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 533 | 532 | 1.6E-263 | – | |
| PANTHER | 2 | 533 | 532 | 1.6E-263 | ||
| MobiDBLite | 53 | 80 | 28 | - | – | |
| Gene3D | 76 | 542 | 467 | 5.9E-154 | – | |
| SUPERFAMILY | 84 | 541 | 458 | 9.53E-149 | ||
| Pfam | 87 | 510 | 424 | 4.1E-94 | ||
| PRINTS | 118 | 132 | 15 | 3.4E-39 | ||
| PRINTS | 139 | 157 | 19 | 3.4E-39 | ||
| PRINTS | 161 | 182 | 22 | 3.4E-39 | ||
| PRINTS | 253 | 275 | 23 | 3.4E-39 | ||
| PRINTS | 330 | 349 | 20 | 3.4E-39 | ||
| PRINTS | 366 | 382 | 17 | 3.4E-39 | ||
| PRINTS | 383 | 394 | 12 | 3.4E-39 | ||
| PRINTS | 401 | 424 | 24 | 3.4E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Polysaccharide catabolic process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. | ||
| Molecular function | Beta-amylase activity | Catalysis of the reaction: (1,4-alpha-D-glucosyl)(n+1) + H2O = (1,4-alpha-D-glucosyl)(n-1) + alpha-maltose. This reaction is the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides so as to remove successive maltose units from the non-reducing ends of the chains. |
Expression pattern of LotjaGi4g1v0437700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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