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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0438600 |
| Transcript ID | LotjaGi4g1v0438600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT1G33170.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18; TrEMBL-Plants: tr|A0A072TUV2|A0A072TUV2_MEDTR Methyltransferase PMT16, putative; Found in the gene: LotjaGi4g1v0438600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81172576..81175756) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCCAAGGATTACAATGGATCACCAAAGCATTATAATCAGTTTGAGGCAAAGAGAAATCGTCTCACTTGGATTTTTGG GGTTAGTGGGCTATGCATTTTGTCATACATCATGGGTGCATGGAAGAACACTCCAACACCCTATAACCAATCATCAGATG TCTACACAAAAGTAGATTGCAATACTGGGTCAACTCCATCAGGATCTTTATCAATTCCATCATCAACTTCAAATTTAGAT TTTGAAAGTCACCATTACATTGAGATCAATAGTTCTGGAGGGGTGCAAGAGTTCCCACCATGTGACATGAAATACAGTGA ATATACTCCATGCCAAGATCCAAATAGAGGTAGGAAATTTGACAGGAACATGTTGAAATATAGAGAGAGGCATTGCCCTA CCAAAGAAGAACTCTTGTACTGTCTTATACCTGCTCCACCAAAATATAAGACACCATTGAAATGGCCTCAAAGTAGGGAT TATGCTTGGTATGATAATATTCCACATAAAGAGCTTAGCATTGAGAAAGCTATTCAGAATTGGATTCAAGTTGAGGGTGA TAGGTTCAGATTTCCTGGTGGAGGTACAATGTTTCCACGTGGAGCTGATGCATACATTGATGACATTAATGAGCTTATTC CCCTGAGGAGTGGTCATATCAGAACTGCAATTGATACAGGATGTGGGGTAAGTTAATCTATGTACTCTATCTTCATTTAT GAATATGTCTCTGTTCTTTTCAATTGAAGCAATCTACTGTAAACTTGTGTTTGGAACTCAGGACCTTGTTAATGTGTAAA AGATAAAAACTGCAGAACAAAACAAGCTTGATAAATGTCTAAATTAGTAGTGTTTAGTGTGTGTTTGGAAACCTTGGGAT AAACTCACATTGACCAGAATCAATTTTAAATATAGATATTTGACAATTAAGTTGGAGAATTAATTTTAGTCCTGAAATTA ATTCGCAGAGAAGCTAGAGAGAGTAGCTTTTGCGGTGACATGGTGTGTTTGCATTTAAGTTCAAGTTGACCAAAAGCACA TTCACTCCAATGACACAAGAGACATGAATTGGCCAAAAGCACATTCAAATTGTCGTGGAATGTGCGCTAACAAAAATACA AACACATCCATAATCAATTATGAGATTTTATAATTAGATTTCATAACATTACCAATTTACCATTTAGAAATCATTTTTCC CGTAAATGTATCAAAACATAAATTTCTTCACTTCCAATTCACTTCTACAATAATCAATTTTACTAAAATCAATTCTATCC AAAATCTATTCTCCGACCACTGTGATCCAAATACCCAATTAGTTGGTGATTTATCATTAACTTTTTTCCTGTACATCTCA AATTCCAATTAAATGCTAGGATTATGTATGTGTTACCAACACTTAATACCCTCTTGTGCATCTAATTATATAGGTAGCAA GTTGGGGTGCTTACCTTTTAAAAAGGGACATCATAGCAATGTCTTTTGCACCAAGAGATACACATGAAGCACAAGTCCAG TTTGCATTGGAGAGAGGAGTTCCTGCCATGATTGGCATCATGGCTTCTCAGAGGATGCCATACCCAGCAAGGGCATTTGA TATGGCTCATTGTTCTCGCTGCCTGATACCTTGGCACAAAAATGGTATTCACACTTACATTTTCATGGCATACAATTTCT TTTGGTCATAAATTTTTTTGGAAATTGCTAAAAAGTCTTTTGAAATTAAGAAACAACTAAAGTATATGCAGTTATTAAAA TCATGAAGTAATGATAAAAGTTTTGCCATTTTACTAGTTACCAAGTCTCTATTTTCCACCCTACAGATGGTATGTATTTG ATTGAAGTGGATAGAGTCCTCAGACCAGGTGGCTATTGGATTCTTTCTGGCCCACCTATTCGATGGAAGAAATACTGGAG AGGATGGGAAAGAACGCAAGAGGATTTGAAGCAAGAACAAGATTCAATTGAGGAAGTAGCCAAGCGCATATGTTGGAAGA AAGTTATTGAGAAGGATGACCTCTCCATTTGGCAAAAGCCTAAAAACCACGTTGAATGTATCCAAAACAGACAAGTTTAC AAAACACCACACATATGCCAATCCGACAATCCTGACATGGCTTGGTAATGCTTTAGTCCATTTCTACAATTGGTAAAATC AATTTTAGCATGCACTTTATACTATTAAACTTTTATTGTTCATACCATTTTCTCTATGTATTTAAAAGGTACAAAGATAT GGAAAAGTGCATAACTCCATTACCAGAAGTTAGAAGCTCAGACAAAGTTGCTGGAGGGGAACTAGAAAAATGGCCGGACC GTGCATTCGCCACCCCTCCTCGAATTAGCAGCGGTTCGATACCGAGCATTACTGTAGAGAAATTTCAAAAGGATAATGAA CTATGGAAGGAAAGGATAGCACATTACAAGCGTCTCATTCCTCTCTCTCAAGGAAGATACCGAAACATTATGGACATGAA TGCTTATCTTGGTGGATTTGCAGCAGCCTTATCAAAATACCCTGTGTGGGTTATGAATGTTGTTCCACCAAATCTGGACC ATGACACTCTAGGTGTAATTTATGAACGAGGTTTTATTGGGACTTACCATGATTGGTGTGAAGCCTTCTCAACTTACCCA AGAACATATGATCTCATTCATGCTACTAGTGTAATGGGCATATATCAGGATAGGTAGGCAAAAACATTTGGACATTATCT AACATTTCTGAAAATCGTTGGAAACAAATTACCGACGAGCTCTATACCTACCGAAACGAAGCTGTCGGTAGACCGTTGGA AGTTTTCAATTATCAACGGTTTTCTTACCTTACCGACAGTTTATGACAGTCGGTAATCAACGATTTTCTTGTAGTGTTAG CTTCAATTATTTTCTCACCATGGAATTGTGTGTTATTATGTTTCTGATTGGATGAATTGTTGTGTGTGGCAGGTGCAACA TTACTGTTATACTACTAGAGATGGACAGAATTCTGAGGCCAGAAGGTACTGTTATATTCAGAGATGCAGTAGAGCTTCTG GTGAAGATTAAGGCCATTACTGATGGAATGAAATGGAGAAGCAACATCATGGATCATGAGAGTGGACCCTTTAACCCAGA AAAGATTCTTGTTGCAGAAAAAACTTACTGGACTGGTGAAGCTACACAGAACCAGAGCTAA
CDS sequence (LotjaGi4g1v0438600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCAAGGATTACAATGGATCACCAAAGCATTATAATCAGTTTGAGGCAAAGAGAAATCGTCTCACTTGGATTTTTGG GGTTAGTGGGCTATGCATTTTGTCATACATCATGGGTGCATGGAAGAACACTCCAACACCCTATAACCAATCATCAGATG TCTACACAAAAGTAGATTGCAATACTGGGTCAACTCCATCAGGATCTTTATCAATTCCATCATCAACTTCAAATTTAGAT TTTGAAAGTCACCATTACATTGAGATCAATAGTTCTGGAGGGGTGCAAGAGTTCCCACCATGTGACATGAAATACAGTGA ATATACTCCATGCCAAGATCCAAATAGAGGTAGGAAATTTGACAGGAACATGTTGAAATATAGAGAGAGGCATTGCCCTA CCAAAGAAGAACTCTTGTACTGTCTTATACCTGCTCCACCAAAATATAAGACACCATTGAAATGGCCTCAAAGTAGGGAT TATGCTTGGTATGATAATATTCCACATAAAGAGCTTAGCATTGAGAAAGCTATTCAGAATTGGATTCAAGTTGAGGGTGA TAGGTTCAGATTTCCTGGTGGAGGTACAATGTTTCCACGTGGAGCTGATGCATACATTGATGACATTAATGAGCTTATTC CCCTGAGGAGTGGTCATATCAGAACTGCAATTGATACAGGATGTGGGGTAGCAAGTTGGGGTGCTTACCTTTTAAAAAGG GACATCATAGCAATGTCTTTTGCACCAAGAGATACACATGAAGCACAAGTCCAGTTTGCATTGGAGAGAGGAGTTCCTGC CATGATTGGCATCATGGCTTCTCAGAGGATGCCATACCCAGCAAGGGCATTTGATATGGCTCATTGTTCTCGCTGCCTGA TACCTTGGCACAAAAATGATGGTATGTATTTGATTGAAGTGGATAGAGTCCTCAGACCAGGTGGCTATTGGATTCTTTCT GGCCCACCTATTCGATGGAAGAAATACTGGAGAGGATGGGAAAGAACGCAAGAGGATTTGAAGCAAGAACAAGATTCAAT TGAGGAAGTAGCCAAGCGCATATGTTGGAAGAAAGTTATTGAGAAGGATGACCTCTCCATTTGGCAAAAGCCTAAAAACC ACGTTGAATGTATCCAAAACAGACAAGTTTACAAAACACCACACATATGCCAATCCGACAATCCTGACATGGCTTGGTAC AAAGATATGGAAAAGTGCATAACTCCATTACCAGAAGTTAGAAGCTCAGACAAAGTTGCTGGAGGGGAACTAGAAAAATG GCCGGACCGTGCATTCGCCACCCCTCCTCGAATTAGCAGCGGTTCGATACCGAGCATTACTGTAGAGAAATTTCAAAAGG ATAATGAACTATGGAAGGAAAGGATAGCACATTACAAGCGTCTCATTCCTCTCTCTCAAGGAAGATACCGAAACATTATG GACATGAATGCTTATCTTGGTGGATTTGCAGCAGCCTTATCAAAATACCCTGTGTGGGTTATGAATGTTGTTCCACCAAA TCTGGACCATGACACTCTAGGTGTAATTTATGAACGAGGTTTTATTGGGACTTACCATGATTGGTGTGAAGCCTTCTCAA CTTACCCAAGAACATATGATCTCATTCATGCTACTAGTGTAATGGGCATATATCAGGATAGGTGCAACATTACTGTTATA CTACTAGAGATGGACAGAATTCTGAGGCCAGAAGGTACTGTTATATTCAGAGATGCAGTAGAGCTTCTGGTGAAGATTAA GGCCATTACTGATGGAATGAAATGGAGAAGCAACATCATGGATCATGAGAGTGGACCCTTTAACCCAGAAAAGATTCTTG TTGCAGAAAAAACTTACTGGACTGGTGAAGCTACACAGAACCAGAGCTAA
Protein sequence (LotjaGi4g1v0438600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPKDYNGSPKHYNQFEAKRNRLTWIFGVSGLCILSYIMGAWKNTPTPYNQSSDVYTKVDCNTGSTPSGSLSIPSSTSNLD FESHHYIEINSSGGVQEFPPCDMKYSEYTPCQDPNRGRKFDRNMLKYRERHCPTKEELLYCLIPAPPKYKTPLKWPQSRD YAWYDNIPHKELSIEKAIQNWIQVEGDRFRFPGGGTMFPRGADAYIDDINELIPLRSGHIRTAIDTGCGVASWGAYLLKR DIIAMSFAPRDTHEAQVQFALERGVPAMIGIMASQRMPYPARAFDMAHCSRCLIPWHKNDGMYLIEVDRVLRPGGYWILS GPPIRWKKYWRGWERTQEDLKQEQDSIEEVAKRICWKKVIEKDDLSIWQKPKNHVECIQNRQVYKTPHICQSDNPDMAWY KDMEKCITPLPEVRSSDKVAGGELEKWPDRAFATPPRISSGSIPSITVEKFQKDNELWKERIAHYKRLIPLSQGRYRNIM DMNAYLGGFAAALSKYPVWVMNVVPPNLDHDTLGVIYERGFIGTYHDWCEAFSTYPRTYDLIHATSVMGIYQDRCNITVI LLEMDRILRPEGTVIFRDAVELLVKIKAITDGMKWRSNIMDHESGPFNPEKILVAEKTYWTGEATQNQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| PANTHER | 4 | 625 | 622 | 0.0 | – | |
| PANTHER | 4 | 625 | 622 | 0.0 | ||
| Phobius | 21 | 41 | 21 | - | – | |
| TMHMM | 22 | 41 | 20 | - | – | |
| Phobius | 42 | 629 | 588 | - | – | |
| Pfam | 107 | 617 | 511 | 1.1E-229 | ||
| SUPERFAMILY | 129 | 336 | 208 | 1.48E-29 | ||
| Gene3D | 192 | 370 | 179 | 1.6E-11 | – | |
| Coils | 448 | 468 | 21 | - | – | |
| SUPERFAMILY | 457 | 579 | 123 | 1.69E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi4g1v0438600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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