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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0443500 |
Transcript ID | LotjaGi4g1v0443500.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAC domain protein; TAIR: AT4G29230.2 NAC domain containing protein 75; Swiss-Prot: sp|O49459|NAC73_ARATH NAC domain-containing protein 73; TrEMBL-Plants: tr|A0A151TKC8|A0A151TKC8_CAJCA NAC domain-containing protein 8; Found in the gene: LotjaGi4g1v0443500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81690692..81696033) extracted from Lotus japonicus Gifu genome v1.2.
CCGGTTCATAAGTTAACAAAAGTTTAAAGGTGCTATGAGAGTTTGAACCAGAAAACTTTTCCTTTATCATTTTTCTCACT TGCTTCAGATAAAGCAGAGTGAATTCTGGTGTTTTTTCCATCTTTCTGTTACACTTCCCTCTTTTCTTCATCCTCCTTCA CCTGCTTCTTGCTCCTCTCTTCTTATCCTTCTACAACACTTTATTTTTCTGCATATTCTCATCCTTATTCTGCAGAATTT TCATTACCATAGATTTGATTCATTCTCTAAAACAGCCACATGTATGGTAGAGAATTATTCTCTATTTTCCCCCCTTTTTT ATATTTCAAGGGTTTTTTTTTACTCTTTATTTATCATTTATGTTGGTGTCTGTATAGCTAGTTTCTGAATATGATCAGCA ACTTGTGAAAGCCAAAACAAACTTCTTATTATTCTTTTATTTTCTCTTTCAGGTCACTGGCATCACTTTTGTTGTTGGTG TTATAATTCAGGTCACTGACAATGATTGAAACATATCATCCCATTTTTCCTATTGATCTTTTAGAAAAAAATTAGCTATG ATCTCAACAAGCTCTTGGATTCTCCTGTGATATATATATAGAAGAGATATGCACTATTCATTCTTCCAATTCAAAACCTT ATCATAAAGTTTGATCAAGAGAGGTAGCATATCCATCACAATCAAGCACTTTCAGAAGCAGAACATGAATAACATGAGCA ACTTGAGTTCTTTCAGCAGCTCTGGTCTCATAGATTCCAGGCTTGAAGAGCATCAATTGTGTAGATCTAAACAGTGCCCT AGTTGTGGACACAAGTTTGAAGGGAAGCCGGTACGGAAAAATCTCAGTAATATTCTTTTCTTCAAGAAAAAGCCTTTGAC AAAATGAAGAATCATACCAGTAAACTTTACCATATTCATATTCTCAATGCCGTTTCATAATTGTAATTAATTAAATGGAG CATTTATATGGTATCCCTTTTCTCCTTTAGGCTTTGTCTACCTAGCAATTACTAAAGTTTTAGAATTTGTTGAAGTTTTG ATAATCCTCTTTATTTTATATTCCCTCTCTCTTTTCTCTTTCTTATATTCTTCTTATCTTTCTCCCTTTAACTTTTTTTT TTTTCATTTGAATTGCAAATAGGATTGGCTTGGTCTACCAGCAGGAGTTAAGTTTGATCCAACAGACCAAGAACTCATGG AACATCTTGAAGCCAAGGGAAAGGATATGAAATCACACCCTTTGATTGATGAGTTCATTCTCACTATTGAAGGAGAAGAT GGGATTTGTTACACCCATCCTGAAAAAATTCCAGGTTGATCAATATTAAGATATATAGAAAAATTGAAACACCCTCTATA GCTCTAACTTCTTCAAGCTGATCAAGTGTTTGTGGTTTCCTTATTATTATTAAGAACTATACTAAGAGTTAAGAAAACAC AAGAATTTGTAGTTATCACTCACTATGCCATGATTTCTGTTAAGAACAATGTTATATGTTACGAAGGAAAATTGCAGGAA ATGTTGGTGTGGCCAAGTTAACTGGTGTAGTTTTACAAAAATCATGGGGGTAGTGAGTAATAACTAACTCTTCCTGTATT TCTTATCGTGACAATTAGTATTTTCCTTTCTGTCAAATACCATAGTTAGCAATGCCCCATCATCAACATATTGCTTGTAG TTTTCTTTCGTAACATATAACATTGTTGTATTATTTAACATTTTATATAAAGAACTCCCTTGATATTTATAAGAAACTTA ATGAAGAGGGTTCGCCTAATGGTTGATCTAACTTTGATTTTGGTTTTGTGGTTAATTTTCAGGAGTATCAAGAGATGGGT TGAGTAGACACTTCTTCCACAGACCATCAAAGGCATACACAACAGGTACAAGAAAAAGGAGAAAGATTCAAACTGAATGT GATCACTTGCAACAAGGAGGAGAAACCCGTTGGCACAAAACTGGGAAAACAAGACCAGTGATTGTGAATGGAAAACAAAA AGGGTGCAAGAAAATTCTAGTCCTGTATACCAATTTTGGGAAGAACAGAAAACCAGAAAAGACAAACTGGGTGATGCACC AGTACCATCTGGGACAGAATGAAGAAGAGAAAGAAGGGGAACTTGTGGTGTCAAAGATATTTTATCAGACACAGCCAAGG CAGTGTAATTGGTCTGAGAAAAGTGCAGCAACAACAACAACAACAACAAATGGTGAAGGAAGTGGAGACCCTAACTACAG TGGAAGTGGTAGTTGCTCTTCTAAGGAAGTGGTTACTCAAAGAGATGAGATGTCTGCTGCTGTTGTTGGGGTTACTCCAA TGACAAGCTTCACCACTGCTTTGGATATTCAGCACCTAAAATCTGACCATTTAAGCTTCTTCCCATTCAGAAAAAGCTTG CATGAGGTACATAAATATAAACCATAAAGTAATGAAACTTGAATATACAAACCCCCAATAAACACCTCATTTTGCTATCT AGTTCTCTTCTTATATATATATCATATCAATTACTTCTTTCTTTTTAATAATGATATTTAGACATCCAAACAATATATAC ACATTTTTTTATTAAATGCATTACTTCTCTCTTCTATTTTTTCCCCACTGGGGGTTGTTCTCAAGTATGATCTAGCTTCT AGAAAAATTCTTTTGCTTTGGGAAAAAAAACTCTATGCTCAAAATGGTGAAAAAAAACTGAAAGGGGTTAAGGAAGCTGT TGACATAACACCATTGCTTGCATATACCGCATGAAATTTGTGGACCTGGCCTGATATTAAATCAATGTCAGCTAACAATC ACTTCTTTATTTCTCTTTGATCTCATTGATCTCATTCCTACATATATTTTCTTCATATCTCATTTTTTAATCAAATTTTA TATTATATTATTTATTTCTCTTCATGTATTTTAATTTTATCTCTCCCTTATGGTGTATTTGGAGGTTTCAGCCAAACTTT TTTTCATACCTAAATAAACACAAAATGTTGAAAAAGATTAAGGAGAGGTGAGGTGATAATAATGGACTAGCTAGCTATAC CTAGGTAGATATTTAGGTGATATTATATTTGTAGTTTACACTTAATTTTCAGATGATGATCGATGGGTGTTGCAGGTTGG AATAGGAGAAGCTTCGAGGACATCAAGAGAAGTTCAAGCATCAGGCTCATGCGAGGAAGAAGTACATGAACAACGGCATG TAGCACATCATGATCATCATCAACAACAACAACAACAACAGATTGCAACGACATCGTTCCACATGATCAGTAGGCCTTCG CATCCCATCTCCACAATCATCTCTCCACCACCTCTCAACCACACATCCATCAATATCCTAGACGACAATTCTTACCAAGT CTCCACAACAACAATGATGCTCCAAAATGATAATTTTCAGGTAATCATCACCCAAATTAAATCCCACTTCCCAAAGATGC TTATATAGTTTTTACACATTTTCCCCATGATAAAAACTACTTCACTCATTAATCATGTTTTTATTTGTCATAAAAATAAT TTTCAGTTAATTTCTTACTAACGCAAACAAACACCATTTTTTTTCCTCTAAATTTATTTCAATCACATCACACCATATAT AACATTTATATATCACTTATCTTTTTTCTCTTTCACTCTACAATTTTGGTGCGCATTAAACATTATTAGTTTTCCCAAAG AGAGAATAGAATAATATTTTATTCACGCTTTAATACACCAAACGAGATAGGAATAAAAAAATAGGAAAATAAGTGATATA ATAGGTTATTGATGTGATATAGTAAGAAAAAATAAGTAGAAATGAAATAAAGGAAAGTTGGTATAGATGAATCACTTCAT AAGAAATGGTAGGTTGACTGGCTGGCTGAGTACGCCACGTCGTGCAATCAATGGGTTATTCGATTGATTGTATTGTTAAG AATCACCCTTAGAATTCGATGGACTTATCACAATTCATGCGGTTCTAAGTACTACTATAAAGAAATAGGCTTGCACCTTT AGCAACCGCTATAGGTTTTGGTCAAGTGGTACTTGATCCAAGACATTAAGTTCAAAATGAAGTGGTTCTGCATGCACGCA GGCAGATACATTGACCGGGCAAGCTTTTGTAAGTGCTTGACATTACAATGTACAAGTTGACTGTCTTTTCGCTTTTTGAG TGACGTTCAAACATGATCATGATTTAAATGTTGGCTTTGAATTTGATTGTTGTCTTTTTTAATTAAATGCATGTGCAATA TCCATCCACATGCAGCAACATGATGATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATTATGGGGTGCAC TTCAACTCTTACCAAACAGGTAACTGACAACTTTTTTGACTCAGAAATATATGAACTTTGTTTCTCATATTGCCGACTAG AGAAAGAGAAAAGAGGGTCAGGAATTAATAATTAATCTAGTTAAAAAAATTCATTTGAATTACAGTAAAGACTAGCTAAA ATCCAACTTCATCTATCTTTTCCTCTTTATTTGTATTTTGGTTATGATATATATTCTATCAACTTTTCGACTCGTTATAA GGAAAAATACTAATTTTTTTTTTGAAGGGAAGGAAAAATACTAATTGAGAAAAGGATATATAGGAGCAATTCCTAAGTGT GCTTCATCTCACAAAGCTAACCCTAATATAATTATGTTTTCATTATATGCATGAATGAATGCCCTCACAGTCACAGGAGT CATCCATGGCAAACCCACAAGAAGCTGAGTGGTTGAAGTACTCTTCTTACTGGCCACACCCTGACCATCATTGATGCTTG AAGCTTCAATTAAGTCTCTTTCCAACAAAAGGCCAAGTAAATCATCCACGTGCATGGTTTTGCTCTTTTTCTTTCTTTCT TTTCCAATGGCAATATTGGGGACCTTAAGCTTTGCAACGAAACTAGTTGTTAGAAACAAAAAGATCAAAAGGAACGAAAA GAAACACATGCAACTCTCTCTAAAGACCTGAAGCACATTCATATCCTGGTGCTAGCTGCATGAAAATCATCACTAATGTG ATTACATTATCATCCCATCTTATTATTTTTTTATTTCGACATGTTTGTATAATTCTCACTTTTCCTCTTTTTTACACCAC AAATATATTATATATATGTATACCAATGAGTTTGTAATTGTATAGATGAAATTTTTACATCAAACCTACTAAGATCATGA TTTGACAATATTGTACCAAACGGTGATGTTTTGGTATTTTTATAAATGAAATTTACGCAAATGATTAATTTGTATAATAT TACGCGCGCACGGCTTTACTTCTCCAAAGTCATTTATCATTTGGTGAAGGAGGGAACCGAAG
CDS sequence (LotjaGi4g1v0443500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAACATGAGCAACTTGAGTTCTTTCAGCAGCTCTGGTCTCATAGATTCCAGGCTTGAAGAGCATCAATTGTGTAG ATCTAAACAGTGCCCTAGTTGTGGACACAAGTTTGAAGGGAAGCCGGATTGGCTTGGTCTACCAGCAGGAGTTAAGTTTG ATCCAACAGACCAAGAACTCATGGAACATCTTGAAGCCAAGGGAAAGGATATGAAATCACACCCTTTGATTGATGAGTTC ATTCTCACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAAAAAATTCCAGGAGTATCAAGAGATGGGTTGAG TAGACACTTCTTCCACAGACCATCAAAGGCATACACAACAGGTACAAGAAAAAGGAGAAAGATTCAAACTGAATGTGATC ACTTGCAACAAGGAGGAGAAACCCGTTGGCACAAAACTGGGAAAACAAGACCAGTGATTGTGAATGGAAAACAAAAAGGG TGCAAGAAAATTCTAGTCCTGTATACCAATTTTGGGAAGAACAGAAAACCAGAAAAGACAAACTGGGTGATGCACCAGTA CCATCTGGGACAGAATGAAGAAGAGAAAGAAGGGGAACTTGTGGTGTCAAAGATATTTTATCAGACACAGCCAAGGCAGT GTAATTGGTCTGAGAAAAGTGCAGCAACAACAACAACAACAACAAATGGTGAAGGAAGTGGAGACCCTAACTACAGTGGA AGTGGTAGTTGCTCTTCTAAGGAAGTGGTTACTCAAAGAGATGAGATGTCTGCTGCTGTTGTTGGGGTTACTCCAATGAC AAGCTTCACCACTGCTTTGGATATTCAGCACCTAAAATCTGACCATTTAAGCTTCTTCCCATTCAGAAAAAGCTTGCATG AGGTTGGAATAGGAGAAGCTTCGAGGACATCAAGAGAAGTTCAAGCATCAGGCTCATGCGAGGAAGAAGTACATGAACAA CGGCATGTAGCACATCATGATCATCATCAACAACAACAACAACAACAGATTGCAACGACATCGTTCCACATGATCAGTAG GCCTTCGCATCCCATCTCCACAATCATCTCTCCACCACCTCTCAACCACACATCCATCAATATCCTAGACGACAATTCTT ACCAAGTCTCCACAACAACAATGATGCTCCAAAATGATAATTTTCAGCAACATGATGATAAACTAGGAGGAAGGTCTGCG TCTGGTTTGGAGGAACTCATTATGGGGTGCACTTCAACTCTTACCAAACAGTCACAGGAGTCATCCATGGCAAACCCACA AGAAGCTGAGTGGTTGAAGTACTCTTCTTACTGGCCACACCCTGACCATCATTGA
Protein sequence (LotjaGi4g1v0443500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNNMSNLSSFSSSGLIDSRLEEHQLCRSKQCPSCGHKFEGKPDWLGLPAGVKFDPTDQELMEHLEAKGKDMKSHPLIDEF ILTIEGEDGICYTHPEKIPGVSRDGLSRHFFHRPSKAYTTGTRKRRKIQTECDHLQQGGETRWHKTGKTRPVIVNGKQKG CKKILVLYTNFGKNRKPEKTNWVMHQYHLGQNEEEKEGELVVSKIFYQTQPRQCNWSEKSAATTTTTTNGEGSGDPNYSG SGSCSSKEVVTQRDEMSAAVVGVTPMTSFTTALDIQHLKSDHLSFFPFRKSLHEVGIGEASRTSREVQASGSCEEEVHEQ RHVAHHDHHQQQQQQQIATTSFHMISRPSHPISTIISPPPLNHTSINILDDNSYQVSTTTMMLQNDNFQQHDDKLGGRSA SGLEELIMGCTSTLTKQSQESSMANPQEAEWLKYSSYWPHPDHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 421 | 418 | 2.1E-173 | – | |
PANTHER | 4 | 421 | 418 | 2.1E-173 | – | |
SUPERFAMILY | 43 | 208 | 166 | 5.49E-37 | ||
ProSiteProfiles | 47 | 208 | 162 | 31.822 | ||
Pfam | 48 | 189 | 142 | 4.5E-23 | ||
Gene3D | 56 | 213 | 158 | 2.8E-24 | ||
MobiDBLite | 216 | 250 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0443500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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