Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0442300 |
| Transcript ID | LotjaGi4g1v0442300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Charged multivesicular body protein; TAIR: AT2G19830.1 SNF7 family protein; Swiss-Prot: sp|O82197|VP321_ARATH Vacuolar protein sorting-associated protein 32 homolog 1; TrEMBL-Plants: tr|I3SYH6|I3SYH6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0442300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81585566..81589789) extracted from Lotus japonicus Gifu genome v1.2.
TTTGTTCTTTCTGTAGACACTTGAAATGCTCGAGAAAAAGGAGAAAGTTCTCCTCAAAAAAGCTTCTGCAGAAGTTGAAA AAGCCAAAGAGTTCACTAGGGCAAAGAATAAAAGGGGTATGTACCAAAACTCATGGATGCTTGTTATTATATGGAATAAT ACCGTTGGAACTTATGATGCCTCTCTGCTTTCACCTATATTTCTGTTATTGGTGGAGATTATGAATGTATGCTTTGGTCA AATTCTCGCGTTGTTGATAGTATCATCAAGATTTCGGTCCTGTTTAGTCCATCGTAATTTCGGTCCGGTCATTCCATTAA ATGAATGTACAGTTCTACTTTTCCTTCGATATTCAATATGACTTCCTTTGGACGAAATAGTCTTTCTTTGCCATCAAAAC TGATTACGGTTACCTTTTTACTCCGTGTAATTTCTTAAAATGAAAGGAATTGTCCTATGACACTATTGCTGCCCTTGCCA TCGCCATCACAGTTCTCTTCCTTTATCTAAGTTGTGACAGAATACAAATTCCATTGTCGACGGTGCAAAGGAAGTTAATG GCTAATATTATTCTATTGGGAATAAAATGCAATCACACCCCTTTATTTTTGGACGAGTTGCAAATACGCCCCCTCATCTC AACTACAGAAGTTAGATATTAAACACAAACAATGTAGCCATTAGCAATTAATTTCTCCATCTTTCTTTTTGTTCCGTTAC TTCTAACTTTATATTTAATGCGGCACATACCATATTTTTCCAGAAATCTTGAAATATAATTACTTTACACTTTATCTTTT TATTATAATAAAAAAATATTGGGGGCTGCAAAACGTGGGTTGGGTGTGAATCCTCCCTAAATGTGGCATCGTAGGAACCA CCTTCCTCTTGCCATTTATATTGCACTTTTACTCAATTTCTATGGGTAAGCTTTAACGGTGCACATTTTATATATAAAAA AAAATCCTAATAGAATGGTGTATTAATATATTGTGACATTGCTTATTATTTTTTCTGCCTCATGCAGCGGCGATACAATG TTTGAAGAGGAAGAGGCTATATGAGCAACAAATAGAGCAGCTTGGAAACTTCCAGTTGCGTATTCATGACCAGGTGTGAA TGTAACTTTGTATTCAGTTGGTAATGTTTTCAGAACTGGACTATCTATTGCTCTGGCAAAAAGGATGGTTTAACGTTGCG AAGTTCAACTTGTTTTGAACTGGTGTTTTATATATGCATATATCATAGGTAGCGTTTGGAAGACATGTTGGAACGGGACG GAACGGGACATGAGGGTTCTGTTCCATGTTTGTTACATGTTTAAGTAGGAACGGAACAGGACAAAATACTCATTCAACAG AACACTTTGGTTCCCTGAAAAAGGGTGGAACCAAAGAGAACAGAACAGGACACTGAAAAAAAATATTGACACAGACAAAA CTACCCCTAGGTTTATGCTCTTATCTTCCCCAATTATTCACTTCAGTTTTCTGCCAGCCGTTACATTCATCTCAATTTTC TTCATCTGCGAACTCTCTGTTCCATGTAAAATAAATTTCAATCACTCTACTTTTTCCTCTTAATCACATCGTCATGTACA CCCACATAGAAGATGGACGTTATCGATCAAACCAAATTCATCTCCAGTTTGATGACACGATGGATGAAAACAATGGTCTG ATGCCATTTCTCAACGACTCAATCTAATGTACACTAGTAATATCAATTGCTGATCTTCCATCAAAAAAACATCAATCGCT ATAAAAAAATATTAACCAGATGTTTCATTTTCATAAAAAAGTAATATGTTCCATTGTTTTGCTATTTTTCATGCTTAATA AACACTGAACATGATAAGGGTACATTTGTAATTAACATTACAGTCCTGTTTTGTATGTGATGTATGTACCAAACACAATG CACAGAACATTATTGTCCCGTTCCGTCCTGTTATGTTCTGTTCCGTTCTGTTCTCTTTGGTTTCCAAACGTTACCATAAT GTTATATGCTCATACTTGTTATATAAATATATAACATGTAAGAAAAATGTTTTGCGTGAGGAAAAATATAGGAATATATT CTACTGCAATTAAATTGATTAATCATGTTAGTAAGTATTAGACTAAAAGTACTAAACAAACTAATTGTAACATGTACTAG TCTCATATTGAGCAAGTAGAAGGGGAAGGAAGAAGTGAAACTTCTGCTAATAAATAATAATTGTTGAAGTTATAGGGTTT TAGATGAGGAAAGAAAGAAGAGAAAGAATGAAGACTTAGAATCATCACTATGGTCTTGTATATATGACAATATGATACTG AAGACAAAGGAAAAACTCTTGTTTATACTATTACTAAACTCCAAATCCGAATCAAATAGGAAAGCTAATCATGATTATTA GTGGACTCCTAATCTTAGTTAAATAAGGAAATAAATTATGAGATGTGAAAAAATATGGAAGCTAATCATAAGAGATAATC TATAAGATGCTTTAAGATAAGATCAAGATATTATACGATGTTTTCATATAATCTAATTCTAACACTCCACCTCAAACTAA AGCTTCCTAAGCTTTAAATTTGTTACAAATATACCCTTTGGAGCTGGGGCCAGACTGATTTTTCTGATAGGAGATAGATC AGCTCGAGTCGAATTGAATGGTGGTGGTTTCAGCCAGAAAAGTTTTCTTAGAAAGATTATAAAGTGGCTGTAAAATGTGT CTTGATGCTGGCAGCTGTGGTAGGGGGTATTCACACCATCACTAACCAAATATTTTCAGGGCAGTAAGAGCTTATTTGAT GTTACGGTGGTAAATGAGGAAAAAATCACTGACTTAAAGATAGCTTAGAAGATAATGACATTACTAAAGTAGAGCCCCAA ACTTTAAAGAACTCAATACCAAAATAGTGACAAGACGAGGTCACAGAGGGTGGTACTGGCGTATTGCTCTGATACCATTT TGAAGTTCTATGTTTATAGATATGGAAGGAGAGAAGATAAAGAATATAGACTTTGAACTGATATTAGGGTCTTATGATGA TGATACAGAGGGAAAAGCACACTCTTATTTATACTGGTTTTAGACTCTTATTCCTAATCCAATAGGGAAACATATATTGA GATATAAAAGAATGAAACTTCCTGAGATATAATCTAAACTTTAACCAAACTCTTGATGCATTTCCTATTTGTCTCACATT GGACAAATTAACAAAAGAAATGCCAGTGTCTTGGTTATTAATTGGCAACCAAATAATCGTTGTCATAATTTTTTTGTTAA AAGTTCAAAAGGAGGATAGGCCAGCTAAATTGTTCAAACCATGACTGGTTCACATAGTTTGCTTGGTTCATGACCTGTAT TTGCATTTCTTTTACTGGTTTTTAAGAGTTGATTGGACCAGTCTAGTTCTGACAACTATGGATATGAAATGATTCCCAAT GTGATGGTATTTGGCAACTGTGACAGATGATTATGTTGGAAGGTGCCAAGGCAACTACAGAAACTGTTGACGCGTTGAGA ACTGGAGCATCTGCTATGAAGGCTATGCAGAAAGCAACGTATGTAGCACTATTTTTGTTTTATAAATTTTGTTTTACTTT TCTGAATTTTACATCTCTGTTTTATGCTTGTTTTAAAACCATAGAAGTTTACTATGTGGTGAAAACTTTCTTCATGCGTG TAGGATGTAGCAGATATTGTTTCGTGCTCTTCCTCATCTTATTTAATGGACTGCTGATTCTGACATTGTTGAGTTGTAAC TTTCTTTCTTTCTCAGGAATATTGATGATGTTGACAAGACCATGGATGAGATCAATGAACAAACTGAAAACATGAAACAG ATTCAGGAAGCATTGTCAGCTCCAATCGGTGCAGCGGCTGACTTTGACGAGGTTATCTTCTCAGATGTTAATTTGCTTTG CACCCTCTGCAAATGAGGATTTATTAGCTTTTGATTGAATTGGGTATTAAACACTGACAAGTATGTATTTTGTGATATAT CCACTTAGTAATCTGAATGTTTGCCATTTCAGGATGAGTTGGAAGCAGAACTTGAAGAACTGGAGGGTGCTGAGTTGGAA GAACAGCTTCTTCAGCCTGCAACTACAGCTCCAGCTGCTCCAGTGCACGCCCCAGCTGGCCGACAGCCTACTCGCCCTGT GACTACAAAGCCTACTCCCGAGGAAGATGAATTGGCAGCTTTGCAGGCTGAGATGGCACTTTGA
CDS sequence (LotjaGi4g1v0442300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCGAGAAAAAGGAGAAAGTTCTCCTCAAAAAAGCTTCTGCAGAAGTTGAAAAAGCCAAAGAGTTCACTAGGGCAAA GAATAAAAGGGCGGCGATACAATGTTTGAAGAGGAAGAGGCTATATGAGCAACAAATAGAGCAGCTTGGAAACTTCCAGT TGCGTATTCATGACCAGATGATTATGTTGGAAGGTGCCAAGGCAACTACAGAAACTGTTGACGCGTTGAGAACTGGAGCA TCTGCTATGAAGGCTATGCAGAAAGCAACGAATATTGATGATGTTGACAAGACCATGGATGAGATCAATGAACAAACTGA AAACATGAAACAGATTCAGGAAGCATTGTCAGCTCCAATCGGTGCAGCGGCTGACTTTGACGAGGATGAGTTGGAAGCAG AACTTGAAGAACTGGAGGGTGCTGAGTTGGAAGAACAGCTTCTTCAGCCTGCAACTACAGCTCCAGCTGCTCCAGTGCAC GCCCCAGCTGGCCGACAGCCTACTCGCCCTGTGACTACAAAGCCTACTCCCGAGGAAGATGAATTGGCAGCTTTGCAGGC TGAGATGGCACTTTGA
Protein sequence (LotjaGi4g1v0442300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEKKEKVLLKKASAEVEKAKEFTRAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGA SAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPIGAAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVH APAGRQPTRPVTTKPTPEEDELAALQAEMAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 191 | 191 | 1.6E-113 | – | |
| Gene3D | 1 | 64 | 64 | 9.3E-19 | – | |
| PANTHER | 1 | 191 | 191 | 1.6E-113 | – | |
| Pfam | 1 | 161 | 161 | 5.7E-45 | ||
| Coils | 95 | 115 | 21 | - | – | |
| Coils | 124 | 148 | 25 | - | – | |
| MobiDBLite | 149 | 180 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi4g1v0442300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…