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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0444900 |
| Transcript ID | LotjaGi4g1v0444900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 2 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|A0A0S3SCC0|A0A0S3SCC0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0444900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81782855..81784900) extracted from Lotus japonicus Gifu genome v1.2.
GTGATGAGTCTGATGACCATTCTGAAGCCTAAGCCAAATCCACAGCAGCTTCTGAGGGAATGGCAGCGCAGGCTTCGCCA AGAGTGTCGCAACATTGAGCGGCAAATTGGCGGTAATCCCCCTTTCTCTCTCTGTTAAACCCTAATTAATTTCTTCTTCT AATTAATTGTGGTTATGCCTAATTTTTTGTATTTTTGGGTTTCAATTTAGATATACAGAGAGAAGAAAAAAATGTGCAGA AGGCGATTAGAGAAGCTGCCAAGATGAATGACATTGGCTCTGCAAAGGTTCTTTCTTTTCCTTTTTGCTGTTGATTTTCC AGTGTTGGTGCTTTCTTTTCTTTCATTCTGCATATCCCTAATTCATTGTATCTATTTTATTCTGATTGTAGTGGTTTTCT AGATGGGGTTATCCGAGCATTTAAGGTAAAATTGCAGGTTTTTTATCTAAATCTATCTATGAATGACATTGGACTTGTTA GTTGTTACTTGTTAGGACTGGTCAGTGGTCACAATATTCAAAAAATTAATGATAAAGCTATTTATGGGTTGTACTAGACT ACTCGTGTAGTATCCTTTAGACAGTTATTTTTTATATCTTCTGAAGTTCAAGGTTCAACAGCATAGTCAGTATTTTGAGA ACTTTTCTGCTTATGATGATATTTATGCAATTTGCAGGCACTCGCTAAGGAACTTGTGAGATCTAGAAAAACAGTGAACC GGCTTCATGAAAATAAGGCACAATTGAATTCAATATCAATGCATCTCGGAGAGAGTGTTGGTAGGTTTTACTGTTTTTGT CAACCATAACTTACATATTATGACTAGCAAATTAAAAAATGTCAAAGATGACTACTTGTGCTTGATCCCATTTGTTTGAT AATTGATTCTTAATTGAAAAAAAACTTCAATTTGCATCCATCACTCTTGGTATAGGGTGTTGGATATGTTGATGATCAAT TTGTTGGTTGTGGGGAAAAGAACAACTGACAACGATATGTATTTGACTCTGCTGAATTATTGTGGTATACTATGGTGATG AAATTGTTCTGTCCAATTTATAAGTTTAGTGAGGACTTTAAACCAAACCAGTAATAGAGGGGGAAGGAAGAGCGTGCAAG GGTGGTAGGTTGAGTCATGTGTTATCAGGTTCAGCTTTCTTATTTTCAGTATTTCTTATTTGTCCTGACACTATAACTAC TGTTACAAATCATATATATGTAATGATCTTGCTGTACCTGTTTTTATTCAATAGCTAAGTGTATTATTTAGATGATTTAT TTGTTGTTGTAGCTGTAGCTTCTTTTGCAATTAGTCATCGTGATAGATTTGAGTTATTACTTATTTGTTATATGGAAATT CATGATTTGGTTGCTTTTGCAGCTATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCTGAGGTTATGAAACTCGTTAA TAACCTCATGAAGGCTCCTGAAATGGCTGTAGCAATGCAAGAGTTCAGCAAAGAAATGACAAAGGGATGTTGCAACACTT CAAGGGTTGGGGAAAGAAAGCACTCCTTTAACTCCTCTATCCATTGTCTGTGGTTACAGAAGAGAGCTGCATAGTATTTA TCAGGAATGTTATCTCTTTCAGGCAGGCATTATTGAGGAGATAGTAAATGATGCTGTTGACACAGCACTAGACTCCGAGG ACATAGAAGACGAGATGGAAGAAGAAGTTGATAAAGTCTTAACTGCTATAGCTGGTGAGACAGCCGCGCAACTTCCTGAA TCTGTGAGGAAAGTAAAGCTGAAGCAACCTGCTCAAAGCGTTGGAGCCACAGAGGTATGTGCAGTTCATTTTCCTTATAA TCACTAATCAGGCTCTTTTCTGCCTGAGTTACACTAATTATGGAATCCATTAGCATTTGTAGGACGTGGCTATAGCCGAG GGTGTTGATGATGAGGAAGAAATGGAAGAAATAAGGGCTCGACTTGCTAAAGTTCGGTCACAAGTTTAGTCTTGCAGCCT CTACACTGCATCTATTTAACATATTTAGATTAGAACAGGCGACTAA
CDS sequence (LotjaGi4g1v0444900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCTGATGACCATTCTGAAGCCTAAGCCAAATCCACAGCAGCTTCTGAGGGAATGGCAGCGCAGGCTTCGCCAAGA GTGTCGCAACATTGAGCGGCAAATTGGCGATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCGATTAGAGAAGCTGCCA AGATGAATGACATTGGCTCTGCAAAGGCACTCGCTAAGGAACTTGTGAGATCTAGAAAAACAGTGAACCGGCTTCATGAA AATAAGGCACAATTGAATTCAATATCAATGCATCTCGGAGAGAGTGTTGCTATTGCTCGTACTGTGGGACATCTATCAAA GAGTGCTGAGGTTATGAAACTCGTTAATAACCTCATGAAGGCTCCTGAAATGGCTGTAGCAATGCAAGAGTTCAGCAAAG AAATGACAAAGGCAGGCATTATTGAGGAGATAGTAAATGATGCTGTTGACACAGCACTAGACTCCGAGGACATAGAAGAC GAGATGGAAGAAGAAGTTGATAAAGTCTTAACTGCTATAGCTGGTGAGACAGCCGCGCAACTTCCTGAATCTGTGAGGAA AGTAAAGCTGAAGCAACCTGCTCAAAGCGTTGGAGCCACAGAGCATTTGTAG
Protein sequence (LotjaGi4g1v0444900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLMTILKPKPNPQQLLREWQRRLRQECRNIERQIGDIQREEKNVQKAIREAAKMNDIGSAKALAKELVRSRKTVNRLHE NKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAVAMQEFSKEMTKAGIIEEIVNDAVDTALDSEDIED EMEEEVDKVLTAIAGETAAQLPESVRKVKLKQPAQSVGATEHL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 201 | 198 | 1.2E-118 | – | |
| PANTHER | 4 | 201 | 198 | 1.2E-118 | – | |
| Pfam | 19 | 184 | 166 | 8.2E-28 | ||
| Coils | 21 | 58 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi4g1v0444900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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