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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0443900 |
Transcript ID | LotjaGi4g1v0443900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Derlin; TAIR: AT4G29330.1 DERLIN-1; Swiss-Prot: sp|Q8VZU9|DERL1_ARATH Derlin-1; TrEMBL-Plants: tr|I3SV13|I3SV13_LOTJA Derlin; Found in the gene: LotjaGi4g1v0443900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81721841..81724758) extracted from Lotus japonicus Gifu genome v1.2.
AATTACGGGTTTCGGTGGCACTTGCGAGGTGGATGCACGGAACTGGAGCAGAAGCTTCTGGGTCTACGAGACACGGTTTC AGAAGGGGAGAAATTCTCAACTCTTTTCTGAATTCTCCACTTTCTAGGGTTTCGTTTCAGCAATCATCCTCACTCCGCTA CCGCTATGTCTTCTCCCGCTGAGTAATTCCCATTATCATTCTCTCTTTTCTGAAGATCATTGTCGAGTTCATGAATCTCT TGTTGTTAATTCTCTGAATTTTTCAATCACTTTGCTTAATGCTTCAAATTTTGCTTGCTTTCAGGTGGTACAACACACTT CCACCCATAAGCAAGGCTTATGGCACCGCTTGCCTTGCCGCTACCGCAGCTTACCAACTTGGGTTGTATCAACCGGTTCA CATTGCACTGTTATACCCACAAGTTTTCTATGGTTTTCAGGTCACAATTCCATATAATCCATTAATTGAATCCCTATTTG CTTGCCCTTGATATGTAGAGTTTTTATATGTAGGATAGATTGAGTAATGTGAATGTTCTTTTGTATTCATGATCAATGTT AACCAAATTAGAAGAAACATCATACATGCTTACTGTTTGTAACATAACCATATTTGCAGCCTTACACTACCCTGAACTTA CTAACTAGGTTATTCTAGGCTTTCACAAACTTGTAGCGAACAACCTTGTCGTGTTTTTCTTTCTAATCAAACTATTTAAT ATTTAGTAAATCATTTGTAATGTCAATCCTCTGTAGGTTTGGAGGCTGTTCACAAACTTCTTTTTCCTTGGACCATTCTC TATCAACTTTGGGATCCGTCTCTTAATGATGTAAGTTATTCAAAGATAATGGGCATGACTGCATTACGACCGTTTCCACT TTATTTCATATGAATTAATTCGCATAATCTACAGAGCAAGGTATGGTGTCCAACTTGAGAAGGGACCATTTGATAGACGG ACCGCTGATTTCTTGTGGATGATGATATTTGGAGGCTTCGCACTACTGGTATATGAGATCATCTACATATCTTTGTCATC TTATGCTTATTTATGTAATCCTTTTCCTTGAAAATGTTTGCAGTTTCTTTTTGTAGAAGCTGTTCTAGTGGCTTTGTTTT ATGGAAATGGTCAAGAAGAAGATGAGATCTTCTTTTTAATAAAAGAGATGGCTAACTATGGTTGATCAATTTTATTTGTT TTTATTTGTTTTCCTCATTTAGTCATTATGCCTGCAAAAGTTGTACCCTATGTGCCTTTCAGAATACAACACTAGTCATA GAAAACATAAGTGATAAATTATGTTATACTTTTTAGTGATTGATTTATGCAAAGTTAGAAGGAAAAATTTAATTGTCGAG GTTGATAGATGATGAGGGATTTGAGGATGATAAAATAAATTATTCATGATGAATAAATTTAATTGTTTTCCTGATTGTTT TGTATATAGTGTCATTTTTTACTTAATGTCCTAACATTAGTTAATTCCTTTGAAATCTAGGTTTTGTCTGCTATCCCCTT TCTTTGGACCCCATTTTTGGCAATATCTGTTGTTTTTATGCTCCTTTATATTTGGAGTAGAGAATTTCCAATTGCTCAAA TCAACATATATGGACTTGTTTCACTTAAGGTATGTTTCAATCTTGTTTAATTTATCCTTGTTTCCTTGTTTTTATGCATC GATTACATGAGCTGAATGAAGCTTATTTTTCATTGTCTAATGGAGGAGCCAATTGTTGAATTACTTTTCAGGCCTTCTAT CTACCATGGGCGATGCTTGCTTTGGATGTCATTTTTGGTTCACCTATTATACCTGATCTGTTAGGTATCATTGCAGGACA TCTTTACTACTTCTTGACAGTGTTGCATCCACTAGCAGGTGGAAAAAACATTTTGAAGACTCCAATGTGGGTGTATCCTT TTGACTTTTGTTTCTTAAAGTGTTTGGGCACATATTGCTGTCATTTAAAGCATTTTTCATTTGTACAACATGAAACGTTA TTTATTCTAATACTTTCATGAAGAATTTCCCCTCCTCTCTAAATTCTTCCATTTAATCATGCCAATAATTGTTCCTTTCC TCATACTCTTTGCTGAATGCAACGGCAACCGCGGCCAAAACAGTCAAATAATAATTTGTTCTTTTTCTTTGGTGGATGTT TTCTAACTTTCAAGAACACGAAATTTGACCAAAATCTGCCTGCTAGTTTTGTTGTTCTTAACTGTTAATTTTCCAGACAT AAATTGGTTGCAAGGTGGAGAATTGGAGCCCCAGCTGTTGTTAGCCGTGCCCAGCCTGTTAATAACGCTCGGCAAGAGAG CAGTTCAGGAGTTTTCCGAGGAAGATCCTATCGTTTGAATGAATAGATGCAATAAATGGAAAGGGGTGGATTTTCCTGAC AAGCTGCTCATCTTGTTGGTTGGTGACTTGACACCACTACTAACACTTGGAGTTAATCATCCGTTGTGAATTTGAATGGA AGTTGTGTATGGAACTTGACTGTTCATTGAAAGCACACTTTCTTTTGGGGTGCCTTATAATTTTCAGTTTCCTTTTTTAG GAATTTATACTTGTAACAAAGAGTTGGACAAAGTTCATGAATTGAAGTAGTTGTCAAATTTTCATCCTGAATTATTCTCA CTTGTGTTTAGCAAAATATGTACACTGGTGTATTCAGTATAAAAGGTGGTTCCAAAGTATGCACCTCCAACCTCAATACT TGTTCCAAGAAACCAAGGTGTCCTTTGTTCAAACAAATGAAGCAAAGTTTGATCGGATAGCAAATAGAATATTCAGTTTT TTTGACCCCAACTCTAATGGTCTGGTACTATGGTTTAAAAAGTTTAATTCTTATTCATTTTGTTGAACATAATGACCATG GTTTTCGGATCATTAGATTTGACACCCCATTCATTAGA
CDS sequence (LotjaGi4g1v0443900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCTCCCGCTGAGTGGTACAACACACTTCCACCCATAAGCAAGGCTTATGGCACCGCTTGCCTTGCCGCTACCGC AGCTTACCAACTTGGGTTGTATCAACCGGTTCACATTGCACTGTTATACCCACAAGTTTTCTATGGTTTTCAGGTTTGGA GGCTGTTCACAAACTTCTTTTTCCTTGGACCATTCTCTATCAACTTTGGGATCCGTCTCTTAATGATAGCAAGGTATGGT GTCCAACTTGAGAAGGGACCATTTGATAGACGGACCGCTGATTTCTTGTGGATGATGATATTTGGAGGCTTCGCACTACT GGTTTTGTCTGCTATCCCCTTTCTTTGGACCCCATTTTTGGCAATATCTGTTGTTTTTATGCTCCTTTATATTTGGAGTA GAGAATTTCCAATTGCTCAAATCAACATATATGGACTTGTTTCACTTAAGGCCTTCTATCTACCATGGGCGATGCTTGCT TTGGATGTCATTTTTGGTTCACCTATTATACCTGATCTGTTAGGTATCATTGCAGGACATCTTTACTACTTCTTGACAGT GTTGCATCCACTAGCAGGTGGAAAAAACATTTTGAAGACTCCAATGTGGGTACATAAATTGGTTGCAAGGTGGAGAATTG GAGCCCCAGCTGTTGTTAGCCGTGCCCAGCCTGTTAATAACGCTCGGCAAGAGAGCAGTTCAGGAGTTTTCCGAGGAAGA TCCTATCGTTTGAATGAATAG
Protein sequence (LotjaGi4g1v0443900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSPAEWYNTLPPISKAYGTACLAATAAYQLGLYQPVHIALLYPQVFYGFQVWRLFTNFFFLGPFSINFGIRLLMIARYG VQLEKGPFDRRTADFLWMMIFGGFALLVLSAIPFLWTPFLAISVVFMLLYIWSREFPIAQINIYGLVSLKAFYLPWAMLA LDVIFGSPIIPDLLGIIAGHLYYFLTVLHPLAGGKNILKTPMWVHKLVARWRIGAPAVVSRAQPVNNARQESSSGVFRGR SYRLNE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 51 | 51 | - | – | |
PANTHER | 1 | 245 | 245 | 2.4E-119 | – | |
PANTHER | 1 | 245 | 245 | 2.4E-119 | – | |
SUPERFAMILY | 10 | 186 | 177 | 5.62E-14 | – | |
Pfam | 11 | 201 | 191 | 1.2E-42 | ||
TMHMM | 20 | 42 | 23 | - | – | |
Phobius | 52 | 71 | 20 | - | – | |
TMHMM | 55 | 77 | 23 | - | – | |
Phobius | 72 | 91 | 20 | - | – | |
Phobius | 92 | 109 | 18 | - | – | |
TMHMM | 97 | 131 | 35 | - | – | |
Phobius | 110 | 114 | 5 | - | – | |
Phobius | 115 | 132 | 18 | - | – | |
Phobius | 133 | 143 | 11 | - | – | |
TMHMM | 144 | 166 | 23 | - | – | |
Phobius | 144 | 167 | 24 | - | – | |
Phobius | 168 | 172 | 5 | - | – | |
Phobius | 173 | 192 | 20 | - | – | |
TMHMM | 176 | 198 | 23 | - | – | |
Phobius | 193 | 246 | 54 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0443900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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