Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi4g1v0443500.3

Overview

Field Value
Gene ID LotjaGi4g1v0443500
Transcript ID LotjaGi4g1v0443500.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description NAC domain protein; TAIR: AT4G29230.2 NAC domain containing protein 75; Swiss-Prot: sp|O49459|NAC73_ARATH NAC domain-containing protein 73; TrEMBL-Plants: tr|A0A151TKC8|A0A151TKC8_CAJCA NAC domain-containing protein 8; Found in the gene: LotjaGi4g1v0443500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:81690814..81695886) extracted from Lotus japonicus Gifu genome v1.2.

TTTCTGTTACACTTCCCTCTTTTCTTCATCCTCCTTCACCTGCTTCTTGCTCCTCTCTTCTTATCCTTCTACAACACTTT ATTTTTCTGCATATTCTCATCCTTATTCTGCAGAATTTTCATTACCATAGATTTGATTCATTCTCTAAAACAGCCACATG TATGGTAGAGAATTATTCTCTATTTTCCCCCCTTTTTTATATTTCAAGGGTTTTTTTTTACTCTTTATTTATCATTTATG TTGGTGTCTGTATAGCTAGTTTCTGAATATGATCAGCAACTTGTGAAAGCCAAAACAAACTTCTTATTATTCTTTTATTT TCTCTTTCAGGTCACTGGCATCACTTTTGTTGTTGGTGTTATAATTCAGGTCACTGACAATGATTGAAACATATCATCCC ATTTTTCCTATTGATCTTTTAGAAAAAAATTAGCTATGATCTCAACAAGCTCTTGGATTCTCCTGTGATATATATATAGA AGAGATATGCACTATTCATTCTTCCAATTCAAAACCTTATCATAAAGTTTGATCAAGAGAGGTAGCATATCCATCACAAT CAAGCACTTTCAGAAGCAGAACATGAATAACATGAGCAACTTGAGTTCTTTCAGCAGCTCTGGTCTCATAGATTCCAGGC TTGAAGAGCATCAATTGTGTAGATCTAAACAGTGCCCTAGTTGTGGACACAAGTTTGAAGGGAAGCCGGTACGGAAAAAT CTCAGTAATATTCTTTTCTTCAAGAAAAAGCCTTTGACAAAATGAAGAATCATACCAGTAAACTTTACCATATTCATATT CTCAATGCCGTTTCATAATTGTAATTAATTAAATGGAGCATTTATATGGTATCCCTTTTCTCCTTTAGGCTTTGTCTACC TAGCAATTACTAAAGTTTTAGAATTTGTTGAAGTTTTGATAATCCTCTTTATTTTATATTCCCTCTCTCTTTTCTCTTTC TTATATTCTTCTTATCTTTCTCCCTTTAACTTTTTTTTTTTTCATTTGAATTGCAAATAGGATTGGCTTGGTCTACCAGC AGGAGTTAAGTTTGATCCAACAGACCAAGAACTCATGGAACATCTTGAAGCCAAGGGAAAGGATATGAAATCACACCCTT TGATTGATGAGTTCATTCTCACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAAAAAATTCCAGGTTGATCA ATATTAAGATATATAGAAAAATTGAAACACCCTCTATAGCTCTAACTTCTTCAAGCTGATCAAGTGTTTGTGGTTTCCTT ATTATTATTAAGAACTATACTAAGAGTTAAGAAAACACAAGAATTTGTAGTTATCACTCACTATGCCATGATTTCTGTTA AGAACAATGTTATATGTTACGAAGGAAAATTGCAGGAAATGTTGGTGTGGCCAAGTTAACTGGTGTAGTTTTACAAAAAT CATGGGGGTAGTGAGTAATAACTAACTCTTCCTGTATTTCTTATCGTGACAATTAGTATTTTCCTTTCTGTCAAATACCA TAGTTAGCAATGCCCCATCATCAACATATTGCTTGTAGTTTTCTTTCGTAACATATAACATTGTTGTATTATTTAACATT TTATATAAAGAACTCCCTTGATATTTATAAGAAACTTAATGAAGAGGGTTCGCCTAATGGTTGATCTAACTTTGATTTTG GTTTTGTGGTTAATTTTCAGGAGTATCAAGAGATGGGTTGAGTAGACACTTCTTCCACAGACCATCAAAGGCATACACAA CAGGTACAAGAAAAAGGAGAAAGATTCAAACTGAATGTGATCACTTGCAACAAGGAGGAGAAACCCGTTGGCACAAAACT GGGAAAACAAGACCAGTGATTGTGAATGGAAAACAAAAAGGGTGCAAGAAAATTCTAGTCCTGTATACCAATTTTGGGAA GAACAGAAAACCAGAAAAGACAAACTGGGTGATGCACCAGTACCATCTGGGACAGAATGAAGAAGAGAAAGAAGGGGAAC TTGTGGTGTCAAAGATATTTTATCAGACACAGCCAAGGCAGTGTAATTGGTCTGAGAAAAGTGCAGCAACAACAACAACA ACAACAAATGGTGAAGGAAGTGGAGACCCTAACTACAGTGGAAGTGGTAGTTGCTCTTCTAAGGAAGTGGTTACTCAAAG AGATGAGATGTCTGCTGCTGTTGTTGGGGTTACTCCAATGACAAGCTTCACCACTGCTTTGGATATTCAGCACCTAAAAT CTGACCATTTAAGCTTCTTCCCATTCAGAAAAAGCTTGCATGAGGTACATAAATATAAACCATAAAGTAATGAAACTTGA ATATACAAACCCCCAATAAACACCTCATTTTGCTATCTAGTTCTCTTCTTATATATATATCATATCAATTACTTCTTTCT TTTTAATAATGATATTTAGACATCCAAACAATATATACACATTTTTTTATTAAATGCATTACTTCTCTCTTCTATTTTTT CCCCACTGGGGGTTGTTCTCAAGTATGATCTAGCTTCTAGAAAAATTCTTTTGCTTTGGGAAAAAAAACTCTATGCTCAA AATGGTGAAAAAAAACTGAAAGGGGTTAAGGAAGCTGTTGACATAACACCATTGCTTGCATATACCGCATGAAATTTGTG GACCTGGCCTGATATTAAATCAATGTCAGCTAACAATCACTTCTTTATTTCTCTTTGATCTCATTGATCTCATTCCTACA TATATTTTCTTCATATCTCATTTTTTAATCAAATTTTATATTATATTATTTATTTCTCTTCATGTATTTTAATTTTATCT CTCCCTTATGGTGTATTTGGAGGTTTCAGCCAAACTTTTTTTCATACCTAAATAAACACAAAATGTTGAAAAAGATTAAG GAGAGGTGAGGTGATAATAATGGACTAGCTAGCTATACCTAGGTAGATATTTAGGTGATATTATATTTGTAGTTTACACT TAATTTTCAGATGATGATCGATGGGTGTTGCAGGTTGGAATAGGAGAAGCTTCGAGGACATCAAGAGAAGTTCAAGCATC AGGCTCATGCGAGGAAGAAGTACATGAACAACGGCATGTAGCACATCATGATCATCATCAACAACAACAACAACAACAGA TTGCAACGACATCGTTCCACATGATCAGTAGGCCTTCGCATCCCATCTCCACAATCATCTCTCCACCACCTCTCAACCAC ACATCCATCAATATCCTAGACGACAATTCTTACCAAGTCTCCACAACAACAATGATGCTCCAAAATGATAATTTTCAGGT AATCATCACCCAAATTAAATCCCACTTCCCAAAGATGCTTATATAGTTTTTACACATTTTCCCCATGATAAAAACTACTT CACTCATTAATCATGTTTTTATTTGTCATAAAAATAATTTTCAGTTAATTTCTTACTAACGCAAACAAACACCATTTTTT TTCCTCTAAATTTATTTCAATCACATCACACCATATATAACATTTATATATCACTTATCTTTTTTCTCTTTCACTCTACA ATTTTGGTGCGCATTAAACATTATTAGTTTTCCCAAAGAGAGAATAGAATAATATTTTATTCACGCTTTAATACACCAAA CGAGATAGGAATAAAAAAATAGGAAAATAAGTGATATAATAGGTTATTGATGTGATATAGTAAGAAAAAATAAGTAGAAA TGAAATAAAGGAAAGTTGGTATAGATGAATCACTTCATAAGAAATGGTAGGTTGACTGGCTGGCTGAGTACGCCACGTCG TGCAATCAATGGGTTATTCGATTGATTGTATTGTTAAGAATCACCCTTAGAATTCGATGGACTTATCACAATTCATGCGG TTCTAAGTACTACTATAAAGAAATAGGCTTGCACCTTTAGCAACCGCTATAGGTTTTGGTCAAGTGGTACTTGATCCAAG ACATTAAGTTCAAAATGAAGTGGTTCTGCATGCACGCAGGCAGATACATTGACCGGGCAAGCTTTTGTAAGTGCTTGACA TTACAATGTACAAGTTGACTGTCTTTTCGCTTTTTGAGTGACGTTCAAACATGATCATGATTTAAATGTTGGCTTTGAAT TTGATTGTTGTCTTTTTTAATTAAATGCATGTGCAATATCCATCCACATGCAGCAACATGATGATAAACTAGGAGGAAGG TCTGCGTCTGGTTTGGAGGAACTCATTATGGGGTGCACTTCAACTCTTACCAAACAGGTAACTGACAACTTTTTTGACTC AGAAATATATGAACTTTGTTTCTCATATTGCCGACTAGAGAAAGAGAAAAGAGGGTCAGGAATTAATAATTAATCTAGTT AAAAAAATTCATTTGAATTACAGTAAAGACTAGCTAAAATCCAACTTCATCTATCTTTTCCTCTTTATTTGTATTTTGGT TATGATATATATTCTATCAACTTTTCGACTCGTTATAAGGAAAAATACTAATTTTTTTTTTGAAGGGAAGGAAAAATACT AATTGAGAAAAGGATATATAGGAGCAATTCCTAAGTGTGCTTCATCTCACAAAGCTAACCCTAATATAATTATGTTTTCA TTATATGCATGAATGAATGCCCTCACAGTCACAGGAGTCATCCATGGCAAACCCACAAGAAGCTGAGTGGTTGAAGTACT CTTCTTACTGGCCACACCCTGACCATCATTGATGCTTGAAGCTTCAATTAAGTCTCTTTCCAACAAAAGGCCAAGTAAAT CATCCACGTGCATGGTTTTGCTCTTTTTCTTTCTTTCTTTTCCAATGGCAATATTGGGGACCTTAAGCTTTGCAACGAAA CTAGTTGTTAGAAACAAAAAGATCAAAAGGAACGAAAAGAAACACATGCAACTCTCTCTAAAGACCTGAAGCACATTCAT ATCCTGGTGCTAGCTGCATGAAAATCATCACTAATGTGATTACATTATCATCCCATCTTATTATTTTTTTATTTCGACAT GTTTGTATAATTCTCACTTTTCCTCTTTTTTACACCACAAATATATTATATATATGTATACCAATGAGTTTGTAATTGTA TAGATGAAATTTTTACATCAAACCTACTAAGAT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0443500.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATAACATGAGCAACTTGAGTTCTTTCAGCAGCTCTGGTCTCATAGATTCCAGGCTTGAAGAGCATCAATTGTGTAG ATCTAAACAGTGCCCTAGTTGTGGACACAAGTTTGAAGGGAAGCCGGATTGGCTTGGTCTACCAGCAGGAGTTAAGTTTG ATCCAACAGACCAAGAACTCATGGAACATCTTGAAGCCAAGGGAAAGGATATGAAATCACACCCTTTGATTGATGAGTTC ATTCTCACTATTGAAGGAGAAGATGGGATTTGTTACACCCATCCTGAAAAAATTCCAGGAGTATCAAGAGATGGGTTGAG TAGACACTTCTTCCACAGACCATCAAAGGCATACACAACAGGTACAAGAAAAAGGAGAAAGATTCAAACTGAATGTGATC ACTTGCAACAAGGAGGAGAAACCCGTTGGCACAAAACTGGGAAAACAAGACCAGTGATTGTGAATGGAAAACAAAAAGGG TGCAAGAAAATTCTAGTCCTGTATACCAATTTTGGGAAGAACAGAAAACCAGAAAAGACAAACTGGGTGATGCACCAGTA CCATCTGGGACAGAATGAAGAAGAGAAAGAAGGGGAACTTGTGGTGTCAAAGATATTTTATCAGACACAGCCAAGGCAGT GTAATTGGTCTGAGAAAAGTGCAGCAACAACAACAACAACAACAAATGGTGAAGGAAGTGGAGACCCTAACTACAGTGGA AGTGGTAGTTGCTCTTCTAAGGAAGTGGTTACTCAAAGAGATGAGATGTCTGCTGCTGTTGTTGGGGTTACTCCAATGAC AAGCTTCACCACTGCTTTGGATATTCAGCACCTAAAATCTGACCATTTAAGCTTCTTCCCATTCAGAAAAAGCTTGCATG AGGTTGGAATAGGAGAAGCTTCGAGGACATCAAGAGAAGTTCAAGCATCAGGCTCATGCGAGGAAGAAGTACATGAACAA CGGCATGTAGCACATCATGATCATCATCAACAACAACAACAACAACAGATTGCAACGACATCGTTCCACATGATCAGTAG GCCTTCGCATCCCATCTCCACAATCATCTCTCCACCACCTCTCAACCACACATCCATCAATATCCTAGACGACAATTCTT ACCAAGTCTCCACAACAACAATGATGCTCCAAAATGATAATTTTCAGCAACATGATGATAAACTAGGAGGAAGGTCTGCG TCTGGTTTGGAGGAACTCATTATGGGGTGCACTTCAACTCTTACCAAACAGTCACAGGAGTCATCCATGGCAAACCCACA AGAAGCTGAGTGGTTGAAGTACTCTTCTTACTGGCCACACCCTGACCATCATTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0443500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNNMSNLSSFSSSGLIDSRLEEHQLCRSKQCPSCGHKFEGKPDWLGLPAGVKFDPTDQELMEHLEAKGKDMKSHPLIDEF ILTIEGEDGICYTHPEKIPGVSRDGLSRHFFHRPSKAYTTGTRKRRKIQTECDHLQQGGETRWHKTGKTRPVIVNGKQKG CKKILVLYTNFGKNRKPEKTNWVMHQYHLGQNEEEKEGELVVSKIFYQTQPRQCNWSEKSAATTTTTTNGEGSGDPNYSG SGSCSSKEVVTQRDEMSAAVVGVTPMTSFTTALDIQHLKSDHLSFFPFRKSLHEVGIGEASRTSREVQASGSCEEEVHEQ RHVAHHDHHQQQQQQQIATTSFHMISRPSHPISTIISPPPLNHTSINILDDNSYQVSTTTMMLQNDNFQQHDDKLGGRSA SGLEELIMGCTSTLTKQSQESSMANPQEAEWLKYSSYWPHPDHH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31079
4 421 418 2.1E-173 –
PANTHER
PTHR31079:SF31
4 421 418 2.1E-173 –
SUPERFAMILY
SSF101941
43 208 166 5.49E-37
IPR036093
ProSiteProfiles
PS51005
47 208 162 31.822
IPR003441
Pfam
PF02365
48 189 142 4.5E-23
IPR003441
Gene3D
G3DSA:3.30.310.150
56 213 158 2.8E-24
IPR036093
MobiDBLite
mobidb-lite
216 250 35 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0443500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…