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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0445700 |
Transcript ID | LotjaGi4g1v0445700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | LINE-1 reverse transcriptase like; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RPJ0|A0A151RPJ0_CAJCA Retrovirus-related Pol polyprotein LINE-1; Found in the gene: LotjaGi4g1v0445700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81828458..81829939) extracted from Lotus japonicus Gifu genome v1.2.
GGGAAGGGGATCTCTTGCTTCCAAGACCTTGTCTTGGGGGGTTTCATAGCCCCAAGACTCGTGGAAAGCACCAAATCAAT CATCCACTTAGGGCTCCAAAAACATTATCAACATCTAAACAAAAATCACCCACTCCACCACACATACCCCCCCACGATTT AATCGACACGCGACACCTTCCTCGTTAGAACACACATTACGCTCCATCACTAGAATTAGAATACAACCTAAAGCAGACAG GGTATACATGACTTTGAATTTTCAAGAAATATGCTATTGTAAAGGACATTTGGTGGGGAGATTTCACAGGTTGTATAATT TGTCTCAAAACAAATATGCTATTGTAAAGGAGTTGGGGGGGTGGAGACATGGCAGGTGGGAGTGGAATTTTAAATGGAGA AGGGCGTTGCGTGGGAGGGAGGAGTTGTGGTTTGATACCCTGTTGAATATTATTAATAATGGTAGTTTGCAGGAGGGGAG GCCGGATAGATGGTTGTGGGAGCCAGGGGAGGAGGGTGCTTATTCAGTTAACTCAGCTTATTCTTTTTTGCAGGTGAGTG ATTTAGGAGTGTCTGACATCGATTTTCAATCAATCTGGTATGCATTTGCTCCCTCAAAGGTCAAAGCTTTTGCTTGGCGC ATGCTGCTAAATCGGATCCCGACTAAGGTGAATTTAAGGAGGAGAGGTGTCATTCCGGCAGAGGTGGAGGTATTATGTCC TTTTTATAATCGTATAGAAGAGTGTTGTGATCATTTGTTCTGTACGTGCTCACGGTCTTTTGATGTCTGGAATGCTGTCT ATCGGTGGTTGGGGTTTGAAACTGTATTGCCATCTTCATCAGAATCAGTTTTTAGCCAGTTCTCCTTTGTTGGCAGAAAC AAGAAACAACGACTTGCTGAGGTAACAGTGTGGATGGCGTCTTGCTGGTCCTTGTGGATAACTCGTAACAGTGTTATTTT CAAGGATGGTGTTTGGGACGGTGGTTTGGTTGTGGAATTAATCCAGGTTCGAACTTGGCATTGGTTAAAAGAGAAAGTGA GGGAGTTTCATTATTCATTATATGAATGGAAGTCAAATCCGGTCATATGCCTCTCTTCTCTTTGAATTTTGCTAGGGACA TGGGTTTTTGGCTACTGTTTGTGGTACGTTTGGAGTGGAGGTTGGGTTGTATTTTTTCTCTTCTGCTGTGCATTCTTGGC GTTGGACGTCTGTTGCCGTGGTTGCTTTTTGGGTTTGTATGTTGCTGCTATATGTTGGGGCATTCTTGGTTTATTTGGAG TAATAGTTTAAGTTTGTAAGGGAACTTAATCTGGTTTAGATTGTGTAGATGGGTTCTTTAAACTTTGTTTATTTTTTTTT TCTTTCTTTATTTTTCTCTCTTTCTTTTCTTGTATTTGGGTTTAGCACCCCTTGTGCTATTTTTGAATACAATTCTTTGA CTTACAAAAAAAACGTTACTTATATGAAATAGTTTAATAATA
CDS sequence (LotjaGi4g1v0445700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTTGAATTTTCAAGAAATATGCTATTGTAAAGGACATTTGGTGGGGAGATTTCACAGGTTGTATAATTTGTCTCA AAACAAATATGCTATTGTAAAGGAGTTGGGGGGGTGGAGACATGGCAGGTGGGAGTGGAATTTTAAATGGAGAAGGGCGT TGCGTGGGAGGGAGGAGTTGTGGTTTGATACCCTGTTGAATATTATTAATAATGGTAGTTTGCAGGAGGGGAGGCCGGAT AGATGGTTGTGGGAGCCAGGGGAGGAGGGTGCTTATTCAGTTAACTCAGCTTATTCTTTTTTGCAGGTGAGTGATTTAGG AGTGTCTGACATCGATTTTCAATCAATCTGGTATGCATTTGCTCCCTCAAAGGTCAAAGCTTTTGCTTGGCGCATGCTGC TAAATCGGATCCCGACTAAGGTGAATTTAAGGAGGAGAGGTGTCATTCCGGCAGAGGTGGAGGTATTATGTCCTTTTTAT AATCGTATAGAAGAGTGTTGTGATCATTTGTTCTGTACGTGCTCACGGTCTTTTGATGTCTGGAATGCTGTCTATCGGTG GTTGGGGTTTGAAACTGTATTGCCATCTTCATCAGAATCAGTTTTTAGCCAGTTCTCCTTTGTTGGCAGAAACAAGAAAC AACGACTTGCTGAGGTAACAGTGTGGATGGCGTCTTGCTGGTCCTTGTGGATAACTCGTAACAGTGTTATTTTCAAGGAT GGTGTTTGGGACGGTGGTTTGGTTGTGGAATTAATCCAGGTTCGAACTTGGCATTGGTTAAAAGAGAAAGTGAGGGAGTT TCATTATTCATTATATGAATGGAAGTCAAATCCGGTCATATGCCTCTCTTCTCTTTGA
Protein sequence (LotjaGi4g1v0445700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLNFQEICYCKGHLVGRFHRLYNLSQNKYAIVKELGGWRHGRWEWNFKWRRALRGREELWFDTLLNIINNGSLQEGRPD RWLWEPGEEGAYSVNSAYSFLQVSDLGVSDIDFQSIWYAFAPSKVKAFAWRMLLNRIPTKVNLRRRGVIPAEVEVLCPFY NRIEECCDHLFCTCSRSFDVWNAVYRWLGFETVLPSSSESVFSQFSFVGRNKKQRLAEVTVWMASCWSLWITRNSVIFKD GVWDGGLVVELIQVRTWHWLKEKVREFHYSLYEWKSNPVICLSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 45 | 282 | 238 | 5.8E-32 | – | |
PANTHER | 45 | 282 | 238 | 5.8E-32 | – | |
Pfam | 92 | 181 | 90 | 1.8E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0445700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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