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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0444000 |
| Transcript ID | LotjaGi4g1v0444000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Profilin; TAIR: AT2G19770.1 profilin 5; Swiss-Prot: sp|A4KA45|PROF4_CORAV Profilin-4; TrEMBL-Plants: tr|I3S141|I3S141_LOTJA Profilin; Found in the gene: LotjaGi4g1v0444000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81725627..81727548) extracted from Lotus japonicus Gifu genome v1.2.
TAGGAAAATAGGAAGAGTTGAGTCCTAAAATGAAGGGGAAGGTGAAAGTGTGGCAGCATTTGGATGGAGGTAAAGGGACG GTAGAGCGTGCATCATCCCTCACAACCCTTATTTAAAAACATATATTTCAACCCTCACCAAAACCAAACACAATCACCAG AACAAGATTCATCAGAAACAAGGAAAAAAAAAACAAAGACAACAATGTCGTGGCAAACTTACGTTGATGACCATTTGATG TGTGACATTGATGGCACTGGCCACCACCTCACCGCCTCTGCCATCGTTGGCCATGATGGTTCCGTCTGGGCTCAGAGCAC TTCCTTCCCTCAGGTATATACAATATCTATGCATGTATATACAATATCTATGCATGTATATATCTGTGTGTCATGTCCAT GGATCCACCATTGCATCAAATACTCATACTATAACATGTTTGGATCAGTTTCTTCTTTTTCAGATTTATCTCTGACTCCA TAAGCTTCTTCTCATAATTGATTTTGGCTTCAAAATCAATTGTTGAAGAATTGCATGTCAGCTTTGCTTTCCAAATTATC TATCATAGCATGTTTGGATCAGCGTTGTCACGCTTGATTTTGGACAAAATTGATTTTGCTAAACCCGATTATGATAAAAG TGGGTTAAAGTGAATGATTTTACTTTGGACATTCCTGAAAAATTGACCTTTGTTGGGTAATGTTGTAAAATATAGTTGGA AAATCTCATAATAAATTATGTACAACGCAAAAATTACTTTCTCAGGCTTCTATGCAGAAATGATTTTGGGACTGCAATCA TTCTGCAATATGACTCACAAACATCTATATTGTGTCATCCAAAACTCGTTTTACTCCGTGAAAATTGATCCTGAGGTTCT TCTCAACAGGAAAACAAGCATACACTAATTGGATGTTGCTTCTTTGTGACAAATGTGTTGAATTTCTATTTTGTTTTCAT GGAATCGAGATTCTTCTAAATCATAGGATGACAATGTTTTGAAGAAGATTAGATTTAGGTAGTAGTCATGTTAGTTTTAT CTTGTGCCAATATTTGTCATCTGTTATTTGTATACTTCTTCTGCAGCTTAAGCCTCAGGAGATCACTGGTATCATGAAGG ATTTCGATGAACCAGGCTTCCTTGCTCCCACTGGCTTGCACCTTGGGGGAACCAAGTACATGGTCATTCAGGGAGAGTCT GGAGCTGTCATCCGTGGGAAGAAGGTAAACATTATTAGCATGTTCGGATCGTTTTCTCTTTCATCAGAATCAATTATGAA ACCTAAAAGCTACTCATAGAATCAGAAGCTCCTCTCCAAAATTAATTATGGTTTCAGAATCAATTGTAGAAGGATTTCCA AATATGCATATTGTGTCTCAATGATTCAATTCTACACAAGTTCTATAGTGTTCATAGCATTTCCTGTGCTTTAATTGTTT TGGCTTGTTTTTCAAGGAACTGACTCATGTGCTTGTTTGGGCAGGGATCTGGAGGCATCACCATAAAGAAAACTGGTCAA GCTCTGGTCTTTGGCATCTATGAGGAGCCTGTGACTCCTGGACAATGCAACATGGTTGTTGAGAGGTTGGGAGATTACCT CATCGACCAGGGTCTGTAGAAACTAGACCTATAATGATGATTTGAACATTAATTGTTTCTTGGATAATATACTTTGTTGT TTTCATATATTTGGGTCTGTATCTACTACTACATTTCGACCCTAAATTGGGAGTTGTTGCAGACAATAACTATTCGAGAA TTTAACACTTGTCTCTTGTTTGGATGTTTCATTTATCATCATAATGTTTCCCTTTCATTTCCACAAACAATATCTCATTC TTGCTCTACTGGTATTAAGCTTAACCACAAATAATCCAAAAGTAGGGGCCATATTAATGTCCTCAATCACTCGAAGATTT AG
CDS sequence (LotjaGi4g1v0444000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTGGCAAACTTACGTTGATGACCATTTGATGTGTGACATTGATGGCACTGGCCACCACCTCACCGCCTCTGCCAT CGTTGGCCATGATGGTTCCGTCTGGGCTCAGAGCACTTCCTTCCCTCAGCTTAAGCCTCAGGAGATCACTGGTATCATGA AGGATTTCGATGAACCAGGCTTCCTTGCTCCCACTGGCTTGCACCTTGGGGGAACCAAGTACATGGTCATTCAGGGAGAG TCTGGAGCTGTCATCCGTGGGAAGAAGGGATCTGGAGGCATCACCATAAAGAAAACTGGTCAAGCTCTGGTCTTTGGCAT CTATGAGGAGCCTGTGACTCCTGGACAATGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTCATCGACCAGGGTCTGT AG
Protein sequence (LotjaGi4g1v0444000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWQTYVDDHLMCDIDGTGHHLTASAIVGHDGSVWAQSTSFPQLKPQEITGIMKDFDEPGFLAPTGLHLGGTKYMVIQGE SGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 133 | 133 | 2.2E-80 | – | |
| ProSitePatterns | 1 | 8 | 8 | - | ||
| PRINTS | 1 | 14 | 14 | 7.1E-58 | ||
| PANTHER | 1 | 133 | 133 | 2.2E-80 | ||
| Gene3D | 1 | 133 | 133 | 8.7E-52 | – | |
| Pfam | 1 | 132 | 132 | 5.3E-43 | ||
| SMART | 1 | 133 | 133 | 4.4E-61 | ||
| SUPERFAMILY | 2 | 132 | 131 | 1.57E-51 | ||
| CDD | 2 | 132 | 131 | 6.51901E-58 | ||
| PRINTS | 3 | 12 | 10 | 1.6E-52 | ||
| PRINTS | 23 | 32 | 10 | 1.6E-52 | ||
| PRINTS | 29 | 42 | 14 | 7.1E-58 | ||
| PRINTS | 42 | 62 | 21 | 1.6E-52 | ||
| PRINTS | 54 | 68 | 15 | 7.1E-58 | ||
| PRINTS | 66 | 80 | 15 | 1.6E-52 | ||
| PRINTS | 73 | 82 | 10 | 7.1E-58 | ||
| PRINTS | 86 | 101 | 16 | 7.1E-58 | ||
| PRINTS | 102 | 115 | 14 | 1.6E-52 | ||
| PRINTS | 106 | 119 | 14 | 7.1E-58 | ||
| PRINTS | 115 | 132 | 18 | 1.6E-52 | ||
| PRINTS | 119 | 132 | 14 | 7.1E-58 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. |
Expression pattern of LotjaGi4g1v0444000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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