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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0444000 |
| Transcript ID | LotjaGi4g1v0444000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Profilin; TAIR: AT4G29340.1 profilin 4; Swiss-Prot: sp|A4KA45|PROF4_CORAV Profilin-4; TrEMBL-Plants: tr|I3S141|I3S141_LOTJA Profilin; Found in the gene: LotjaGi4g1v0444000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81725831..81727245) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGTGGCAAACTTACGTTGATGACCATTTGATGTGTGACATTGATGGCACTGGCCACCACCTCACCGCCTCTGCCAT CGTTGGCCATGATGGTTCCGTCTGGGCTCAGAGCACTTCCTTCCCTCAGGTATATACAATATCTATGCATGTATATACAA TATCTATGCATGTATATATCTGTGTGTCATGTCCATGGATCCACCATTGCATCAAATACTCATACTATAACATGTTTGGA TCAGTTTCTTCTTTTTCAGATTTATCTCTGACTCCATAAGCTTCTTCTCATAATTGATTTTGGCTTCAAAATCAATTGTT GAAGAATTGCATGTCAGCTTTGCTTTCCAAATTATCTATCATAGCATGTTTGGATCAGCGTTGTCACGCTTGATTTTGGA CAAAATTGATTTTGCTAAACCCGATTATGATAAAAGTGGGTTAAAGTGAATGATTTTACTTTGGACATTCCTGAAAAATT GACCTTTGTTGGGTAATGTTGTAAAATATAGTTGGAAAATCTCATAATAAATTATGTACAACGCAAAAATTACTTTCTCA GGCTTCTATGCAGAAATGATTTTGGGACTGCAATCATTCTGCAATATGACTCACAAACATCTATATTGTGTCATCCAAAA CTCGTTTTACTCCGTGAAAATTGATCCTGAGGTTCTTCTCAACAGGAAAACAAGCATACACTAATTGGATGTTGCTTCTT TGTGACAAATGTGTTGAATTTCTATTTTGTTTTCATGGAATCGAGATTCTTCTAAATCATAGGATGACAATGTTTTGAAG AAGATTAGATTTAGGTAGTAGTCATGTTAGTTTTATCTTGTGCCAATATTTGTCATCTGTTATTTGTATACTTCTTCTGC AGCTTAAGCCTCAGGAGATCACTGGTATCATGAAGGATTTCGATGAACCAGGCTTCCTTGCTCCCACTGGCTTGCACCTT GGGGGAACCAAGTACATGGTCATTCAGGGAGAGTCTGGAGCTGTCATCCGTGGGAAGAAGGTAAACATTATTAGCATGTT CGGATCGTTTTCTCTTTCATCAGAATCAATTATGAAACCTAAAAGCTACTCATAGAATCAGAAGCTCCTCTCCAAAATTA ATTATGGTTTCAGAATCAATTGTAGAAGGATTTCCAAATATGCATATTGTGTCTCAATGATTCAATTCTACACAAGTTCT ATAGTGTTCATAGCATTTCCTGTGCTTTAATTGTTTTGGCTTGTTTTTCAAGGAACTGACTCATGTGCTTGTTTGGGCAG GGATCTGGAGGCATCACCATAAAGAAAACTGGTCAAGCTCTGGTCTTTGGCATCTATGAGGAGCCTGTGACTCCTGGACA ATGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTCATCGACCAGGGTCTGTAG
CDS sequence (LotjaGi4g1v0444000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTGGCAAACTTACGTTGATGACCATTTGATGTGTGACATTGATGGCACTGGCCACCACCTCACCGCCTCTGCCAT CGTTGGCCATGATGGTTCCGTCTGGGCTCAGAGCACTTCCTTCCCTCAGGATTTCGATGAACCAGGCTTCCTTGCTCCCA CTGGCTTGCACCTTGGGGGAACCAAGTACATGGTCATTCAGGGAGAGTCTGGAGCTGTCATCCGTGGGAAGAAGGGATCT GGAGGCATCACCATAAAGAAAACTGGTCAAGCTCTGGTCTTTGGCATCTATGAGGAGCCTGTGACTCCTGGACAATGCAA CATGGTTGTTGAGAGGTTGGGAGATTACCTCATCGACCAGGGTCTGTAG
Protein sequence (LotjaGi4g1v0444000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSWQTYVDDHLMCDIDGTGHHLTASAIVGHDGSVWAQSTSFPQDFDEPGFLAPTGLHLGGTKYMVIQGESGAVIRGKKGS GGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 122 | 122 | 4.0E-68 | – | |
| Gene3D | 1 | 122 | 122 | 1.4E-43 | – | |
| ProSitePatterns | 1 | 8 | 8 | - | ||
| PANTHER | 1 | 122 | 122 | 4.0E-68 | ||
| Pfam | 1 | 121 | 121 | 1.3E-34 | ||
| SMART | 1 | 122 | 122 | 2.2E-50 | ||
| PRINTS | 1 | 8 | 8 | 2.5E-45 | ||
| CDD | 2 | 121 | 120 | 4.28626E-49 | ||
| SUPERFAMILY | 2 | 121 | 120 | 8.11E-45 | ||
| PRINTS | 3 | 12 | 10 | 1.7E-32 | ||
| PRINTS | 43 | 57 | 15 | 2.5E-45 | ||
| PRINTS | 55 | 69 | 15 | 1.7E-32 | ||
| PRINTS | 62 | 71 | 10 | 2.5E-45 | ||
| PRINTS | 75 | 90 | 16 | 2.5E-45 | ||
| PRINTS | 91 | 104 | 14 | 1.7E-32 | ||
| PRINTS | 95 | 108 | 14 | 2.5E-45 | ||
| PRINTS | 104 | 121 | 18 | 1.7E-32 | ||
| PRINTS | 108 | 121 | 14 | 2.5E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. |
Expression pattern of LotjaGi4g1v0444000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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