Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi4g1v0442300 |
Transcript ID | LotjaGi4g1v0442300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Vacuolar sorting-associated protein 32-like protein; TAIR: AT2G19830.2 SNF7 family protein; Swiss-Prot: sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1; TrEMBL-Plants: tr|I3SYH6|I3SYH6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0442300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81584771..81590953) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTCATTTTTGTTCATTGAAGGAAAGGAGACCTAAATCTAATTATGAAATTAAAAAAATATCATCTTAACTGTTATGT TAGTAAAAAACAATCGGATAGGATATAGCAAAGTAGAAAGTACTTTATAAAGTGCCTTCCAATCCAAGGTCAGCCACCCC TCACAATCTTAGCTGATGAAGGGACCCACATAGTTGCGCGCCACGTGGAGGCATCTTCCGTTCACTTTCTTCTCATTTTG TTGTTGTTTCCTACGCGGTAAAGTCTCTATCATCTTCTCCCTCGCTAATCGCAATCGCAATCGCAATCGCAATCGCAGAT CTCTCATCTCAACCCTTTCTCCGATCCAAACCCTAATTATTCAACAGGGTTCGTCGATCTCAATCTTCCGTTCCTTTTTC TCTGTTCAATTTCAATTCTTCGATTTCTAATGGATTCTTTTGTTTTTCCAGGAAGATCGGTTGGTCATCACCGATTGACC TTGTACCTTCAATTTTCATCTCAGAAAGGGGTTTTCACTCATCATCTAATAATAACCAATCATGTTTACTCGAATTTTCG GTAAACCTAAGCAGGAAGCCAACGCTCTCACCACCTTGGACAAGTTGAATGAGGTATCTTCACCCCTTAATTGCTCTATA CATCAATTCAATCTTTTACTTTCTTCTTTTCATTTGTTTTACACAATATCAATTCAATCCTGTGATTCAATCATGTAACT GTTGATGTTTGCAAACTTTATTGGTTGCTTCTAGCTGTAGCAGTAGTTTATAGTTTGAGGGATCATTTTTCTCATTTTGT TCTTTCTGTAGACACTTGAAATGCTCGAGAAAAAGGAGAAAGTTCTCCTCAAAAAAGCTTCTGCAGAAGTTGAAAAAGCC AAAGAGTTCACTAGGGCAAAGAATAAAAGGGGTATGTACCAAAACTCATGGATGCTTGTTATTATATGGAATAATACCGT TGGAACTTATGATGCCTCTCTGCTTTCACCTATATTTCTGTTATTGGTGGAGATTATGAATGTATGCTTTGGTCAAATTC TCGCGTTGTTGATAGTATCATCAAGATTTCGGTCCTGTTTAGTCCATCGTAATTTCGGTCCGGTCATTCCATTAAATGAA TGTACAGTTCTACTTTTCCTTCGATATTCAATATGACTTCCTTTGGACGAAATAGTCTTTCTTTGCCATCAAAACTGATT ACGGTTACCTTTTTACTCCGTGTAATTTCTTAAAATGAAAGGAATTGTCCTATGACACTATTGCTGCCCTTGCCATCGCC ATCACAGTTCTCTTCCTTTATCTAAGTTGTGACAGAATACAAATTCCATTGTCGACGGTGCAAAGGAAGTTAATGGCTAA TATTATTCTATTGGGAATAAAATGCAATCACACCCCTTTATTTTTGGACGAGTTGCAAATACGCCCCCTCATCTCAACTA CAGAAGTTAGATATTAAACACAAACAATGTAGCCATTAGCAATTAATTTCTCCATCTTTCTTTTTGTTCCGTTACTTCTA ACTTTATATTTAATGCGGCACATACCATATTTTTCCAGAAATCTTGAAATATAATTACTTTACACTTTATCTTTTTATTA TAATAAAAAAATATTGGGGGCTGCAAAACGTGGGTTGGGTGTGAATCCTCCCTAAATGTGGCATCGTAGGAACCACCTTC CTCTTGCCATTTATATTGCACTTTTACTCAATTTCTATGGGTAAGCTTTAACGGTGCACATTTTATATATAAAAAAAAAT CCTAATAGAATGGTGTATTAATATATTGTGACATTGCTTATTATTTTTTCTGCCTCATGCAGCGGCGATACAATGTTTGA AGAGGAAGAGGCTATATGAGCAACAAATAGAGCAGCTTGGAAACTTCCAGTTGCGTATTCATGACCAGGTGTGAATGTAA CTTTGTATTCAGTTGGTAATGTTTTCAGAACTGGACTATCTATTGCTCTGGCAAAAAGGATGGTTTAACGTTGCGAAGTT CAACTTGTTTTGAACTGGTGTTTTATATATGCATATATCATAGGTAGCGTTTGGAAGACATGTTGGAACGGGACGGAACG GGACATGAGGGTTCTGTTCCATGTTTGTTACATGTTTAAGTAGGAACGGAACAGGACAAAATACTCATTCAACAGAACAC TTTGGTTCCCTGAAAAAGGGTGGAACCAAAGAGAACAGAACAGGACACTGAAAAAAAATATTGACACAGACAAAACTACC CCTAGGTTTATGCTCTTATCTTCCCCAATTATTCACTTCAGTTTTCTGCCAGCCGTTACATTCATCTCAATTTTCTTCAT CTGCGAACTCTCTGTTCCATGTAAAATAAATTTCAATCACTCTACTTTTTCCTCTTAATCACATCGTCATGTACACCCAC ATAGAAGATGGACGTTATCGATCAAACCAAATTCATCTCCAGTTTGATGACACGATGGATGAAAACAATGGTCTGATGCC ATTTCTCAACGACTCAATCTAATGTACACTAGTAATATCAATTGCTGATCTTCCATCAAAAAAACATCAATCGCTATAAA AAAATATTAACCAGATGTTTCATTTTCATAAAAAAGTAATATGTTCCATTGTTTTGCTATTTTTCATGCTTAATAAACAC TGAACATGATAAGGGTACATTTGTAATTAACATTACAGTCCTGTTTTGTATGTGATGTATGTACCAAACACAATGCACAG AACATTATTGTCCCGTTCCGTCCTGTTATGTTCTGTTCCGTTCTGTTCTCTTTGGTTTCCAAACGTTACCATAATGTTAT ATGCTCATACTTGTTATATAAATATATAACATGTAAGAAAAATGTTTTGCGTGAGGAAAAATATAGGAATATATTCTACT GCAATTAAATTGATTAATCATGTTAGTAAGTATTAGACTAAAAGTACTAAACAAACTAATTGTAACATGTACTAGTCTCA TATTGAGCAAGTAGAAGGGGAAGGAAGAAGTGAAACTTCTGCTAATAAATAATAATTGTTGAAGTTATAGGGTTTTAGAT GAGGAAAGAAAGAAGAGAAAGAATGAAGACTTAGAATCATCACTATGGTCTTGTATATATGACAATATGATACTGAAGAC AAAGGAAAAACTCTTGTTTATACTATTACTAAACTCCAAATCCGAATCAAATAGGAAAGCTAATCATGATTATTAGTGGA CTCCTAATCTTAGTTAAATAAGGAAATAAATTATGAGATGTGAAAAAATATGGAAGCTAATCATAAGAGATAATCTATAA GATGCTTTAAGATAAGATCAAGATATTATACGATGTTTTCATATAATCTAATTCTAACACTCCACCTCAAACTAAAGCTT CCTAAGCTTTAAATTTGTTACAAATATACCCTTTGGAGCTGGGGCCAGACTGATTTTTCTGATAGGAGATAGATCAGCTC GAGTCGAATTGAATGGTGGTGGTTTCAGCCAGAAAAGTTTTCTTAGAAAGATTATAAAGTGGCTGTAAAATGTGTCTTGA TGCTGGCAGCTGTGGTAGGGGGTATTCACACCATCACTAACCAAATATTTTCAGGGCAGTAAGAGCTTATTTGATGTTAC GGTGGTAAATGAGGAAAAAATCACTGACTTAAAGATAGCTTAGAAGATAATGACATTACTAAAGTAGAGCCCCAAACTTT AAAGAACTCAATACCAAAATAGTGACAAGACGAGGTCACAGAGGGTGGTACTGGCGTATTGCTCTGATACCATTTTGAAG TTCTATGTTTATAGATATGGAAGGAGAGAAGATAAAGAATATAGACTTTGAACTGATATTAGGGTCTTATGATGATGATA CAGAGGGAAAAGCACACTCTTATTTATACTGGTTTTAGACTCTTATTCCTAATCCAATAGGGAAACATATATTGAGATAT AAAAGAATGAAACTTCCTGAGATATAATCTAAACTTTAACCAAACTCTTGATGCATTTCCTATTTGTCTCACATTGGACA AATTAACAAAAGAAATGCCAGTGTCTTGGTTATTAATTGGCAACCAAATAATCGTTGTCATAATTTTTTTGTTAAAAGTT CAAAAGGAGGATAGGCCAGCTAAATTGTTCAAACCATGACTGGTTCACATAGTTTGCTTGGTTCATGACCTGTATTTGCA TTTCTTTTACTGGTTTTTAAGAGTTGATTGGACCAGTCTAGTTCTGACAACTATGGATATGAAATGATTCCCAATGTGAT GGTATTTGGCAACTGTGACAGATGATTATGTTGGAAGGTGCCAAGGCAACTACAGAAACTGTTGACGCGTTGAGAACTGG AGCATCTGCTATGAAGGCTATGCAGAAAGCAACGTATGTAGCACTATTTTTGTTTTATAAATTTTGTTTTACTTTTCTGA ATTTTACATCTCTGTTTTATGCTTGTTTTAAAACCATAGAAGTTTACTATGTGGTGAAAACTTTCTTCATGCGTGTAGGA TGTAGCAGATATTGTTTCGTGCTCTTCCTCATCTTATTTAATGGACTGCTGATTCTGACATTGTTGAGTTGTAACTTTCT TTCTTTCTCAGGAATATTGATGATGTTGACAAGACCATGGATGAGATCAATGAACAAACTGAAAACATGAAACAGATTCA GGAAGCATTGTCAGCTCCAATCGGTGCAGCGGCTGACTTTGACGAGGTTATCTTCTCAGATGTTAATTTGCTTTGCACCC TCTGCAAATGAGGATTTATTAGCTTTTGATTGAATTGGGTATTAAACACTGACAAGTATGTATTTTGTGATATATCCACT TAGTAATCTGAATGTTTGCCATTTCAGGATGAGTTGGAAGCAGAACTTGAAGAACTGGAGGGTGCTGAGTTGGAAGAACA GCTTCTTCAGCCTGCAACTACAGCTCCAGCTGCTCCAGTGCACGCCCCAGCTGGCCGACAGCCTACTCGCCCTGTGACTA CAAAGCCTACTCCCGAGGAAGATGAATTGGCAGCTTTGCAGGCTGAGATGGCACTTTGAGCAGGTCTCTTTTCTCAGCTG TGGCACTATTTATGCTATGTGTGCATTAATGTCTTAGTTCGATTGGTAATGTATCAGTTGAATGGTTTGTGAATGCACCA GTTTCATGTTTGATATAAACCTGCACCGTTGAGTTCACTTCTGTTATCATTGTCTGAAATAAATTGTCTAAAGTCGCTTG TCAGAAAAGTTTGACTTTCCTTTTTTATGCACTTCTTGTTGATTTTGCTCCTGGCTTTGATTAAGCCAGAATTTTGCATT TGCAGGCATTGATGTGCATGTTACGTTGCCCCTATAAAGATTTGTAACCAGTGACATGGAGAATTCAGCCCCCTCTCACG CTCTGCTTATCTTTGTGAAATTATTGAAAGAGCAGATGATGATGTATATAAAGTTGATTAAAAAGTTAATAGCCCTTCAA AACTTGTACTTTGTCACCTCTTCATTTTAGACGTCCCGTTTCTTTCTGAAAGTTTAAAACCCAGCTTTGTACAATTGTGC GTAGTCGAGTATCGACGCATATGGTTTCTTTTTATATTCCTTGAGAACCTAGTCGAATTTAAAATTATTCATCAGACTGA TCGATGTATATCTTAAATTATGCTATAACAGAATAAATATGATAAAAGAAATTGTCGATATAGGTTGGAGCTTGGACAGG CCATGCTGGTGAGTAATTAATTATTGTATTAGTTTATAGGGGAATTCACAAGCTCCATTCAAAGTTGGAAATATTTATTT AGTGCACGTTCTTTGTCGCAAATGTGATTTTACAAATCTCAAATAGAGAATTAAGATTTATGAACTGAGTTTGAGTTTAA ACTTTAACGTGAATTGGGTTTGAGTTTCATGGAAATTCAGAGACACATACTTGAATGACATGCAGGGTGCAATTGGATTG AGTTGGAGTTGAGGAGAAACATGAATTCAAATCCATTAGAAACACACTTGGTTTGTTTCTTTTACAGTATGAAATTATTT TTTTGCGGGAATTTGAGCAATTGTGGTGACGGCACTTGGCAAGATTGAGGTTGAAAAGCTTTCTTCCATTTATTTATATA AATAGACAGATAGGTTGGCGAATGAAGACAAAATACATGTAAGCTTAATTAAATTTAAGGTACAAAGTGGAAATAGAATG TTAAAAATAATAAAATAGTAGAG
CDS sequence (LotjaGi4g1v0442300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTACTCGAATTTTCGGTAAACCTAAGCAGGAAGCCAACGCTCTCACCACCTTGGACAAGTTGAATGAGACACTTGA AATGCTCGAGAAAAAGGAGAAAGTTCTCCTCAAAAAAGCTTCTGCAGAAGTTGAAAAAGCCAAAGAGTTCACTAGGGCAA AGAATAAAAGGGCGGCGATACAATGTTTGAAGAGGAAGAGGCTATATGAGCAACAAATAGAGCAGCTTGGAAACTTCCAG TTGCGTATTCATGACCAGATGATTATGTTGGAAGGTGCCAAGGCAACTACAGAAACTGTTGACGCGTTGAGAACTGGAGC ATCTGCTATGAAGGCTATGCAGAAAGCAACGAATATTGATGATGTTGACAAGACCATGGATGAGATCAATGAACAAACTG AAAACATGAAACAGATTCAGGAAGCATTGTCAGCTCCAATCGGTGCAGCGGCTGACTTTGACGAGGATGAGTTGGAAGCA GAACTTGAAGAACTGGAGGGTGCTGAGTTGGAAGAACAGCTTCTTCAGCCTGCAACTACAGCTCCAGCTGCTCCAGTGCA CGCCCCAGCTGGCCGACAGCCTACTCGCCCTGTGACTACAAAGCCTACTCCCGAGGAAGATGAATTGGCAGCTTTGCAGG CTGAGATGGCACTTTGA
Protein sequence (LotjaGi4g1v0442300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFTRIFGKPKQEANALTTLDKLNETLEMLEKKEKVLLKKASAEVEKAKEFTRAKNKRAAIQCLKRKRLYEQQIEQLGNFQ LRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPIGAAADFDEDELEA ELEELEGAELEEQLLQPATTAPAAPVHAPAGRQPTRPVTTKPTPEEDELAALQAEMAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 218 | 218 | 4.3E-131 | – | |
PANTHER | 1 | 218 | 218 | 4.3E-131 | – | |
Coils | 12 | 39 | 28 | - | – | |
Gene3D | 14 | 91 | 78 | 4.4E-23 | – | |
Pfam | 20 | 188 | 169 | 7.0E-47 | ||
Coils | 122 | 142 | 21 | - | – | |
Coils | 151 | 175 | 25 | - | – | |
MobiDBLite | 175 | 205 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi4g1v0442300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…